jgi.p|Nanoce1779_2|573185, mRNA_1711 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|573185
Unique NamemRNA_1711
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1363
Alignment locationscaffold_1:1300154..1301516 -

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Properties
Property NameValue
TranscriptId573271
TrackFilteredModels2
ProteinId573185
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_1supercontigscaffold_1:1300154..1301516 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|573185gene_1711Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|573185mRNA_1711-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1711CDS_1711Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1711 ID=mRNA_1711|Name=jgi.p|Nanoce1779_2|573185|organism=Nannochloropsis oceanica|type=mRNA|length=1363bp
ACAGGGCACGCAATGAAGGCTTCACCACCCCTTTTTACCTCAACCCTAGC
CGCGCTGGCCCTGCTCGCGGTCGCCGAGGCTTTCCACGTCCGCCTCCCTC
TTCCAGTTCTGAGACCAGGAATAGCAGCCGCCGTCACATACTCCCATTCC
CATCCCAGCTCCAGCTCTGGCCTGATCTTTATGCGAAGAAGAAGGACCGT
TCTCTACAATGATCAGAATGGTAGCGGCAGCAGCAGCCGCAGCAAGGAAG
GCACTGTGATGGATGAGGCGCAGCTGGGAGAGGTAGAGGAAGAGGCCGAC
CTAGACGGCACCGGGGCGACGCTTGTCATGCCCTCCGCCACTACCGGACC
CACCTCGGCCGCAGCTTCTGCCGTGTTCCAGCTCTGGAAGCGACGGTTGT
GGACCAAGGCGGATTATCTCCATTCGCACGCCGTGTCGGGCACAGCGTTC
ATGGTGCTTGGGGCGCTCTATGTCCTATATTTCCTTGGGGACGAGCTTTT
TGCCGGGGCGGGCTTGGCGCACGCTGAGAACGGGGTGGTAGGATGGGTTC
CTCTGGCCATTATGTGGACAGGTGTGATCAACTGCATAAGTTGCTTGCCC
ATGTCCAAGTTTCGGACAGGGACCAGTGGCGGGTACGACACGAAGGGGGC
GGGTTTTAAGGGGTTGGGGATTGGAATGACCATGCTGGGGATATGGACGG
CTTATTTCTTCTCGGGACACTACCCTGCGTGGATGGCACCAGTTGATCCA
GTCCTGGCAATCGGGTTCTTGGCGGTGATTATCCATGGCATCGTGAACTC
GGAGGTGGCTTTAGCGAAAGAGCTGGAAGAGAAGGCGCCGGCCATGACCC
CTGAGGGAGTGTGGAAGTCCTCCCCCTCTTCCTCTGACGAGACCGACCCA
ACCGCAGCAGCTGCAGCGACCCAACAGCAGCTGGCCGTCGAAAGAGAGAC
ACGCACGGAGATCATTCTCAATCACCGCGTGGCTTCCTACCCTAATCTGC
TGCACCTTCCCGTCCTCTACAACATTATTCTCGGAGGCCAAGACTGGCTG
CAGCAGCTCCTCCTCAAGTTTCCCCTCGAGCCCACCCTCCTCTTTCATGC
CTCCTTCGGGATTGCTGTAGCGAACAGCATTGTATTTTTGGGTGCCACCT
TGAAGGATCGACGATTGATGACCTTACGGCAATGGCTGTTGTTGCAGGTG
GTGGTGTTGACTCCGTTCGTCACCACAGTGGTGGATGTGGGAACGTTGGG
