jgi.p|Nanoce1779_2|622252, mRNA_1706 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|622252
Unique NamemRNA_1706
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1023
Alignment locationscaffold_1:1288650..1289672 -

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Properties
Property NameValue
TranscriptId622338
TrackFilteredModels2
ProteinId622252
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_1supercontigscaffold_1:1288650..1289672 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|622252gene_1706Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1706CDS_1706Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|622252mRNA_1706-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1706 ID=mRNA_1706|Name=jgi.p|Nanoce1779_2|622252|organism=Nannochloropsis oceanica|type=mRNA|length=1023bp
ATGAAGCAATTAGAGGAAGGCGCCGTACGGGAGATTGGCGAAGCTCAAGC
TGCCGGGCCTAAGTACATGCCTAGTACAGAGCCCAACGATCCCATTGTCC
AAGCCTTACAAAAAGTACTGGGTGTAGGGGAAGTAGAGAAGTGGGAGCTG
CTCGACTCACGATGGAACGGGAACGAGGTCTTCAAGTACACCACGGACAA
GGGCCTTTTCTTCATAAAGCTCAACCGCGTTGAGGACCCTTCCGTCTTCC
TTACTGAAGCTGTAGGGCTGAGTGCTTTGGCGGCCACCAACACTTTGCCC
TGCCCCAAGCCTCTGCACCTGGGCAAGCTCCCCAAAGTCGGGGACATCGG
CCCAGGGGCGTTCATGGTCTTGGAGCATTTAAAATTAAAGCCCTTCGGGA
TCATGCGAGGTGACATGCAACAGCAGCTGGGGAAAAAACTCGCTGCATTG
CACCTGGATCAGACGCATGCGGCGCTGCACAAGGGGAGGTTTGGTTTTTC
GGTGTCGAATTACCTGGCCTTGACCCCGTTGAACAACACGTGGACGGACT
CCTGGCCGGCCTTCCTCGCCCAACGGCTTGAGTCACAAGTGACGGCATTG
TACCAAGAAAAGCAGTATGGCCGAGCAGCGCTCAACGGCACTGATTTGGA
ATTGCGGGAACTGGGCTCGAGGGTGATTCAGGTGGTGCCTTCTTTGTTGT
TGGGGGTGGAGGTGAAACCCTCTCTTATTCATGGGGATTTGTGGATTGGT
AATGCAGGGGCAACAGATGAGGGGCCCGTTATTTTTGACCCGGCATGTTT
CTTCGGTCATCACGAGATGGAGCTGGCGATGATGACCTTGTTTGGTGGGT
TTCGGGATGATTTCTGGACGGCTTACCACGAGGTGTTGCCGAAGGCAAAG
GGGTTTGAGATGAGGCAGAAGCTGTACCAGTTTTATTATTACCTGAATCA
GTTGAATTTGTTTGGGGATGCCGGGGTGAAGAAGACGTGTGTGAGGCTAG
CGGAGGAGTTGCTGTTGATTTAG
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protein sequence of jgi.p|Nanoce1779_2|622252

