jgi.p|Nanoce1779_2|627006, mRNA_1708 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|627006
Unique Name	mRNA_1708
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2220
Alignment location	scaffold_1:1292796..1295015 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	627092
Track	FilteredModels2
ProteinId	627006

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_1	supercontig	scaffold_1:1292796..1295015 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|627006	gene_1708	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|627006	mRNA_1708-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_1708	CDS_1708	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_1:1292796..1295015+
coding sequence from alignment at scaffold_1:1292796..1295015+

mRNA sequence

>mRNA_1708 ID=mRNA_1708|Name=jgi.p|Nanoce1779_2|627006|organism=Nannochloropsis oceanica|type=mRNA|length=2220bp
ATGTCACAATGCAAGCGGCTCCTAGACGATTCGGGAGACGGTGGGCCGCG
AGCTTCATCAACAGCAGCAGCAGAGGTCGGGGCAGCGGGGGGAGATGGGC
AGCAGCAGCAGCAACAGCAAAACGGAGGAGGCCAGATGTCCGACACAACA
ACTACAGTTAGAAGCAGCACCACCAACAACGGCAGAGGCCTTATGACACG
CCGACAGGGCGACGGGCAAGGCAGTGGAAACAATTGGGGTGGGAACGACG
AAGAGGAGGATGGGCAAGGGGAAGAGCGCCCGTGGGTGCCAGGGGAGGAA
CTAAGGTATTGGGCCGTGACTCGAACACTGCGTCTCGCACTCTTCGTGGC
GTTCGTGGGCTTGGTACGCTCTGTCTTATCGTCGCAGGCCATATTCTACC
TCGTCCTGTGGGTGGCGTCTCTGACGACCATGGCCTCGATGACTTACCAA
CGTGTGCGGGAACGAGGCCTGCTCACCTACCTGCCCCCCTCGACCCAAGA
ACTCCTCCTGCAGACCTCGCTGCTGGACTGGCTCCTCGACACATCCATGG
CTGATCGTCTGAAGCCATATGCCGTCATCGGGATGGGATTGAATGAGGAG
GAACGCTCCTTTCTCATCAGCAGTCTTCCTCCACCGGAGCAACGAGCTTT
GACGGCGCCTGGTTTATTGAACACCTTGCCGGCTTCCGTGCAAAGCATGC
TCCTGCCACGCGGTGGTTGCAGCGATGCCGGTGGCATGCTCATGTCAGGA
GGGAACGCATGTGTACCGGCAACACCAGCTGCGGCATGTATCGCGACTGC
TGCTTCTGCTGGAGGTGGAGGAGAGGGGAGGGAAGGATGGCGACATCGCA
TTGAGGAGATCAGTGAGATGCAAGCCGCGGAGATGACCCGTCGACGACTA
CAAGAAATGGACGAGCGACGACAGCGGGAGGAAGGGAGGGAGGGAGAGGA
GGAAGCGGAGGAAGTGATGACGGCATCTGAGACAGACGAAGAGGACGAGT
ACCTGGACGAGCAGGAGGACGGGGGGGAGAGCGGGCGGAGGAGTAGTAAT
CGGATGACGCATCAGTTGCCGCGACAGGTGGGCATGGCTATGGGCAGAAA
TCCGCAGCGGCGAACACCACAGCAAGGCAACGGCCTCCGGCCGGTTTTTC
CCCTCTCCTCTACCTCCTACCACCACCACCAGCAAAACAGCAGCAGCAGG
AACACCCGCACCCTCACCACCGACACTACCACCCAATCTCCTCCTCCTCC
TCCTCTTTCTCGGCCAGTGTCAGAAAGCTGGCCCGCTCCCGGGGAAGTTG
AAGATGTCGCTGCCTACGTTCTTCAACGGCGCCTCCGCCGCGCCTGGGAG
CAAGCGGTGCGAGGAAGCGCAGATGCGATCGTCAGTGGAGTAACAGCCAG
CTTGAGAAGGCAATTGAGGGATAGACGGCAGGGGTTAGTATACGGAGGGG
TGGCCTTGGCGGGGGGGGCGGTAGTGGCGCAGATTTGGCGAGGGAGGGGA
GGGGGGGCGGGAGGGGTAGTGCAGCGGTATGGGCGGATGGCAGTTTTAGC
AGGGACGGTGGTCTTGGCTTTGCATGATGCATATTTTGCCTCAAAGGAGG
AGGAGGAAGAGGGGGAGGAGGAGGAGGAGGAAAGTGCAGAGGGATTATGG
GAGGAGGAGGAGGGCGAGGAGGGCTTGCTTGGCGCTGATTTTGCCGCTGG
TGTGAGCATGGGCCAACAACGACGAGGACGAGGACGAGGACAAGGACGAC
CTCGACAACAGCAGCCTCGGGTATGGATGCAGTGGGGGGCTTTCTTTTTC
CTCCTCCTCCTCATTCGCACCGGTCGCCTGGCGCCGATATTGCGGCGTTT
GCGGGCGGCCTTTCCGGCTTCCTTCCCCTCGTCCTCCTCGTCTTCCTCCT
CCTCCTCCTTGCTGTTGGGTGCGAGCGGACGGAGGTAGACATAGGGAATG
ATAAATATTGGATTCGTATGTATGTGTAGGTGGGAAGATGTGAATAATCA
AAAGAAACGACACGACAGCTTTTGCCGTTACGCGCATTGAGGGTGCTTCC
CAACCATGCCGTCTGCAGTATGTGCCTGCCGTGACCCAGCGAGTCACCCG
AGCAATCAAAGTATTTTCAGGCGAGGGAGAAAGGAAAAGACGAGCTCCAC
TTCGCACAGGCGTGGCCCTCGTTTGGGGGCAACAAAAGAAAGAAAGAGGG
AGACGCGCGTTCAGCGAGAC