AAGAGAGGTGAGCATTAATCCGTTTGAGGTGTATGCGGGCTTGATCGGAT
GAGGGGGGACTGAAGCGGAGGAGGGGGGCATTATGCAGGGGCGGACGCGA
TGGTCTTCGGGAT
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protein sequence of jgi.p|Nanoce1779_2|573185

>mRNA_1711-protein ID=mRNA_1711-protein|Name=jgi.p|Nanoce1779_2|573185|organism=Nannochloropsis oceanica|type=polypeptide|length=430bp
MKASPPLFTSTLAALALLAVAEAFHVRLPLPVLRPGIAAAVTYSHSHPSS
SSGLIFMRRRRTVLYNDQNGSGSSSRSKEGTVMDEAQLGEVEEEADLDGT
GATLVMPSATTGPTSAAASAVFQLWKRRLWTKADYLHSHAVSGTAFMVLG
ALYVLYFLGDELFAGAGLAHAENGVVGWVPLAIMWTGVINCISCLPMSKF
RTGTSGGYDTKGAGFKGLGIGMTMLGIWTAYFFSGHYPAWMAPVDPVLAI
GFLAVIIHGIVNSEVALAKELEEKAPAMTPEGVWKSSPSSSDETDPTAAA
AATQQQLAVERETRTEIILNHRVASYPNLLHLPVLYNIILGGQDWLQQLL
LKFPLEPTLLFHASFGIAVANSIVFLGATLKDRRLMTLRQWLLLQVVVLT
PFVTTVVDVGTLGREVSINPFEVYAGLIG*
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mRNA from alignment at scaffold_1:1300154..1301516-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1711 ID=mRNA_1711|Name=jgi.p|Nanoce1779_2|573185|organism=Nannochloropsis oceanica|type=mRNA|length=1363bp|location=Sequence derived from alignment at scaffold_1:1300154..1301516- (Nannochloropsis oceanica)
ACAGGGCACGCAATGAAGGCTTCACCACCCCTTTTTACCTCAACCCTAGC
CGCGCTGGCCCTGCTCGCGGTCGCCGAGGCTTTCCACGTCCGCCTCCCTC
TTCCAGTTCTGAGACCAGGAATAGCAGCCGCCGTCACATACTCCCATTCC
CATCCCAGCTCCAGCTCTGGCCTGATCTTTATGCGAAGAAGAAGGACCGT
TCTCTACAATGATCAGAATGGTAGCGGCAGCAGCAGCCGCAGCAAGGAAG
GCACTGTGATGGATGAGGCGCAGCTGGGAGAGGTAGAGGAAGAGGCCGAC
CTAGACGGCACCGGGGCGACGCTTGTCATGCCCTCCGCCACTACCGGACC
CACCTCGGCCGCAGCTTCTGCCGTGTTCCAGCTCTGGAAGCGACGGTTGT
GGACCAAGGCGGATTATCTCCATTCGCACGCCGTGTCGGGCACAGCGTTC
ATGGTGCTTGGGGCGCTCTATGTCCTATATTTCCTTGGGGACGAGCTTTT
TGCCGGGGCGGGCTTGGCGCACGCTGAGAACGGGGTGGTAGGATGGGTTC
CTCTGGCCATTATGTGGACAGGTGTGATCAACTGCATAAGTTGCTTGCCC
ATGTCCAAGTTTCGGACAGGGACCAGTGGCGGGTACGACACGAAGGGGGC
GGGTTTTAAGGGGTTGGGGATTGGAATGACCATGCTGGGGATATGGACGG
CTTATTTCTTCTCGGGACACTACCCTGCGTGGATGGCACCAGTTGATCCA
GTCCTGGCAATCGGGTTCTTGGCGGTGATTATCCATGGCATCGTGAACTC
GGAGGTGGCTTTAGCGAAAGAGCTGGAAGAGAAGGCGCCGGCCATGACCC
CTGAGGGAGTGTGGAAGTCCTCCCCCTCTTCCTCTGACGAGACCGACCCA
ACCGCAGCAGCTGCAGCGACCCAACAGCAGCTGGCCGTCGAAAGAGAGAC
