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Properties
| Property Name | Value |
|---|
| TranscriptId | 627091 |
| Track | FilteredModels2 |
| ProteinId | 627005 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_1 | supercontig | scaffold_1:1290244..1292863 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_1707 ID=mRNA_1707|Name=jgi.p|Nanoce1779_2|627005|organism=Nannochloropsis oceanica|type=mRNA|length=2276bp
GCTGCTGTTGATGAAGCTCGCGGCCCACCGTCTCCCGAATCGTCTAGGAG
CCGCTTGCATTGTGACATCCTGTGTGCTGGAGGGGTGAGAGGGGTCCAAT
GAGCGTACGTGGGCATATAAACAAGGAATTGAATTTGTCCCCATATAACA
GCTGACTGCTGTCATCATCACGAGGACGTTTGCTACTTCGCGTGCATGAA
CATTTCCCATTCACGCCAAGCACATAAACATCGGAAAAACAGTGGAACGT
TCGTCATGATCATATCCAAGCCCTAGGACGACGACACCGGAGATCTGCCA
AAGTCAAATTCAAGACAGGCGAGCAAGCATGAAGCCTCCTGCGCCTCCCT
CCTGCCCTCTAGTTCACTCCAACAATAATGCCACGCCCTCCGCCAGCAGC
TACAACCCCACAGACAACAACGGCAACAATGACAACAACAACAACAATGA
CAAAATCAACAATGCCAACAATGAGATCAACGAGGCGGACCTGTACGGGG
CATGCCGCCCGGTGAAAAGCTACCAAAAGCTAAATCAAATCGGGGAAGGA
GCGTATGGCACCGTGTACCGCGGCGTAGACAAGTCCACCGGGAAAATGGT
GGCTCTGAAACGCGTGATTTTGCACAACGAGAAGCAGGATGGCTTTCCCC
TGACGTCTTTGAGGGAAATTCGCATGCTCAAGCTGATTGGTCGACACCCG
AATTGCGTGCGGTTGGAAGAGATTGCGGTGGGAAGGAAGCGGGATGGTGT
TTTCTTGGTATTTGAGTACTGCGAGCACGATATGGCCCACCTCATCGACC
ACATGAACACGCGTTTCACTTCGTCCGAGGTGAAGAACCTGATGCTACAG
CTGCTAAGGGGTGTGGCACACTTGCACGAGCACTGGATCATCCACCGGGA
CATAAAGATGAGCAACCTCCTCTATACCAACACTGGCTGCCTGAAGCTCG
CTGACTTCGGCCTCGCCCGTCTTTACGGCGCTCCTCCCGCACCCATGACC
CCTAAAGTTGTCACTCTTTGGTACCGAGCCCCGGAGTTGTTGTTGGGGTC
GGAGACGTATGACATTGCGATTGACATGTGGGCGGTAGGATGTATTTTGG
GGGAGTTGATGGCGTATGAACCCTTGTTGGCAGGTTCGAATGAATTGATG
CAGTTGGAGAAGATTTTTGAGCTATTGGGGAGTCCAAATGAGAGAATATG
GCCGGGGGTAGAGAGGCTACCGCACATAGCTTCGGGCATGGTGTCGTTGC
GGGGGGACAAGTACCCGTACAACACGGTGGCAACGCGCTTTCCTCATTTG
AGTGACGGAGGAGTGGATTTGATGAATTCCCTGTTGGCGTTTGACCCCAT
GAAAAGGTTGACCGCAACAGATGCGCAGCGGCACATCTTCTTCACGGAGG
AGCGGCCTTATCCGAAGGAGGATTCGCTTATGCCTACTTATGCGTCGAGG
CACGATGAGATGGAGGCGAGGGAGAAGGAAAGGGCACGAGTGGCCGAGGG
GCAGAAATCCTCGACCGGGATGTTGTTGAAAAGCGACTTTTTTGCATCGG
CGCCATCCTCGGCGAGGGGACAAGGAGGAGGGGATGGAGGAGGAGGGGGG
GCAAGAAGAAGTATCGCGGTTGGTGGAAGGGGAGACGGGTGGCCAAGAGG
GGGGAGGGGACGGATTGTGCCGGTGCTGAAGAAGGCCAAGCCTTAGGGAA
