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Properties
| Property Name | Value |
|---|
| TranscriptId | 667676 |
| Track | FilteredModels2 |
| ProteinId | 667590 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_1 | supercontig | scaffold_1:1295046..1297331 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_1709 ID=mRNA_1709|Name=jgi.p|Nanoce1779_2|667590|organism=Nannochloropsis oceanica|type=mRNA|length=1848bp
AATGAAGACCATCAGCATGTAAGATTTTGTTGCCTGCGTGCTCATAATTC
TACTTGTGACTGCAGGGAGTCTTTTAACGCTCTCTCAAAGCCCTCCTCAC
TAGAATGCGCACAGCCAATGTCAACTTCTTAACGGGCGACTTCTTTCCTT
CTTGCAAAGCGTATCCCCTGGCAAGTGACCGTCACCCTGATCCTGAGCCT
GACACCAACAACCTGCATGCCCATTCCGAATAGGGTAGACACTTGGGCTC
TTGCTTCTTTGCTCTAGTACTCTGGGGTCTTACCACAAGATGGCGACGAC
ATAGATCATCAGGCAGAAATACTTGTTATTCAGGCTCTGGTCTTTCAGCT
ATGTGCTTGCAGAATACACAGAGACATCGGCGCGCTCTCGAAGTCACTAG
AATTTCGATGCCCTATGGGTACTGACATATCGCCGCATCATCACCGCTTT
TTTCGCCCCCCCTAGACAAACATCCACAGGCGGCATCATGCCTCTACACT
CCTCCTCCTCCGCGCCCTCCGACCCCTCCTTCTCCTTTTCATTCCTGCCC
AACCCATCCTCTGCCGTGCATCGCTTCACAGCCAGCCTACTCACCCACCC
GTTGATCGTCCCGCTCATCTCCTACGTCTACGCCTGTCCCTTTCTCTTAC
TCTGGGCGAAGGTACGATTAGTGTGCTTCATCAAGGGTCGAAAATCGCAA
GCTCCCATCGCCCCTTCCGATGCCGTGGCGGCTGCGCTGTTGAACAAGCG
ATACGGAGAGCATAAATACTTACATGCCAATGGCTTGCGCTTCCATTATG
TCGAGAAGGGCACGCCGTCCGCACACGCGCCGTTGGTCTTGTTCTTGCAT
GGCTTTCCTGAGTTCTGGTACTCGTGGCGCAATCAGCTTCATTTCTTGGG
CACCCATGGCTTCCACACTGTGGCTTTGGACATGAGGGGGTATGGGTGGA
CCGAAAAGCCGAAAGAAATCGCAGCGTACAATCTAGAGGTCCTGGTGTGC
GATGTCCGGGAAGTGATCGACGCATTAGGCTACGGTCCTCAGGAGGATGG
GCAGGAGGGGAGGGGCTGTGTATTGGTAGGGCATGACTGGGGGGGAACGG
TGGCATGGACGGCGGCACACGTGCTAGGCCCGTCTCGGATCAAGGGCTTG
TGTGTCATGAACTGCCCACATCCCAAGGTATACATGGAGCAGGCGACGAT
GGCCCAATTTTTCAAATCGTGGTATTTCTATTTCTTCCAAGTTCCCACTC
TCCCCGAAACCATGCTGAGCGCCGGACAATGGCAAGCCGTTGGGGCGTGC
TTCCGAGGGAAACGCTCCGGGGTTAAACGGTATGATGCCGCCATGTCAGA
AACGGACCTGGCCGTTATGAAGCACGCCTTCTCCCAACGGGGGGTGGTGT