protein sequence of jgi.p|Nanoce1779_2|627006

>mRNA_1708-protein ID=mRNA_1708-protein|Name=jgi.p|Nanoce1779_2|627006|organism=Nannochloropsis oceanica|type=polypeptide|length=646bp
MSQCKRLLDDSGDGGPRASSTAAAEVGAAGGDGQQQQQQQNGGGQMSDTT
TTVRSSTTNNGRGLMTRRQGDGQGSGNNWGGNDEEEDGQGEERPWVPGEE
LRYWAVTRTLRLALFVAFVGLVRSVLSSQAIFYLVLWVASLTTMASMTYQ
RVRERGLLTYLPPSTQELLLQTSLLDWLLDTSMADRLKPYAVIGMGLNEE
ERSFLISSLPPPEQRALTAPGLLNTLPASVQSMLLPRGGCSDAGGMLMSG
GNACVPATPAAACIATAASAGGGGEGREGWRHRIEEISEMQAAEMTRRRL
QEMDERRQREEGREGEEEAEEVMTASETDEEDEYLDEQEDGGESGRRSSN
RMTHQLPRQVGMAMGRNPQRRTPQQGNGLRPVFPLSSTSYHHHQQNSSSR
NTRTLTTDTTTQSPPPPPLSRPVSESWPAPGEVEDVAAYVLQRRLRRAWE
QAVRGSADAIVSGVTASLRRQLRDRRQGLVYGGVALAGGAVVAQIWRGRG
GGAGGVVQRYGRMAVLAGTVVLALHDAYFASKEEEEEGEEEEEESAEGLW
EEEEGEEGLLGADFAAGVSMGQQRRGRGRGQGRPRQQQPRVWMQWGAFFF
LLLLIRTGRLAPILRRLRAAFPASFPSSSSSSSSSSLLLGASGRR*

