jgi.p|Nanoce1779_2|573178, mRNA_1710 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|573178
Unique Name	mRNA_1710
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2234
Alignment location	scaffold_1:1297397..1299804 +

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Properties


Property Name	Value
TranscriptId	573264
Track	FilteredModels2
ProteinId	573178

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_1	supercontig	scaffold_1:1297397..1299804 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|573178	gene_1710	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|573178	mRNA_1710-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_1710	CDS_1710	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_1:1297397..1299804+
coding sequence from alignment at scaffold_1:1297397..1299804+

mRNA sequence

>mRNA_1710 ID=mRNA_1710|Name=jgi.p|Nanoce1779_2|573178|organism=Nannochloropsis oceanica|type=mRNA|length=2234bp
CAGGGGCTCCATAGAAAGGCCTGTGGTTTTCCGTCCAAAGTCACGCCAAG
GCCGTAAGCGGGCGGACCTTCAGGAGATGATAACGTTATTTATCGTGGTT
GTACTTATAGATTTTCTTCAAAAACATGAGTGGTCAAAGGCCCGCGACTC
GCTCTATTGCACGGGTTCGACGACCCGAAGAACAAAGCGCGCGCGGGGAA
AAAAATGCTTTCTTTGACGTTTTTCCTTCAACAACCACACGCCCTTTTAC
ACACCTCGGTTACATACACCAACGTCCAGGACGAAGATGAGCGGGTAGGT
GGGCGCTCATTCGGAGGGATCGCCGCCGTCACTGCGGAGACTGATTTGCG
TTGTGTGATGAGCCGCGCAGCAGGGAGCAGTCGCCGCTACGAGAAGAGGG
GATGGAACATGTACATGAAGCGCGTGGACTGTCTTACTGCTAACCAGGCC
CATCTCTCCCTTATCCCACACCTAGTGCCTGAGGTTGAGCCGGGTGAGCT
GGTGGTGGAGGAGGTAGGCACCATGATGACCCACTATGTTGGGCTTGTGC
AGGAACAGAAATTCGACGGGGCCGTGTCCATGTCGTATGACTACGGTATG
CTCGACGACCCGCGATGGGAGTAGGTGGATAGTTACATAGGCGGGTTAAT
CCTCCCCGTGGTGTGGTGCCCGATCGTCATCCCCGGACAGGTGCATGAAC
TGCTGCAGTACTAGGCAGATGGCGCGGCCGGCGGTGGACAACACGGCCCC
GAGGGTGCAGCAGGAGGCGATAGAGGCAGTGTGATCTTGCGCGAAGGATT
TACTCGATCGCCTCCACCGCCTCCACCACCTCCACCAGCACGTTTGTGCC
TCAAGAATGGGGTAGTCGCTGTGTGAGGTGTGTGTAGCGGTGAGGTTGTT
GTCATGTAGAAACGGATCAACGCGTCAAGGTCTTGCCAGAGATCGCTTGA
ATGGCCCCAGATTCTATTTGAGGGAGGATCCGGTAGATTTCGATGATCTA
TTTCGTTTTTGTGTTTTGGTTTTGGTTCATGAGCTTTGTTTGTCTTCGTT
ACATTCGAACCAAGGCATCGGCAGTGGATGATCGGCAGGGGATGCAAGCC
TATCCCGGACACAGTGCCGCCTGGACCACGTGATTGTTTTGTCGGTGCAT
TTCATACTTCTGCCTTATTATTAACACATCATCTACGCCCCCCCCATTGC
AGGACAGCTTATCGATGCTGAGCAGTAGCTCCATGCCCGTCTCCTCCGCT
AGAGATTTGATGCATAATAACAGCAATGACGCCATGGTAATCTGGGGGTC
ACGGATCTGGGGGCTGCGGGCCTTGGGCTTGGCAGTGGGCGTGGCAGGCG
TCTTGCTCTTGGCCCTGGTTATCACAGGGGAGGACTCCAGTAACAACCGC
AGCAACAGCAACAAGAGCAAATTCATCCTCACCGATGTGGGCGCTAGATT
CAGCGGCATGAACGAAAAGGGCACATTGGACACCAACGACGATAATCTGC
CTGCTGGTCACATGCTCAATGACGACCGTCCGTACATCACCCTCTTCGGC
GACAGCATTACGCAATATGGGTGGAACCCTGCCCTCCTGGGGTATGCTAG
CCTCCTCGCTCACACCTACACACGTTGTGCCGACGTTAAGAACCGCGGTG
CGTCGGGCTACACGACGCGAGACGCAGTGCGCGTCCTGGATTCAGTCTTC
CCTTTGGGCCCGCAGAGCTGGGTCCAGGCCCACCCTCCCGCCCTTGTCGT
CATCCTCCTCGGCTCCAACGACCAGATTCAGCCGGGCATGTGGGTGGAAG
CCACCACAGGAGAAGACCACCACGTGCCCTTGGCTGAATACACCGCCAAC
TACAGATGTATTCTCACGCACCTCCGCACGCTTCAGGTGGAGTTGCCTCT
TATCTTGGTTACCCCTCCTCCTGTTGGCGAAGACGTGAAAAGCGCACGAA
CAAACGGTGCGATCAAGGAATACAGGGAAGTGGTTCTCTCGCTCGGGAAA
GAAGAGGGCATTCCCGTCTTCGACTTATGGAAAGCGTGTGAAGGGGAAGA
TGTTGAGAAATTCAACTCTTATTTGGTCGACGGGCTGCATCTGAATGGGG
CGGGGAACACAGTGCTTTATAAAGGGCTGATGGGCGTGGTCGGAAAACAC
TACCCGGACTTGCTTCCGGAGGGGACAAAGATGCCCAAGAGGGAGAGGGA
TCCTTGGGAGGCGTGAGGGGAGGAGGGAGGAAGG