CAGGGGCCGTGAATTATTATCGGGCTAACATTTTCCGGAGCAAGGAGGAG
GGGGTGGAGAGAGCGACAGAGGGGCGGTTGGCGATGCCCGTGTTGTTGGT
GTGGGGGTTGAAGGACACTGCGTTAGGAGAGGAGCTGCTGGTGGGTGTTG
ACAAATACGTGGAGGAGGGAGAGCTGAGGGTGGCGACTGTCGAGGATGCG
AGCCACTGGGTTCAGGTGGATGCCTGGAAGGAAACGTGTGACTTGGTGTG
GCGGTTCGCAGTGCAAGTGCGGACGCGCGGTGCGGGGAAAGGAGGGGAGG
CTGGGAAAAATGGAGGAGGAGGAGGAGGAAGTAGAGGAGGAGGAGGTGGT
GGAGGAGATAATTACAAGGCGGCGTCATCGAACTTGTGAGTAGATTCTGG
ATGTACATAGCAAGCACCAGCACAGAAAAAGATAACAACAGTGCAATG back to topprotein sequence of jgi.p|Nanoce1779_2|667590 >mRNA_1709-protein ID=mRNA_1709-protein|Name=jgi.p|Nanoce1779_2|667590|organism=Nannochloropsis oceanica|type=polypeptide|length=434bp
MPLHSSSSAPSDPSFSFSFLPNPSSAVHRFTASLLTHPLIVPLISYVYAC
PFLLLWAKVRLVCFIKGRKSQAPIAPSDAVAAALLNKRYGEHKYLHANGL
RFHYVEKGTPSAHAPLVLFLHGFPEFWYSWRNQLHFLGTHGFHTVALDMR
GYGWTEKPKEIAAYNLEVLVCDVREVIDALGYGPQEDGQEGRGCVLVGHD
WGGTVAWTAAHVLGPSRIKGLCVMNCPHPKVYMEQATMAQFFKSWYFYFF
QVPTLPETMLSAGQWQAVGACFRGKRSGVKRYDAAMSETDLAVMKHAFSQ
RGVVSGAVNYYRANIFRSKEEGVERATEGRLAMPVLLVWGLKDTALGEEL
LVGVDKYVEEGELRVATVEDASHWVQVDAWKETCDLVWRFAVQVRTRGAG
KGGEAGKNGGGGGGSRGGGGGGGDNYKAASSNL* back to topmRNA from alignment at scaffold_1:1295046..1297331- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_1709 ID=mRNA_1709|Name=jgi.p|Nanoce1779_2|667590|organism=Nannochloropsis oceanica|type=mRNA|length=2286bp|location=Sequence derived from alignment at scaffold_1:1295046..1297331- (Nannochloropsis oceanica)
AATGAAGACCATCAGCATGTAAGATTTTGTTGCCTGCGTGCTCATAATTC
TACTTGTGACTGCAGGGAGTCTTTTAACGCTCTCTCAAAGCCCTCCTCAC
TAGAATGCGCACAGCCAATGTCAACTTCTTAACGGGCGACTTCTTTCCTT
CTTGCAAAGCGTATCCCCTGGCAAGTGACCGTCACCCTGATCCTGAGCCT
GACACCAACAACCTGCATGCCCATTCCGAATAGGGTAGACACTTGGGCTC
TTGCTTCTTTGCTCTAGTACTCTGGGGTCTTACCACAAGATGGCGACGAC
ATAGATCATCAGGCAGAAATACTTGTTATTCAGGCTCTGGTCTTTCAGCT
ATGTGCTTGCAGAATACACAGAGACATCGGCGCGCTCTCGAAGTCACTAG
AATTTCGATGCCCTATGGGTACTGACATATCGCCGCATCATCACCGCTTT