TTCAAATGTGGGTCAGAGAATTGTGAATGAACGTGAAGGACAGCCAGCAC
CGGCATCAGCACCAGATACGGCGGTGGCCATCGCTCGAAGCAGCAGTAGC
CGCCGCTACCACGAGCCAGGCAGCTGCACGAGCTACAGAAGCTACAGCAG
CACCAGCCTCACCAGCATCAGCATCCTTCTCTCAGCGGACAACGGAGCGT
CATTAAATGAGCTTTTGCTTTGCAACCAATCCCTTATGCGGCGTTCTGGT
TTACATAGATCTATGAAGTCTGAGCAGGCAATGTCGCTCGCGGCAGTGGT
TTGAGTTCTAGAAGCACGAAGACGTAGCACTAGCAGGCAGGAAGGGTAGA
GACTCGCTCATTTTATTACTTGCCTGTTGCAAGTTCCACGAATAGCAGCC
CTAGCCCTAGCTACAGTTGAAAAACTGCGGTCGTGTCAAAAGAGCAGTAA
AACCAGCAGCAGCAGAAATAAGGTGAGGAGAAGTAGTAGCCGCAGCAGCC
GCAATAGCCGCAGCAGGAGATGCACAAATTCAAGAAATTGCAAGAATAGG
AAGAGCAGGACTATGTTAATGGAAAA back to topprotein sequence of jgi.p|Nanoce1779_2|627005 >mRNA_1707-protein ID=mRNA_1707-protein|Name=jgi.p|Nanoce1779_2|627005|organism=Nannochloropsis oceanica|type=polypeptide|length=456bp
MKPPAPPSCPLVHSNNNATPSASSYNPTDNNGNNDNNNNNDKINNANNEI
NEADLYGACRPVKSYQKLNQIGEGAYGTVYRGVDKSTGKMVALKRVILHN
EKQDGFPLTSLREIRMLKLIGRHPNCVRLEEIAVGRKRDGVFLVFEYCEH
DMAHLIDHMNTRFTSSEVKNLMLQLLRGVAHLHEHWIIHRDIKMSNLLYT
NTGCLKLADFGLARLYGAPPAPMTPKVVTLWYRAPELLLGSETYDIAIDM
WAVGCILGELMAYEPLLAGSNELMQLEKIFELLGSPNERIWPGVERLPHI
ASGMVSLRGDKYPYNTVATRFPHLSDGGVDLMNSLLAFDPMKRLTATDAQ
RHIFFTEERPYPKEDSLMPTYASRHDEMEAREKERARVAEGQKSSTGMLL
KSDFFASAPSSARGQGGGDGGGGGARRSIAVGGRGDGWPRGGRGRIVPVL
KKAKP* back to topmRNA from alignment at scaffold_1:1290244..1292863- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_1707 ID=mRNA_1707|Name=jgi.p|Nanoce1779_2|627005|organism=Nannochloropsis oceanica|type=mRNA|length=2620bp|location=Sequence derived from alignment at scaffold_1:1290244..1292863- (Nannochloropsis oceanica)
GCTGCTGTTGATGAAGCTCGCGGCCCACCGTCTCCCGAATCGTCTAGGAG
CCGCTTGCATTGTGACATCCTGTGTGCTGGAGGGGTGAGAGGGGTCCAAT
GAGCGTACGTGGGCATATAAACAAGGAATTGAATTTGTCCCCATATAACA
GCTGACTGCTGTCATCATCACGAGGACGTTTGCTACTTCGCGTGCATGAA
CATTTCCCATTCACGCCAAGCACATAAACATCGGAAAAACAGTGGAACGT
TCGTCATGATCATATCCAAGCCCTAGGACGACGACACCGGAGATCTGCCA
AAGTCAAATTCAAGACAGGCGAGCAAGCATGAAGCCTCCTGCGCCTCCCT
CCTGCCCTCTAGTTCACTCCAACAATAATGCCACGCCCTCCGCCAGCAGC
TACAACCCCACAGACAACAACGGCAACAATGACAACAACAACAACAATGA
CAAAATCAACAATGCCAACAATGAGATCAACGAGGCGGACCTGTACGGGG
CATGCCGCCCGGTGAAAAGCTACCAAAAGCTAAATCAAATCGGGGAAGGA
GCGTATGGCACCGTGTACCGCGGCGTAGACAAGTCCACCGGGAAAATGGT
GGCTCTGAAACGCGTGATTTTGCACAACGAGAAGCAGGATGGCTTTCCCC