mRNA from alignment at scaffold_1:1292796..1295015+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_1708 ID=mRNA_1708|Name=jgi.p|Nanoce1779_2|627006|organism=Nannochloropsis oceanica|type=mRNA|length=2220bp|location=Sequence derived from alignment at scaffold_1:1292796..1295015+ (Nannochloropsis oceanica)
ATGTCACAATGCAAGCGGCTCCTAGACGATTCGGGAGACGGTGGGCCGCG
AGCTTCATCAACAGCAGCAGCAGAGGTCGGGGCAGCGGGGGGAGATGGGC
AGCAGCAGCAGCAACAGCAAAACGGAGGAGGCCAGATGTCCGACACAACA
ACTACAGTTAGAAGCAGCACCACCAACAACGGCAGAGGCCTTATGACACG
CCGACAGGGCGACGGGCAAGGCAGTGGAAACAATTGGGGTGGGAACGACG
AAGAGGAGGATGGGCAAGGGGAAGAGCGCCCGTGGGTGCCAGGGGAGGAA
CTAAGGTATTGGGCCGTGACTCGAACACTGCGTCTCGCACTCTTCGTGGC
GTTCGTGGGCTTGGTACGCTCTGTCTTATCGTCGCAGGCCATATTCTACC
TCGTCCTGTGGGTGGCGTCTCTGACGACCATGGCCTCGATGACTTACCAA
CGTGTGCGGGAACGAGGCCTGCTCACCTACCTGCCCCCCTCGACCCAAGA
ACTCCTCCTGCAGACCTCGCTGCTGGACTGGCTCCTCGACACATCCATGG
CTGATCGTCTGAAGCCATATGCCGTCATCGGGATGGGATTGAATGAGGAG
GAACGCTCCTTTCTCATCAGCAGTCTTCCTCCACCGGAGCAACGAGCTTT
GACGGCGCCTGGTTTATTGAACACCTTGCCGGCTTCCGTGCAAAGCATGC
TCCTGCCACGCGGTGGTTGCAGCGATGCCGGTGGCATGCTCATGTCAGGA
GGGAACGCATGTGTACCGGCAACACCAGCTGCGGCATGTATCGCGACTGC
TGCTTCTGCTGGAGGTGGAGGAGAGGGGAGGGAAGGATGGCGACATCGCA
TTGAGGAGATCAGTGAGATGCAAGCCGCGGAGATGACCCGTCGACGACTA
CAAGAAATGGACGAGCGACGACAGCGGGAGGAAGGGAGGGAGGGAGAGGA
GGAAGCGGAGGAAGTGATGACGGCATCTGAGACAGACGAAGAGGACGAGT
ACCTGGACGAGCAGGAGGACGGGGGGGAGAGCGGGCGGAGGAGTAGTAAT
CGGATGACGCATCAGTTGCCGCGACAGGTGGGCATGGCTATGGGCAGAAA
TCCGCAGCGGCGAACACCACAGCAAGGCAACGGCCTCCGGCCGGTTTTTC
CCCTCTCCTCTACCTCCTACCACCACCACCAGCAAAACAGCAGCAGCAGG
AACACCCGCACCCTCACCACCGACACTACCACCCAATCTCCTCCTCCTCC
TCCTCTTTCTCGGCCAGTGTCAGAAAGCTGGCCCGCTCCCGGGGAAGTTG
AAGATGTCGCTGCCTACGTTCTTCAACGGCGCCTCCGCCGCGCCTGGGAG
CAAGCGGTGCGAGGAAGCGCAGATGCGATCGTCAGTGGAGTAACAGCCAG
CTTGAGAAGGCAATTGAGGGATAGACGGCAGGGGTTAGTATACGGAGGGG
TGGCCTTGGCGGGGGGGGCGGTAGTGGCGCAGATTTGGCGAGGGAGGGGA
GGGGGGGCGGGAGGGGTAGTGCAGCGGTATGGGCGGATGGCAGTTTTAGC
AGGGACGGTGGTCTTGGCTTTGCATGATGCATATTTTGCCTCAAAGGAGG
AGGAGGAAGAGGGGGAGGAGGAGGAGGAGGAAAGTGCAGAGGGATTATGG
GAGGAGGAGGAGGGCGAGGAGGGCTTGCTTGGCGCTGATTTTGCCGCTGG
TGTGAGCATGGGCCAACAACGACGAGGACGAGGACGAGGACAAGGACGAC
CTCGACAACAGCAGCCTCGGGTATGGATGCAGTGGGGGGCTTTCTTTTTC
CTCCTCCTCCTCATTCGCACCGGTCGCCTGGCGCCGATATTGCGGCGTTT
GCGGGCGGCCTTTCCGGCTTCCTTCCCCTCGTCCTCCTCGTCTTCCTCCT
CCTCCTCCTTGCTGTTGGGTGCGAGCGGACGGAGGTAGACATAGGGAATG
ATAAATATTGGATTCGTATGTATGTGTAGGTGGGAAGATGTGAATAATCA
AAAGAAACGACACGACAGCTTTTGCCGTTACGCGCATTGAGGGTGCTTCC
CAACCATGCCGTCTGCAGTATGTGCCTGCCGTGACCCAGCGAGTCACCCG
AGCAATCAAAGTATTTTCAGGCGAGGGAGAAAGGAAAAGACGAGCTCCAC
TTCGCACAGGCGTGGCCCTCGTTTGGGGGCAACAAAAGAAAGAAAGAGGG
AGACGCGCGTTCAGCGAGAC