TTTCGCCCCCCCTAGACAAACATCCACAGGCGGCATCATGCCTCTACACT
CCTCCTCCTCCGCGCCCTCCGACCCCTCCTTCTCCTTTTCATTCCTGCCC
AACCCATCCTCTGCCGTGCATCGCTTCACAGCCAGCCTACTCACCCACCC
GTTGATCGTCCCGCTCATCTCCTACGTCTACGCCTGTCCCTTTCTCTTAC
TCTGGGCGAAGGTACGATTAGTGTGCTTCATCAAGGGTCGAAAATCGCAA
GCTCCCATCGCCCCTTCCGATGCCGTGGCGGCTGCGCTGTTGAACAAGCG
ATACGGAGAGCATAAATACTTACATGCCAATGGCTTGCGCTTCCATTATG
TCGAGAAGGGCACGCCGTCCGCACACGCGCCGTTGGTCTTGTTCTTGCAT
GGTAATGTCAACAAGTAGAAATGATGGAGAGGTGAGGGAGGGAATGAAAG
TGGATTTCGCGTTAGGACTTAAGAGGAGTCCTCTCTTTCTCCTTCCCTTC
TTCCCATGATCCCTGGGTACAGGCTTTCCTGAGTTCTGGTACTCGTGGCG
CAATCAGCTTCATTTCTTGGGCACCCATGGCTTCCACACTGTGGCTTTGG
ACATGAGGGGGTATGGGTGGACCGAAAAGCCGAAAGGTAGGGAAGGTTGA
GGGGATGGAGGGAGGTAGCGAAGGAGGGATGAATGACTAGTGTTACAAGA
GAAGCTCTTTCAGGTGTCTTAATTCACTTCCTTTCCTTCCTTCCTCCCCT
CCGCATGACAGAAATCGCAGCGTACAATCTAGAGGTCCTGGTGTGCGATG
TCCGGGAAGTGATCGACGCATTAGGCTACGGTCCTCAGGAGGATGGGCAG
GAGGGGAGGGGCTGTGTATTGGTAGGGCATGACTGGGGGGGAACGGTGGC
ATGGACGGCGGCACACGTGCTAGGCCCGTCTCGGATCAAGGGCTTGTGTG
TCATGAACTGCCCACATCCCAAGGTATACATGGAGCAGGCGACGATGGCC
CAATTTTTCAAATCGTGGTATTTCTATTGTGCGTAGAAAAGGGGAGGTGG
GAGGGAGAGAGGGAGGGAGGGAGGGAGGGAGGGAGAGGGAAGGGACACGG
ATCGGATCACAAATACTGATGTGCCTCGTTGCGCCCTCCTCATATAAACC
CCCCCCCCCCCTCCTCCCTCCGCTCTCCCTCTCTCCCTCCTTCCCTTCCT
CCTTCTTCTCCTCGTTTAAGTCTTCCAAGTTCCCACTCTCCCCGAAACCA
TGCTGAGCGCCGGACAATGGCAAGCCGTTGGGGCGTGCTTCCGAGGGAAA
CGCTCCGGGGTTAAACGGTATGATGCCGCCATGTCAGAAACGGACCTGGC
CGTTATGAAGCACGCCTTCTCCCAACGGGGGGTGGTGTCAGGGGCCGTGA
ATTATTATCGGGCTAACATTTTCCGGAGCAAGGAGGAGGGGGTGGAGAGA
GCGACAGAGGGGCGGTTGGCGATGCCCGTGTTGTTGGTGTGGGGGTTGAA
GGACACTGCGTTAGGAGAGGAGCTGCTGGTGGGTGTTGACAAATACGTGG
AGGAGGGAGAGCTGAGGGTGGCGACTGTCGAGGATGCGAGCCACTGGGTT
CAGGTGGATGCCTGGAAGGAAACGTGTGACTTGGTGTGGCGGTTCGCAGT
GCAAGTGCGGACGCGCGGTGCGGGGAAAGGAGGGGAGGCTGGGAAAAATG
GAGGAGGAGGAGGAGGAAGTAGAGGAGGAGGAGGTGGTGGAGGAGATAAT
TACAAGGCGGCGTCATCGAACTTGTGAGTAGATTCTGGATGTACATAGCA