protein sequence of jgi.p|Nanoce1779_2|573178

>mRNA_1710-protein ID=mRNA_1710-protein|Name=jgi.p|Nanoce1779_2|573178|organism=Nannochloropsis oceanica|type=polypeptide|length=334bp
MLSSSSMPVSSARDLMHNNSNDAMVIWGSRIWGLRALGLAVGVAGVLLLA
LVITGEDSSNNRSNSNKSKFILTDVGARFSGMNEKGTLDTNDDNLPAGHM
LNDDRPYITLFGDSITQYGWNPALLGYASLLAHTYTRCADVKNRGASGYT
TRDAVRVLDSVFPLGPQSWVQAHPPALVVILLGSNDQIQPGMWVEATTGE
DHHVPLAEYTANYRCILTHLRTLQVELPLILVTPPPVGEDVKSARTNGAI
KEYREVVLSLGKEEGIPVFDLWKACEGEDVEKFNSYLVDGLHLNGAGNTV
LYKGLMGVVGKHYPDLLPEGTKMPKRERDPWEA*

mRNA from alignment at scaffold_1:1297397..1299804+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_1710 ID=mRNA_1710|Name=jgi.p|Nanoce1779_2|573178|organism=Nannochloropsis oceanica|type=mRNA|length=2408bp|location=Sequence derived from alignment at scaffold_1:1297397..1299804+ (Nannochloropsis oceanica)
CAGGGGCTCCATAGAAAGGCCTGTGGTTTTCCGTCCAAAGTCACGCCAAG
GCCGTAAGCGGGCGGACCTTCAGGAGATGATAACGTTATTTATCGTGGTT
GTACTTATAGATTTTCTTCAAAAACATGAGTGGTCAAAGGCCCGCGACTC
GCTCTATTGCACGGGTTCGACGACCCGAAGAACAAAGCGCGCGCGGGGAA
AAAAATGCTTTCTTTGACGTTTTTCCTTCAACAACCACACGCCCTTTTAC
ACACCTCGGTTACATACACCAACGTCCAGGACGAAGATGAGCGGGTAGGT
GGGCGCTCATTCGGAGGGATCGCCGCCGTCACTGCGGAGACTGATTTGCG
TTGTGTGATGAGCCGCGCAGCAGGGAGCAGTCGCCGCTACGAGAAGAGGG
GATGGAACATGTACATGAAGCGCGTGGACTGTCTTACTGCTAACCAGGCC
CATCTCTCCCTTATCCCACACCTAGTGCCTGAGGTTGAGCCGGGTGAGCT
GGTGGTGGAGGAGGTAGGCACCATGATGACCCACTATGTTGGGCTTGTGC
AGGAACAGAAATTCGACGGGGCCGTGTCCATGTCGTATGACTACGGTATG
CTCGACGACCCGCGATGGGAGTAGGTGGATAGTTACATAGGCGGGTTAAT
CCTCCCCGTGGTGTGGTGCCCGATCGTCATCCCCGGACAGGTGCATGAAC
TGCTGCAGTACTAGGCAGATGGCGCGGCCGGCGGTGGACAACACGGCCCC
GAGGGTGCAGCAGGAGGCGATAGAGGCAGTGTGATCTTGCGCGAAGGATT