Coding sequence (CDS) from alignment at scaffold_1:1292796..1295015+

>mRNA_1708 ID=mRNA_1708|Name=jgi.p|Nanoce1779_2|627006|organism=Nannochloropsis oceanica|type=CDS|length=1938bp|location=Sequence derived from alignment at scaffold_1:1292796..1295015+ (Nannochloropsis oceanica)
ATGTCACAATGCAAGCGGCTCCTAGACGATTCGGGAGACGGTGGGCCGCG
AGCTTCATCAACAGCAGCAGCAGAGGTCGGGGCAGCGGGGGGAGATGGGC
AGCAGCAGCAGCAACAGCAAAACGGAGGAGGCCAGATGTCCGACACAACA
ACTACAGTTAGAAGCAGCACCACCAACAACGGCAGAGGCCTTATGACACG
CCGACAGGGCGACGGGCAAGGCAGTGGAAACAATTGGGGTGGGAACGACG
AAGAGGAGGATGGGCAAGGGGAAGAGCGCCCGTGGGTGCCAGGGGAGGAA
CTAAGGTATTGGGCCGTGACTCGAACACTGCGTCTCGCACTCTTCGTGGC
GTTCGTGGGCTTGGTACGCTCTGTCTTATCGTCGCAGGCCATATTCTACC
TCGTCCTGTGGGTGGCGTCTCTGACGACCATGGCCTCGATGACTTACCAA
CGTGTGCGGGAACGAGGCCTGCTCACCTACCTGCCCCCCTCGACCCAAGA
ACTCCTCCTGCAGACCTCGCTGCTGGACTGGCTCCTCGACACATCCATGG
CTGATCGTCTGAAGCCATATGCCGTCATCGGGATGGGATTGAATGAGGAG
GAACGCTCCTTTCTCATCAGCAGTCTTCCTCCACCGGAGCAACGAGCTTT
GACGGCGCCTGGTTTATTGAACACCTTGCCGGCTTCCGTGCAAAGCATGC
TCCTGCCACGCGGTGGTTGCAGCGATGCCGGTGGCATGCTCATGTCAGGA
GGGAACGCATGTGTACCGGCAACACCAGCTGCGGCATGTATCGCGACTGC
TGCTTCTGCTGGAGGTGGAGGAGAGGGGAGGGAAGGATGGCGACATCGCA
TTGAGGAGATCAGTGAGATGCAAGCCGCGGAGATGACCCGTCGACGACTA
CAAGAAATGGACGAGCGACGACAGCGGGAGGAAGGGAGGGAGGGAGAGGA
GGAAGCGGAGGAAGTGATGACGGCATCTGAGACAGACGAAGAGGACGAGT
ACCTGGACGAGCAGGAGGACGGGGGGGAGAGCGGGCGGAGGAGTAGTAAT
CGGATGACGCATCAGTTGCCGCGACAGGTGGGCATGGCTATGGGCAGAAA
TCCGCAGCGGCGAACACCACAGCAAGGCAACGGCCTCCGGCCGGTTTTTC
CCCTCTCCTCTACCTCCTACCACCACCACCAGCAAAACAGCAGCAGCAGG
AACACCCGCACCCTCACCACCGACACTACCACCCAATCTCCTCCTCCTCC
TCCTCTTTCTCGGCCAGTGTCAGAAAGCTGGCCCGCTCCCGGGGAAGTTG
AAGATGTCGCTGCCTACGTTCTTCAACGGCGCCTCCGCCGCGCCTGGGAG
CAAGCGGTGCGAGGAAGCGCAGATGCGATCGTCAGTGGAGTAACAGCCAG
CTTGAGAAGGCAATTGAGGGATAGACGGCAGGGGTTAGTATACGGAGGGG
TGGCCTTGGCGGGGGGGGCGGTAGTGGCGCAGATTTGGCGAGGGAGGGGA
GGGGGGGCGGGAGGGGTAGTGCAGCGGTATGGGCGGATGGCAGTTTTAGC
AGGGACGGTGGTCTTGGCTTTGCATGATGCATATTTTGCCTCAAAGGAGG
AGGAGGAAGAGGGGGAGGAGGAGGAGGAGGAAAGTGCAGAGGGATTATGG
GAGGAGGAGGAGGGCGAGGAGGGCTTGCTTGGCGCTGATTTTGCCGCTGG
TGTGAGCATGGGCCAACAACGACGAGGACGAGGACGAGGACAAGGACGAC
CTCGACAACAGCAGCCTCGGGTATGGATGCAGTGGGGGGCTTTCTTTTTC
CTCCTCCTCCTCATTCGCACCGGTCGCCTGGCGCCGATATTGCGGCGTTT
GCGGGCGGCCTTTCCGGCTTCCTTCCCCTCGTCCTCCTCGTCTTCCTCCT
CCTCCTCCTTGCTGTTGGGTGCGAGCGGACGGAGGTAG

Synonyms

Publications