AGCACCAGCACAGAAAAAGATAACAACAGTGCAATG back to topCoding sequence (CDS) from alignment at scaffold_1:1295046..1297331- >mRNA_1709 ID=mRNA_1709|Name=jgi.p|Nanoce1779_2|667590|organism=Nannochloropsis oceanica|type=CDS|length=5208bp|location=Sequence derived from alignment at scaffold_1:1295046..1297331- (Nannochloropsis oceanica)
TCTTCCAAGTTCCCACTCTCCCCGAAACCATGCTGAGCGCCGGACAATGG
CAAGCCGTTGGGGCGTGCTTCCGAGGGAAACGCTCCGGGGTTAAACGGTA
TGATGCCGCCATGTCAGAAACGGACCTGGCCGTTATGAAGCACGCCTTCT
CCCAACGGGGGGTGGTGTCAGGGGCCGTGAATTATTATCGGGCTAACATT
TTCCGGAGCAAGGAGGAGGGGGTGGAGAGAGCGACAGAGGGGCGGTTGGC
GATGCCCGTGTTGTTGGTGTGGGGGTTGAAGGACACTGCGTTAGGAGAGG
AGCTGCTGGTGGGTGTTGACAAATACGTGGAGGAGGGAGAGCTGAGGGTG
GCGACTGTCGAGGATGCGAGCCACTGGGTTCAGGTGGATGCCTGGAAGGA
AACGTGTGACTTGGTGTGGCGGTTCGCAGTGCAAGTGCGGACGCGCGGTG
CGGGGAAAGGAGGGGAGGCTGGGAAAAATGGAGGAGGAGGAGGAGGAAGT
AGAGGAGGAGGAGGTGGTGGAGGAGATAATTACAAGGCGGCGTCATCGAA
CTTGTGAAAATCGCAGCGTACAATCTAGAGGTCCTGGTGTGCGATGTCCG
GGAAGTGATCGACGCATTAGGCTACGGTCCTCAGGAGGATGGGCAGGAGG
GGAGGGGCTGTGTATTGGTAGGGCATGACTGGGGGGGAACGGTGGCATGG
ACGGCGGCACACGTGCTAGGCCCGTCTCGGATCAAGGGCTTGTGTGTCAT
GAACTGCCCACATCCCAAGGTATACATGGAGCAGGCGACGATGGCCCAAT
TTTTCAAATCGTGGTATTTCTATTGCTTTCCTGAGTTCTGGTACTCGTGG
CGCAATCAGCTTCATTTCTTGGGCACCCATGGCTTCCACACTGTGGCTTT
GGACATGAGGGGGTATGGGTGGACCGAAAAGCCGAAAGATGCCTCTACAC
TCCTCCTCCTCCGCGCCCTCCGACCCCTCCTTCTCCTTTTCATTCCTGCC
CAACCCATCCTCTGCCGTGCATCGCTTCACAGCCAGCCTACTCACCCACC
CGTTGATCGTCCCGCTCATCTCCTACGTCTACGCCTGTCCCTTTCTCTTA
CTCTGGGCGAAGGTACGATTAGTGTGCTTCATCAAGGGTCGAAAATCGCA
AGCTCCCATCGCCCCTTCCGATGCCGTGGCGGCTGCGCTGTTGAACAAGC
GATACGGAGAGCATAAATACTTACATGCCAATGGCTTGCGCTTCCATTAT
GTCGAGAAGGGCACGCCGTCCGCACACGCGCCGTTGGTCTTGTTCTTGCA
TGTCTTCCAAGTTCCCACTCTCCCCGAAACCATGCTGAGCGCCGGACAAT
GGCAAGCCGTTGGGGCGTGCTTCCGAGGGAAACGCTCCGGGGTTAAACGG
TATGATGCCGCCATGTCAGAAACGGACCTGGCCGTTATGAAGCACGCCTT
CTCCCAACGGGGGGTGGTGTCAGGGGCCGTGAATTATTATCGGGCTAACA
TTTTCCGGAGCAAGGAGGAGGGGGTGGAGAGAGCGACAGAGGGGCGGTTG
GCGATGCCCGTGTTGTTGGTGTGGGGGTTGAAGGACACTGCGTTAGGAGA