TACTCGATCGCCTCCACCGCCTCCACCACCTCCACCAGCACGTTTGTGCC
TCAAGAATGGGGTAGTCGCTGTGTGAGGTGTGTGTAGCGGTGAGGTTGTT
GTCATGTAGAAACGGATCAACGCGTCAAGGTCTTGCCAGAGATCGCTTGA
ATGGCCCCAGATTCTATTTGAGGGAGGATCCGGTAGATTTCGATGATCTA
TTTCGTTTTTGTGTTTTGGTTTTGGTTCATGAGCTTTGTTTGTCTTCGTT
ACATTCGAACCAAGGCATCGGCAGTGGATGATCGGCAGGGGATGCAAGCC
TATCCCGGACACAGTGCCGCCTGGACCACGTGATTGTTTTGTCGGTGCAT
TTCATACTTCTGCCTTATTATTAACACATCATCTACGCCCCCCCCATTGC
AGGACAGCTTATCGATGCTGAGCAGTAGCTCCATGCCCGTCTCCTCCGCT
AGAGATTTGATGCATAATAACAGCAATGACGCCATGGTAATCTGGGGGTC
ACGGATCTGGGGGCTGCGGGCCTTGGGCTTGGCAGTGGGCGTGGCAGGCG
TCTTGCTCTTGGCCCTGGTTATCACAGGGGAGGACTCCAGTAACAACCGC
AGCAACAGCAACAAGAGCAAATTCATCCTCACCGATGTGGGCGCTAGATT
CAGCGGCATGAACGAAAAGGGCACATTGGACACCAACGACGATAATCTGC
CTGCTGGTCACATGCTCAATGACGACCGTCCGTACATCACCCTCTTCGGT
GCGTGCGATAATTATCCCCTGCATCCATTTGACAAGCTTCCTTGGATGCC
ACTTGAACCGTTGTATCGGCCACTCTGTTTGAGTAGATTGTAAACTCTAC
AGACCCCGTGAAATACCTATTTCTCACACTTTATCCACGACCCATTTTTC
CTCTGCTCTTTTTCCGTTGCAGGCGACAGCATTACGCAATATGGGTGGAA
CCCTGCCCTCCTGGGGTATGCTAGCCTCCTCGCTCACACCTACACACGTT
GTGCCGACGTTAAGAACCGCGGTGCGTCGGGCTACACGACGCGAGACGCA
GTGCGCGTCCTGGATTCAGTCTTCCCTTTGGGCCCGCAGAGCTGGGTCCA
GGCCCACCCTCCCGCCCTTGTCGTCATCCTCCTCGGCTCCAACGACCAGA
TTCAGCCGGGCATGTGGGTGGAAGCCACCACAGGAGAAGACCACCACGTG
CCCTTGGCTGAATACACCGCCAACTACAGATGTATTCTCACGCACCTCCG
CACGCTTCAGGTGGAGTTGCCTCTTATCTTGGTTACCCCTCCTCCTGTTG
GCGAAGACGTGAAAAGCGCACGAACAAACGGTGCGATCAAGGAATACAGG
GAAGTGGTTCTCTCGCTCGGGAAAGAAGAGGGCATTCCCGTCTTCGACTT
ATGGAAAGCGTGTGAAGGGGAAGATGTTGAGAAATTCAACTCTTATTTGG
TCGACGGGCTGCATCTGAATGGGGCGGGGAACACAGTGCTTTATAAAGGG
CTGATGGGCGTGGTCGGAAAACACTACCCGGACTTGCTTCCGGAGGGGAC
AAAGATGCCCAAGAGGGAGAGGGATCCTTGGGAGGCGTGAGGGGAGGAGG
GAGGAAGG