TGACGTCTTTGAGGGAAATTCGCATGCTCAAGCTGATTGGTCGACACCCG
AATTGCGTGCGGTTGGAAGAGATTGCGGTGGGAAGGAAGCGGGATGGTGT
TTTCTTGGTATTTGAGTACTGCGAGGTAAGCCAATTTGATTGCAAGGATA
TCGACAATCTCTATTGAAGATTTTCCGCGTCTAGATGTTATGACTGTCCC
CGTCCCCCGTGTCCTGCCACTGCTCTGATATCGACACGACCCCAAATGCT
CTCTTGAACTCACACATTCACCTTTTTCCTTTCCCTCCTCTCTTTCTTTC
ACCTTACTCTATAGCACGATATGGCCCACCTCATCGACCACATGAACACG
CGTTTCACTTCGTCCGAGGTGAAGAACCTGATGCTACAGCTGCTAAGGGG
TGTGGCACACTTGCACGAGCACTGGATCATCCACCGGGACATAAAGATGA
GCAACCTCCTCTATACCAACACTGGTAAGCACGGAGGAAAAGAAGGAGGG
CAACAACGATGGGAAAGATGTCCGCACCTCATATATCAATATGCATATTG
TCTTTGCATGTCTTCATCCTCTCCCTTAACCCACTCTCCTCCCCTCCTTC
GCTCCCTCCCTTCCCTCCCTCCCCACCAGGCTGCCTGAAGCTCGCTGACT
TCGGCCTCGCCCGTCTTTACGGCGCTCCTCCCGCACCCATGACCCCTAAA
GTTGTCACTCTTTGGTACCGAGCCCCGGAGTTGTTGTTGGGGTCGGAGAC
GTATGACATTGCGATTGACATGTGGGCGGTAGGATGTATTTTGGGGGAGT
TGATGGCGTATGAACCCTTGTTGGCAGGTTCGAATGAATTGATGCAGTTG
GAGAAGATTTTTGAGCTATTGGGGAGTCCAAATGAGAGAATATGGCCGGG
GGTAGAGAGGCTACCGCACATAGCTTCGGGCATGGTGTCGTTGCGGGGGG
ACAAGTACCCGTACAACACGGTGGCAACGCGCTTTCCTCATTTGAGTGAC
GGAGGAGTGGATTTGATGAATTCCCTGTTGGCGTTTGACCCCATGAAAAG
GTTGACCGCAACAGATGCGCAGCGGCACATCTTCTTCACGGAGGAGCGGC
CTTATCCGAAGGAGGATTCGCTTATGCCTACTTATGCGTCGAGGCACGAT
GAGATGGAGGCGAGGGAGAAGGAAAGGGCACGAGTGGCCGAGGGGCAGAA
ATCCTCGACCGGGATGTTGTTGAAAAGCGACTTTTTTGCATCGGCGCCAT
CCTCGGCGAGGGGACAAGGAGGAGGGGATGGAGGAGGAGGGGGGGCAAGA
AGAAGTATCGCGGTTGGTGGAAGGGGAGACGGGTGGCCAAGAGGGGGGAG
GGGACGGATTGTGCCGGTGCTGAAGAAGGCCAAGCCTTAGGGAATTCAAA
TGTGGGTCAGAGAATTGTGAATGAACGTGAAGGACAGCCAGCACCGGCAT
CAGCACCAGATACGGCGGTGGCCATCGCTCGAAGCAGCAGTAGCCGCCGC
TACCACGAGCCAGGCAGCTGCACGAGCTACAGAAGCTACAGCAGCACCAG
CCTCACCAGCATCAGCATCCTTCTCTCAGCGGACAACGGAGCGTCATTAA
ATGAGCTTTTGCTTTGCAACCAATCCCTTATGCGGCGTTCTGGTTTACAT
AGATCTATGAAGTCTGAGCAGGCAATGTCGCTCGCGGCAGTGGTTTGAGT
TCTAGAAGCACGAAGACGTAGCACTAGCAGGCAGGAAGGGTAGAGACTCG
CTCATTTTATTACTTGCCTGTTGCAAGTTCCACGAATAGCAGCCCTAGCC
CTAGCTACAGTTGAAAAACTGCGGTCGTGTCAAAAGAGCAGTAAAACCAG
CAGCAGCAGAAATAAGGTGAGGAGAAGTAGTAGCCGCAGCAGCCGCAATA
GCCGCAGCAGGAGATGCACAAATTCAAGAAATTGCAAGAATAGGAAGAGC
AGGACTATGTTAATGGAAAA back to topCoding sequence (CDS) from alignment at scaffold_1:1290244..1292863- >mRNA_1707 ID=mRNA_1707|Name=jgi.p|Nanoce1779_2|627005|organism=Nannochloropsis oceanica|type=CDS|length=4104bp|location=Sequence derived from alignment at scaffold_1:1290244..1292863- (Nannochloropsis oceanica)