GGAGCTGCTGGTGGGTGTTGACAAATACGTGGAGGAGGGAGAGCTGAGGG
TGGCGACTGTCGAGGATGCGAGCCACTGGGTTCAGGTGGATGCCTGGAAG
GAAACGTGTGACTTGGTGTGGCGGTTCGCAGTGCAAGTGCGGACGCGCGG
TGCGGGGAAAGGAGGGGAGGCTGGGAAAAATGGAGGAGGAGGAGGAGGAA
GTAGAGGAGGAGGAGGTGGTGGAGGAGATAATTACAAGGCGGCGTCATCG
AACTTGTGAAAATCGCAGCGTACAATCTAGAGGTCCTGGTGTGCGATGTC
CGGGAAGTGATCGACGCATTAGGCTACGGTCCTCAGGAGGATGGGCAGGA
GGGGAGGGGCTGTGTATTGGTAGGGCATGACTGGGGGGGAACGGTGGCAT
GGACGGCGGCACACGTGCTAGGCCCGTCTCGGATCAAGGGCTTGTGTGTC
ATGAACTGCCCACATCCCAAGGTATACATGGAGCAGGCGACGATGGCCCA
ATTTTTCAAATCGTGGTATTTCTATTGCTTTCCTGAGTTCTGGTACTCGT
GGCGCAATCAGCTTCATTTCTTGGGCACCCATGGCTTCCACACTGTGGCT
TTGGACATGAGGGGGTATGGGTGGACCGAAAAGCCGAAAGATGCCTCTAC
ACTCCTCCTCCTCCGCGCCCTCCGACCCCTCCTTCTCCTTTTCATTCCTG
CCCAACCCATCCTCTGCCGTGCATCGCTTCACAGCCAGCCTACTCACCCA
CCCGTTGATCGTCCCGCTCATCTCCTACGTCTACGCCTGTCCCTTTCTCT
TACTCTGGGCGAAGGTACGATTAGTGTGCTTCATCAAGGGTCGAAAATCG
CAAGCTCCCATCGCCCCTTCCGATGCCGTGGCGGCTGCGCTGTTGAACAA
GCGATACGGAGAGCATAAATACTTACATGCCAATGGCTTGCGCTTCCATT
ATGTCGAGAAGGGCACGCCGTCCGCACACGCGCCGTTGGTCTTGTTCTTG
CATGTCTTCCAAGTTCCCACTCTCCCCGAAACCATGCTGAGCGCCGGACA
ATGGCAAGCCGTTGGGGCGTGCTTCCGAGGGAAACGCTCCGGGGTTAAAC
GGTATGATGCCGCCATGTCAGAAACGGACCTGGCCGTTATGAAGCACGCC
TTCTCCCAACGGGGGGTGGTGTCAGGGGCCGTGAATTATTATCGGGCTAA
CATTTTCCGGAGCAAGGAGGAGGGGGTGGAGAGAGCGACAGAGGGGCGGT
TGGCGATGCCCGTGTTGTTGGTGTGGGGGTTGAAGGACACTGCGTTAGGA
GAGGAGCTGCTGGTGGGTGTTGACAAATACGTGGAGGAGGGAGAGCTGAG
GGTGGCGACTGTCGAGGATGCGAGCCACTGGGTTCAGGTGGATGCCTGGA
AGGAAACGTGTGACTTGGTGTGGCGGTTCGCAGTGCAAGTGCGGACGCGC
GGTGCGGGGAAAGGAGGGGAGGCTGGGAAAAATGGAGGAGGAGGAGGAGG
AAGTAGAGGAGGAGGAGGTGGTGGAGGAGATAATTACAAGGCGGCGTCAT
CGAACTTGTGAAAATCGCAGCGTACAATCTAGAGGTCCTGGTGTGCGATG
TCCGGGAAGTGATCGACGCATTAGGCTACGGTCCTCAGGAGGATGGGCAG
GAGGGGAGGGGCTGTGTATTGGTAGGGCATGACTGGGGGGGAACGGTGGC
ATGGACGGCGGCACACGTGCTAGGCCCGTCTCGGATCAAGGGCTTGTGTG
TCATGAACTGCCCACATCCCAAGGTATACATGGAGCAGGCGACGATGGCC
CAATTTTTCAAATCGTGGTATTTCTATTGCTTTCCTGAGTTCTGGTACTC