Coding sequence (CDS) from alignment at scaffold_1:1297397..1299804+

>mRNA_1710 ID=mRNA_1710|Name=jgi.p|Nanoce1779_2|573178|organism=Nannochloropsis oceanica|type=CDS|length=2004bp|location=Sequence derived from alignment at scaffold_1:1297397..1299804+ (Nannochloropsis oceanica)
ATGCTGAGCAGTAGCTCCATGCCCGTCTCCTCCGCTAGAGATTTGATGCA
TAATAACAGCAATGACGCCATGGTAATCTGGGGGTCACGGATCTGGGGGC
TGCGGGCCTTGGGCTTGGCAGTGGGCGTGGCAGGCGTCTTGCTCTTGGCC
CTGGTTATCACAGGGGAGGACTCCAGTAACAACCGCAGCAACAGCAACAA
GAGCAAATTCATCCTCACCGATGTGGGCGCTAGATTCAGCGGCATGAACG
AAAAGGGCACATTGGACACCAACGACGATAATCTGCCTGCTGGTCACATG
CTCAATGACGACCGTCCGTACATCACCCTCTTCGGCGACAGCATTACGCA
ATATGGGTGGAACCCTGCCCTCCTGGGGTATGCTAGCCTCCTCGCTCACA
CCTACACACGTTGTGCCGACGTTAAGAACCGCGGTGCGTCGGGCTACACG
ACGCGAGACGCAGTGCGCGTCCTGGATTCAGTCTTCCCTTTGGGCCCGCA
GAGCTGGGTCCAGGCCCACCCTCCCGCCCTTGTCGTCATCCTCCTCGGCT
CCAACGACCAGATTCAGCCGGGCATGTGGGTGGAAGCCACCACAGGAGAA
GACCACCACGTGCCCTTGGCTGAATACACCGCCAACTACAGATGTATTCT
CACGCACCTCCGCACGCTTCAGGTGGAGTTGCCTCTTATCTTGGTTACCC
CTCCTCCTGTTGGCGAAGACGTGAAAAGCGCACGAACAAACGGTGCGATC
AAGGAATACAGGGAAGTGGTTCTCTCGCTCGGGAAAGAAGAGGGCATTCC
CGTCTTCGACTTATGGAAAGCGTGTGAAGGGGAAGATGTTGAGAAATTCA
ACTCTTATTTGGTCGACGGGCTGCATCTGAATGGGGCGGGGAACACAGTG
CTTTATAAAGGGCTGATGGGCGTGGTCGGAAAACACTACCCGGACTTGCT
TCCGGAGGGGACAAAGATGCCCAAGAGGGAGAGGGATCCTTGGGAGGCGT
GAATGCTGAGCAGTAGCTCCATGCCCGTCTCCTCCGCTAGAGATTTGATG
CATAATAACAGCAATGACGCCATGGTAATCTGGGGGTCACGGATCTGGGG
GCTGCGGGCCTTGGGCTTGGCAGTGGGCGTGGCAGGCGTCTTGCTCTTGG
CCCTGGTTATCACAGGGGAGGACTCCAGTAACAACCGCAGCAACAGCAAC
AAGAGCAAATTCATCCTCACCGATGTGGGCGCTAGATTCAGCGGCATGAA
CGAAAAGGGCACATTGGACACCAACGACGATAATCTGCCTGCTGGTCACA
TGCTCAATGACGACCGTCCGTACATCACCCTCTTCGGCGACAGCATTACG
CAATATGGGTGGAACCCTGCCCTCCTGGGGTATGCTAGCCTCCTCGCTCA
CACCTACACACGTTGTGCCGACGTTAAGAACCGCGGTGCGTCGGGCTACA
CGACGCGAGACGCAGTGCGCGTCCTGGATTCAGTCTTCCCTTTGGGCCCG
CAGAGCTGGGTCCAGGCCCACCCTCCCGCCCTTGTCGTCATCCTCCTCGG
CTCCAACGACCAGATTCAGCCGGGCATGTGGGTGGAAGCCACCACAGGAG
AAGACCACCACGTGCCCTTGGCTGAATACACCGCCAACTACAGATGTATT
CTCACGCACCTCCGCACGCTTCAGGTGGAGTTGCCTCTTATCTTGGTTAC
CCCTCCTCCTGTTGGCGAAGACGTGAAAAGCGCACGAACAAACGGTGCGA
TCAAGGAATACAGGGAAGTGGTTCTCTCGCTCGGGAAAGAAGAGGGCATT
CCCGTCTTCGACTTATGGAAAGCGTGTGAAGGGGAAGATGTTGAGAAATT
CAACTCTTATTTGGTCGACGGGCTGCATCTGAATGGGGCGGGGAACACAG
TGCTTTATAAAGGGCTGATGGGCGTGGTCGGAAAACACTACCCGGACTTG
CTTCCGGAGGGGACAAAGATGCCCAAGAGGGAGAGGGATCCTTGGGAGGC
GTGA

Synonyms

Publications