>mRNA_1706-protein ID=mRNA_1706-protein|Name=jgi.p|Nanoce1779_2|622252|organism=Nannochloropsis oceanica|type=polypeptide|length=341bp
MKQLEEGAVREIGEAQAAGPKYMPSTEPNDPIVQALQKVLGVGEVEKWEL
LDSRWNGNEVFKYTTDKGLFFIKLNRVEDPSVFLTEAVGLSALAATNTLP
CPKPLHLGKLPKVGDIGPGAFMVLEHLKLKPFGIMRGDMQQQLGKKLAAL
HLDQTHAALHKGRFGFSVSNYLALTPLNNTWTDSWPAFLAQRLESQVTAL
YQEKQYGRAALNGTDLELRELGSRVIQVVPSLLLGVEVKPSLIHGDLWIG
NAGATDEGPVIFDPACFFGHHEMELAMMTLFGGFRDDFWTAYHEVLPKAK
GFEMRQKLYQFYYYLNQLNLFGDAGVKKTCVRLAEELLLI*
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mRNA from alignment at scaffold_1:1288650..1289672-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1706 ID=mRNA_1706|Name=jgi.p|Nanoce1779_2|622252|organism=Nannochloropsis oceanica|type=mRNA|length=1023bp|location=Sequence derived from alignment at scaffold_1:1288650..1289672- (Nannochloropsis oceanica)
ATGAAGCAATTAGAGGAAGGCGCCGTACGGGAGATTGGCGAAGCTCAAGC
TGCCGGGCCTAAGTACATGCCTAGTACAGAGCCCAACGATCCCATTGTCC
AAGCCTTACAAAAAGTACTGGGTGTAGGGGAAGTAGAGAAGTGGGAGCTG
CTCGACTCACGATGGAACGGGAACGAGGTCTTCAAGTACACCACGGACAA
GGGCCTTTTCTTCATAAAGCTCAACCGCGTTGAGGACCCTTCCGTCTTCC
TTACTGAAGCTGTAGGGCTGAGTGCTTTGGCGGCCACCAACACTTTGCCC
TGCCCCAAGCCTCTGCACCTGGGCAAGCTCCCCAAAGTCGGGGACATCGG
CCCAGGGGCGTTCATGGTCTTGGAGCATTTAAAATTAAAGCCCTTCGGGA
TCATGCGAGGTGACATGCAACAGCAGCTGGGGAAAAAACTCGCTGCATTG
CACCTGGATCAGACGCATGCGGCGCTGCACAAGGGGAGGTTTGGTTTTTC
GGTGTCGAATTACCTGGCCTTGACCCCGTTGAACAACACGTGGACGGACT
CCTGGCCGGCCTTCCTCGCCCAACGGCTTGAGTCACAAGTGACGGCATTG
TACCAAGAAAAGCAGTATGGCCGAGCAGCGCTCAACGGCACTGATTTGGA
ATTGCGGGAACTGGGCTCGAGGGTGATTCAGGTGGTGCCTTCTTTGTTGT
TGGGGGTGGAGGTGAAACCCTCTCTTATTCATGGGGATTTGTGGATTGGT
AATGCAGGGGCAACAGATGAGGGGCCCGTTATTTTTGACCCGGCATGTTT
CTTCGGTCATCACGAGATGGAGCTGGCGATGATGACCTTGTTTGGTGGGT
TTCGGGATGATTTCTGGACGGCTTACCACGAGGTGTTGCCGAAGGCAAAG
GGGTTTGAGATGAGGCAGAAGCTGTACCAGTTTTATTATTACCTGAATCA
GTTGAATTTGTTTGGGGATGCCGGGGTGAAGAAGACGTGTGTGAGGCTAG
CGGAGGAGTTGCTGTTGATTTAG
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Coding sequence (CDS) from alignment at scaffold_1:1288650..1289672-

>mRNA_1706 ID=mRNA_1706|Name=jgi.p|Nanoce1779_2|622252|organism=Nannochloropsis oceanica|type=CDS|length=1023bp|location=Sequence derived from alignment at scaffold_1:1288650..1289672- (Nannochloropsis oceanica)
ATGAAGCAATTAGAGGAAGGCGCCGTACGGGAGATTGGCGAAGCTCAAGC
TGCCGGGCCTAAGTACATGCCTAGTACAGAGCCCAACGATCCCATTGTCC
AAGCCTTACAAAAAGTACTGGGTGTAGGGGAAGTAGAGAAGTGGGAGCTG
CTCGACTCACGATGGAACGGGAACGAGGTCTTCAAGTACACCACGGACAA
GGGCCTTTTCTTCATAAAGCTCAACCGCGTTGAGGACCCTTCCGTCTTCC
TTACTGAAGCTGTAGGGCTGAGTGCTTTGGCGGCCACCAACACTTTGCCC
TGCCCCAAGCCTCTGCACCTGGGCAAGCTCCCCAAAGTCGGGGACATCGG
CCCAGGGGCGTTCATGGTCTTGGAGCATTTAAAATTAAAGCCCTTCGGGA
TCATGCGAGGTGACATGCAACAGCAGCTGGGGAAAAAACTCGCTGCATTG
CACCTGGATCAGACGCATGCGGCGCTGCACAAGGGGAGGTTTGGTTTTTC
GGTGTCGAATTACCTGGCCTTGACCCCGTTGAACAACACGTGGACGGACT
CCTGGCCGGCCTTCCTCGCCCAACGGCTTGAGTCACAAGTGACGGCATTG
TACCAAGAAAAGCAGTATGGCCGAGCAGCGCTCAACGGCACTGATTTGGA
ATTGCGGGAACTGGGCTCGAGGGTGATTCAGGTGGTGCCTTCTTTGTTGT
TGGGGGTGGAGGTGAAACCCTCTCTTATTCATGGGGATTTGTGGATTGGT
AATGCAGGGGCAACAGATGAGGGGCCCGTTATTTTTGACCCGGCATGTTT
CTTCGGTCATCACGAGATGGAGCTGGCGATGATGACCTTGTTTGGTGGGT
TTCGGGATGATTTCTGGACGGCTTACCACGAGGTGTTGCCGAAGGCAAAG
GGGTTTGAGATGAGGCAGAAGCTGTACCAGTTTTATTATTACCTGAATCA
GTTGAATTTGTTTGGGGATGCCGGGGTGAAGAAGACGTGTGTGAGGCTAG
CGGAGGAGTTGCTGTTGATTTAG
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Synonyms
Publications