ACGCACGGAGATCATTCTCAATCACCGCGTGGCTTCCTACCCTAATCTGC
TGCACCTTCCCGTCCTCTACAACATTATTCTCGGAGGCCAAGACTGGCTG
CAGCAGCTCCTCCTCAAGTTTCCCCTCGAGCCCACCCTCCTCTTTCATGC
CTCCTTCGGGATTGCTGTAGCGAACAGCATTGTATTTTTGGGTGCCACCT
TGAAGGATCGACGATTGATGACCTTACGGCAATGGCTGTTGTTGCAGGTG
GTGGTGTTGACTCCGTTCGTCACCACAGTGGTGGATGTGGGAACGTTGGG
AAGAGAGGTGAGCATTAATCCGTTTGAGGTGTATGCGGGCTTGATCGGAT
GAGGGGGGACTGAAGCGGAGGAGGGGGGCATTATGCAGGGGCGGACGCGA
TGGTCTTCGGGAT
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Coding sequence (CDS) from alignment at scaffold_1:1300154..1301516-

>mRNA_1711 ID=mRNA_1711|Name=jgi.p|Nanoce1779_2|573185|organism=Nannochloropsis oceanica|type=CDS|length=1290bp|location=Sequence derived from alignment at scaffold_1:1300154..1301516- (Nannochloropsis oceanica)
ATGAAGGCTTCACCACCCCTTTTTACCTCAACCCTAGCCGCGCTGGCCCT
GCTCGCGGTCGCCGAGGCTTTCCACGTCCGCCTCCCTCTTCCAGTTCTGA
GACCAGGAATAGCAGCCGCCGTCACATACTCCCATTCCCATCCCAGCTCC
AGCTCTGGCCTGATCTTTATGCGAAGAAGAAGGACCGTTCTCTACAATGA
TCAGAATGGTAGCGGCAGCAGCAGCCGCAGCAAGGAAGGCACTGTGATGG
ATGAGGCGCAGCTGGGAGAGGTAGAGGAAGAGGCCGACCTAGACGGCACC
GGGGCGACGCTTGTCATGCCCTCCGCCACTACCGGACCCACCTCGGCCGC
AGCTTCTGCCGTGTTCCAGCTCTGGAAGCGACGGTTGTGGACCAAGGCGG
ATTATCTCCATTCGCACGCCGTGTCGGGCACAGCGTTCATGGTGCTTGGG
GCGCTCTATGTCCTATATTTCCTTGGGGACGAGCTTTTTGCCGGGGCGGG
CTTGGCGCACGCTGAGAACGGGGTGGTAGGATGGGTTCCTCTGGCCATTA
TGTGGACAGGTGTGATCAACTGCATAAGTTGCTTGCCCATGTCCAAGTTT
CGGACAGGGACCAGTGGCGGGTACGACACGAAGGGGGCGGGTTTTAAGGG
GTTGGGGATTGGAATGACCATGCTGGGGATATGGACGGCTTATTTCTTCT
CGGGACACTACCCTGCGTGGATGGCACCAGTTGATCCAGTCCTGGCAATC
GGGTTCTTGGCGGTGATTATCCATGGCATCGTGAACTCGGAGGTGGCTTT
AGCGAAAGAGCTGGAAGAGAAGGCGCCGGCCATGACCCCTGAGGGAGTGT
GGAAGTCCTCCCCCTCTTCCTCTGACGAGACCGACCCAACCGCAGCAGCT
GCAGCGACCCAACAGCAGCTGGCCGTCGAAAGAGAGACACGCACGGAGAT
CATTCTCAATCACCGCGTGGCTTCCTACCCTAATCTGCTGCACCTTCCCG
TCCTCTACAACATTATTCTCGGAGGCCAAGACTGGCTGCAGCAGCTCCTC
CTCAAGTTTCCCCTCGAGCCCACCCTCCTCTTTCATGCCTCCTTCGGGAT
TGCTGTAGCGAACAGCATTGTATTTTTGGGTGCCACCTTGAAGGATCGAC
GATTGATGACCTTACGGCAATGGCTGTTGTTGCAGGTGGTGGTGTTGACT
CCGTTCGTCACCACAGTGGTGGATGTGGGAACGTTGGGAAGAGAGGTGAG
CATTAATCCGTTTGAGGTGTATGCGGGCTTGATCGGATGA
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Synonyms
Publications