GTGGCGCAATCAGCTTCATTTCTTGGGCACCCATGGCTTCCACACTGTGG
CTTTGGACATGAGGGGGTATGGGTGGACCGAAAAGCCGAAAGATGCCTCT
ACACTCCTCCTCCTCCGCGCCCTCCGACCCCTCCTTCTCCTTTTCATTCC
TGCCCAACCCATCCTCTGCCGTGCATCGCTTCACAGCCAGCCTACTCACC
CACCCGTTGATCGTCCCGCTCATCTCCTACGTCTACGCCTGTCCCTTTCT
CTTACTCTGGGCGAAGGTACGATTAGTGTGCTTCATCAAGGGTCGAAAAT
CGCAAGCTCCCATCGCCCCTTCCGATGCCGTGGCGGCTGCGCTGTTGAAC
AAGCGATACGGAGAGCATAAATACTTACATGCCAATGGCTTGCGCTTCCA
TTATGTCGAGAAGGGCACGCCGTCCGCACACGCGCCGTTGGTCTTGTTCT
TGCATGTCTTCCAAGTTCCCACTCTCCCCGAAACCATGCTGAGCGCCGGA
CAATGGCAAGCCGTTGGGGCGTGCTTCCGAGGGAAACGCTCCGGGGTTAA
ACGGTATGATGCCGCCATGTCAGAAACGGACCTGGCCGTTATGAAGCACG
CCTTCTCCCAACGGGGGGTGGTGTCAGGGGCCGTGAATTATTATCGGGCT
AACATTTTCCGGAGCAAGGAGGAGGGGGTGGAGAGAGCGACAGAGGGGCG
GTTGGCGATGCCCGTGTTGTTGGTGTGGGGGTTGAAGGACACTGCGTTAG
GAGAGGAGCTGCTGGTGGGTGTTGACAAATACGTGGAGGAGGGAGAGCTG
AGGGTGGCGACTGTCGAGGATGCGAGCCACTGGGTTCAGGTGGATGCCTG
GAAGGAAACGTGTGACTTGGTGTGGCGGTTCGCAGTGCAAGTGCGGACGC
GCGGTGCGGGGAAAGGAGGGGAGGCTGGGAAAAATGGAGGAGGAGGAGGA
GGAAGTAGAGGAGGAGGAGGTGGTGGAGGAGATAATTACAAGGCGGCGTC
ATCGAACTTGTGAAAATCGCAGCGTACAATCTAGAGGTCCTGGTGTGCGA
TGTCCGGGAAGTGATCGACGCATTAGGCTACGGTCCTCAGGAGGATGGGC
AGGAGGGGAGGGGCTGTGTATTGGTAGGGCATGACTGGGGGGGAACGGTG
GCATGGACGGCGGCACACGTGCTAGGCCCGTCTCGGATCAAGGGCTTGTG
TGTCATGAACTGCCCACATCCCAAGGTATACATGGAGCAGGCGACGATGG
CCCAATTTTTCAAATCGTGGTATTTCTATTGCTTTCCTGAGTTCTGGTAC
TCGTGGCGCAATCAGCTTCATTTCTTGGGCACCCATGGCTTCCACACTGT
GGCTTTGGACATGAGGGGGTATGGGTGGACCGAAAAGCCGAAAGATGCCT
CTACACTCCTCCTCCTCCGCGCCCTCCGACCCCTCCTTCTCCTTTTCATT
CCTGCCCAACCCATCCTCTGCCGTGCATCGCTTCACAGCCAGCCTACTCA
CCCACCCGTTGATCGTCCCGCTCATCTCCTACGTCTACGCCTGTCCCTTT
CTCTTACTCTGGGCGAAGGTACGATTAGTGTGCTTCATCAAGGGTCGAAA
ATCGCAAGCTCCCATCGCCCCTTCCGATGCCGTGGCGGCTGCGCTGTTGA
ACAAGCGATACGGAGAGCATAAATACTTACATGCCAATGGCTTGCGCTTC
CATTATGTCGAGAAGGGCACGCCGTCCGCACACGCGCCGTTGGTCTTGTT
CTTGCATG back to top
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