jgi.p|Nanoce1779_2|563150, mRNA_171 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|563150
Unique NamemRNA_171
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length471
Alignment locationscaffold_3:435910..436380 +

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Properties
Property NameValue
TranscriptId563236
TrackFilteredModels2
ProteinId563150
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_3supercontigscaffold_3:435910..436380 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|563150gene_171Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|563150mRNA_171-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_171CDS_171Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_171 ID=mRNA_171|Name=jgi.p|Nanoce1779_2|563150|organism=Nannochloropsis oceanica|type=mRNA|length=471bp
ATGGCCAAATCCGCGCGCTCCAAGACCCGCAAACACTGGGCCTCCGAGCG
GCGGCGGACACTGGGAGTGCCGGCAGAGACTAAGCAGCTAAAGGAGCAAG
CCGAGCGGCTTGCGGCGAGCCTCTCCACTCAGACAGACCAGCCCTCCATT
ATGAAGCTACGAGGGATTTTAAGGAGGTTACCGGGAAGTGAAGCACAAGC
CATGTCCGTACAACGTCGCATGGCCATCAACAACAAGACCAAGAAGAGCA
GCAGCAACAAGAAGGAGGCGGTGGCGAAGAAAGCGTCCGAGGAGGATGTC
GAGATGCCCCCGGCAGCGGAGGAATCGGAGGAGGAGGAGGAGGAGGAGGA
GGCGGAGGGGATGGAGGTAGTGCCTGGTAAGAGGGCCACGGGCAAGGCGC
GCGTCATGTCACGGTTCAAGAAGTCTGGACAGGCGTACAGTGCCAAAAAG
CAGAAGCGTGTCAAGCTTTAG
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protein sequence of jgi.p|Nanoce1779_2|563150

>mRNA_171-protein ID=mRNA_171-protein|Name=jgi.p|Nanoce1779_2|563150|organism=Nannochloropsis oceanica|type=polypeptide|length=157bp
MAKSARSKTRKHWASERRRTLGVPAETKQLKEQAERLAASLSTQTDQPSI
MKLRGILRRLPGSEAQAMSVQRRMAINNKTKKSSSNKKEAVAKKASEEDV
EMPPAAEESEEEEEEEEAEGMEVVPGKRATGKARVMSRFKKSGQAYSAKK
QKRVKL*
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mRNA from alignment at scaffold_3:435910..436380+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_171 ID=mRNA_171|Name=jgi.p|Nanoce1779_2|563150|organism=Nannochloropsis oceanica|type=mRNA|length=471bp|location=Sequence derived from alignment at scaffold_3:435910..436380+ (Nannochloropsis oceanica)
ATGGCCAAATCCGCGCGCTCCAAGACCCGCAAACACTGGGCCTCCGAGCG
GCGGCGGACACTGGGAGTGCCGGCAGAGACTAAGCAGCTAAAGGAGCAAG
CCGAGCGGCTTGCGGCGAGCCTCTCCACTCAGACAGACCAGCCCTCCATT
ATGAAGCTACGAGGGATTTTAAGGAGGTTACCGGGAAGTGAAGCACAAGC
CATGTCCGTACAACGTCGCATGGCCATCAACAACAAGACCAAGAAGAGCA
GCAGCAACAAGAAGGAGGCGGTGGCGAAGAAAGCGTCCGAGGAGGATGTC
GAGATGCCCCCGGCAGCGGAGGAATCGGAGGAGGAGGAGGAGGAGGAGGA
GGCGGAGGGGATGGAGGTAGTGCCTGGTAAGAGGGCCACGGGCAAGGCGC
GCGTCATGTCACGGTTCAAGAAGTCTGGACAGGCGTACAGTGCCAAAAAG
CAGAAGCGTGTCAAGCTTTAG
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Coding sequence (CDS) from alignment at scaffold_3:435910..436380+

>mRNA_171 ID=mRNA_171|Name=jgi.p|Nanoce1779_2|563150|organism=Nannochloropsis oceanica|type=CDS|length=471bp|location=Sequence derived from alignment at scaffold_3:435910..436380+ (Nannochloropsis oceanica)
ATGGCCAAATCCGCGCGCTCCAAGACCCGCAAACACTGGGCCTCCGAGCG
GCGGCGGACACTGGGAGTGCCGGCAGAGACTAAGCAGCTAAAGGAGCAAG
CCGAGCGGCTTGCGGCGAGCCTCTCCACTCAGACAGACCAGCCCTCCATT
ATGAAGCTACGAGGGATTTTAAGGAGGTTACCGGGAAGTGAAGCACAAGC
CATGTCCGTACAACGTCGCATGGCCATCAACAACAAGACCAAGAAGAGCA
GCAGCAACAAGAAGGAGGCGGTGGCGAAGAAAGCGTCCGAGGAGGATGTC
GAGATGCCCCCGGCAGCGGAGGAATCGGAGGAGGAGGAGGAGGAGGAGGA
GGCGGAGGGGATGGAGGTAGTGCCTGGTAAGAGGGCCACGGGCAAGGCGC
GCGTCATGTCACGGTTCAAGAAGTCTGGACAGGCGTACAGTGCCAAAAAG
CAGAAGCGTGTCAAGCTTTAG
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Synonyms
Publications