GCTGCCTGAAGCTCGCTGACTTCGGCCTCGCCCGTCTTTACGGCGCTCCT
CCCGCACCCATGACCCCTAAAGTTGTCACTCTTTGGTACCGAGCCCCGGA
GTTGTTGTTGGGGTCGGAGACGTATGACATTGCGATTGACATGTGGGCGG
TAGGATGTATTTTGGGGGAGTTGATGGCGTATGAACCCTTGTTGGCAGGT
TCGAATGAATTGATGCAGTTGGAGAAGATTTTTGAGCTATTGGGGAGTCC
AAATGAGAGAATATGGCCGGGGGTAGAGAGGCTACCGCACATAGCTTCGG
GCATGGTGTCGTTGCGGGGGGACAAGTACCCGTACAACACGGTGGCAACG
CGCTTTCCTCATTTGAGTGACGGAGGAGTGGATTTGATGAATTCCCTGTT
GGCGTTTGACCCCATGAAAAGGTTGACCGCAACAGATGCGCAGCGGCACA
TCTTCTTCACGGAGGAGCGGCCTTATCCGAAGGAGGATTCGCTTATGCCT
ACTTATGCGTCGAGGCACGATGAGATGGAGGCGAGGGAGAAGGAAAGGGC
ACGAGTGGCCGAGGGGCAGAAATCCTCGACCGGGATGTTGTTGAAAAGCG
ACTTTTTTGCATCGGCGCCATCCTCGGCGAGGGGACAAGGAGGAGGGGAT
GGAGGAGGAGGGGGGGCAAGAAGAAGTATCGCGGTTGGTGGAAGGGGAGA
CGGGTGGCCAAGAGGGGGGAGGGGACGGATTGTGCCGGTGCTGAAGAAGG
CCAAGCCTTAGCACGATATGGCCCACCTCATCGACCACATGAACACGCGT
TTCACTTCGTCCGAGGTGAAGAACCTGATGCTACAGCTGCTAAGGGGTGT
GGCACACTTGCACGAGCACTGGATCATCCACCGGGACATAAAGATGAGCA
ACCTCCTCTATACCAACACTGATGAAGCCTCCTGCGCCTCCCTCCTGCCC
TCTAGTTCACTCCAACAATAATGCCACGCCCTCCGCCAGCAGCTACAACC
CCACAGACAACAACGGCAACAATGACAACAACAACAACAATGACAAAATC
AACAATGCCAACAATGAGATCAACGAGGCGGACCTGTACGGGGCATGCCG
CCCGGTGAAAAGCTACCAAAAGCTAAATCAAATCGGGGAAGGAGCGTATG
GCACCGTGTACCGCGGCGTAGACAAGTCCACCGGGAAAATGGTGGCTCTG
AAACGCGTGATTTTGCACAACGAGAAGCAGGATGGCTTTCCCCTGACGTC
TTTGAGGGAAATTCGCATGCTCAAGCTGATTGGTCGACACCCGAATTGCG
TGCGGTTGGAAGAGATTGCGGTGGGAAGGAAGCGGGATGGTGTTTTCTTG
GTATTTGAGTACTGCGAGGCTGCCTGAAGCTCGCTGACTTCGGCCTCGCC
CGTCTTTACGGCGCTCCTCCCGCACCCATGACCCCTAAAGTTGTCACTCT
TTGGTACCGAGCCCCGGAGTTGTTGTTGGGGTCGGAGACGTATGACATTG
CGATTGACATGTGGGCGGTAGGATGTATTTTGGGGGAGTTGATGGCGTAT
GAACCCTTGTTGGCAGGTTCGAATGAATTGATGCAGTTGGAGAAGATTTT
TGAGCTATTGGGGAGTCCAAATGAGAGAATATGGCCGGGGGTAGAGAGGC
TACCGCACATAGCTTCGGGCATGGTGTCGTTGCGGGGGGACAAGTACCCG
TACAACACGGTGGCAACGCGCTTTCCTCATTTGAGTGACGGAGGAGTGGA
TTTGATGAATTCCCTGTTGGCGTTTGACCCCATGAAAAGGTTGACCGCAA
CAGATGCGCAGCGGCACATCTTCTTCACGGAGGAGCGGCCTTATCCGAAG
GAGGATTCGCTTATGCCTACTTATGCGTCGAGGCACGATGAGATGGAGGC
GAGGGAGAAGGAAAGGGCACGAGTGGCCGAGGGGCAGAAATCCTCGACCG
GGATGTTGTTGAAAAGCGACTTTTTTGCATCGGCGCCATCCTCGGCGAGG
GGACAAGGAGGAGGGGATGGAGGAGGAGGGGGGGCAAGAAGAAGTATCGC
GGTTGGTGGAAGGGGAGACGGGTGGCCAAGAGGGGGGAGGGGACGGATTG
TGCCGGTGCTGAAGAAGGCCAAGCCTTAGCACGATATGGCCCACCTCATC
GACCACATGAACACGCGTTTCACTTCGTCCGAGGTGAAGAACCTGATGCT
ACAGCTGCTAAGGGGTGTGGCACACTTGCACGAGCACTGGATCATCCACC
GGGACATAAAGATGAGCAACCTCCTCTATACCAACACTGATGAAGCCTCC
TGCGCCTCCCTCCTGCCCTCTAGTTCACTCCAACAATAATGCCACGCCCT
CCGCCAGCAGCTACAACCCCACAGACAACAACGGCAACAATGACAACAAC
AACAACAATGACAAAATCAACAATGCCAACAATGAGATCAACGAGGCGGA
CCTGTACGGGGCATGCCGCCCGGTGAAAAGCTACCAAAAGCTAAATCAAA
TCGGGGAAGGAGCGTATGGCACCGTGTACCGCGGCGTAGACAAGTCCACC
GGGAAAATGGTGGCTCTGAAACGCGTGATTTTGCACAACGAGAAGCAGGA
TGGCTTTCCCCTGACGTCTTTGAGGGAAATTCGCATGCTCAAGCTGATTG
GTCGACACCCGAATTGCGTGCGGTTGGAAGAGATTGCGGTGGGAAGGAAG
CGGGATGGTGTTTTCTTGGTATTTGAGTACTGCGAGGCTGCCTGAAGCTC
GCTGACTTCGGCCTCGCCCGTCTTTACGGCGCTCCTCCCGCACCCATGAC
CCCTAAAGTTGTCACTCTTTGGTACCGAGCCCCGGAGTTGTTGTTGGGGT
CGGAGACGTATGACATTGCGATTGACATGTGGGCGGTAGGATGTATTTTG
GGGGAGTTGATGGCGTATGAACCCTTGTTGGCAGGTTCGAATGAATTGAT
GCAGTTGGAGAAGATTTTTGAGCTATTGGGGAGTCCAAATGAGAGAATAT
GGCCGGGGGTAGAGAGGCTACCGCACATAGCTTCGGGCATGGTGTCGTTG
CGGGGGGACAAGTACCCGTACAACACGGTGGCAACGCGCTTTCCTCATTT
GAGTGACGGAGGAGTGGATTTGATGAATTCCCTGTTGGCGTTTGACCCCA
TGAAAAGGTTGACCGCAACAGATGCGCAGCGGCACATCTTCTTCACGGAG
GAGCGGCCTTATCCGAAGGAGGATTCGCTTATGCCTACTTATGCGTCGAG
GCACGATGAGATGGAGGCGAGGGAGAAGGAAAGGGCACGAGTGGCCGAGG
GGCAGAAATCCTCGACCGGGATGTTGTTGAAAAGCGACTTTTTTGCATCG
GCGCCATCCTCGGCGAGGGGACAAGGAGGAGGGGATGGAGGAGGAGGGGG
GGCAAGAAGAAGTATCGCGGTTGGTGGAAGGGGAGACGGGTGGCCAAGAG
GGGGGAGGGGACGGATTGTGCCGGTGCTGAAGAAGGCCAAGCCTTAGCAC
GATATGGCCCACCTCATCGACCACATGAACACGCGTTTCACTTCGTCCGA
GGTGAAGAACCTGATGCTACAGCTGCTAAGGGGTGTGGCACACTTGCACG
AGCACTGGATCATCCACCGGGACATAAAGATGAGCAACCTCCTCTATACC
AACACTGATGAAGCCTCCTGCGCCTCCCTCCTGCCCTCTAGTTCACTCCA
ACAATAATGCCACGCCCTCCGCCAGCAGCTACAACCCCACAGACAACAAC
GGCAACAATGACAACAACAACAACAATGACAAAATCAACAATGCCAACAA
TGAGATCAACGAGGCGGACCTGTACGGGGCATGCCGCCCGGTGAAAAGCT
ACCAAAAGCTAAATCAAATCGGGGAAGGAGCGTATGGCACCGTGTACCGC
GGCGTAGACAAGTCCACCGGGAAAATGGTGGCTCTGAAACGCGTGATTTT
GCACAACGAGAAGCAGGATGGCTTTCCCCTGACGTCTTTGAGGGAAATTC
GCATGCTCAAGCTGATTGGTCGACACCCGAATTGCGTGCGGTTGGAAGAG
ATTGCGGTGGGAAGGAAGCGGGATGGTGTTTTCTTGGTATTTGAGTACTG
CGAG back to top
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