jgi.p|Nanoce1779_2|522264, mRNA_1705 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|522264
Unique Name	mRNA_1705
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1422
Alignment location	scaffold_1:1285990..1287588 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	522350
Track	FilteredModels2
ProteinId	522264

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_1	supercontig	scaffold_1:1285990..1287588 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|522264	gene_1705	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|522264	mRNA_1705-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_1705	CDS_1705	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_1:1285990..1287588-
coding sequence from alignment at scaffold_1:1285990..1287588-

mRNA sequence

>mRNA_1705 ID=mRNA_1705|Name=jgi.p|Nanoce1779_2|522264|organism=Nannochloropsis oceanica|type=mRNA|length=1422bp
ATGAACACAGCTTCCTCCTCCCGCCGGACCTCCACGTCCGGCACCAAGGA
CAAGGACAGCATGGACGTCGCTGGCCCGGCCACACCCGCGGTGAACGACC
AGGAATTCAGCCCGGAGTTGCTTCGCTTCTTCTACACACGCTTGTTCCCG
TATCAAGCCATGTTCAAATGGCTGTCGTATGGCAATGACCCTGATAGTGA
GGGTGGGCATGTAGTCCGGGACTTCTTCTCTCGCCGGGAGTTTTCCTTTA
CCATCAACGATGACATCTACATCCGTTACCAATCCTTCCGGGATGCCGCG
GAAATGGAGGCGGCAATCCAGAAGAAGCAGCCGCACAAGATCGATATTGG
GGCCGTGTTTACGATGCCCCCGAAGGACCATCACACTGTCAAGACCGAGG
CCTTCAAGCCGGTGGAACGAGAGCTCATCTTCGATATCGACATGACCGAC
TACGACGACATCCGTACCTGCTGTACCGGTGCCAAGATATGTCCCAAATG
CTGGATTTTTATGACCATGGCCGTCAAAGTTGTCGATACGGCCCTCCGTG
AGGACTTTGGATTTCAGCAGTTGCTGTGGGTGTACTCGGGTCGGCGTGGC
GTGCATTGCTGGGTGTGTGACGAGGACGTCCGTGGGCTTACGAACGACGG
GCGGAGTGCGGTGGTGGAGTATCTGAGTTTGCCGAGGGGGAATGAGAACA
ACAGTGGGAAGGGTAAGAATGCTGGGTTGACTTGGCCGTTGCACCCGTCT
TTTGCTCGGGCTTTTGATATCCTGGAGCCAATGTTCGAGGTGGGGGTGTT
AGGGGAGGAAGGGCAAGGGGTATTGGACTCGGAAAACTCCTGGGACACGC
TTCTAGACAGTCTGCCGGATGAGGACCTGGCACTAAAGCTGAGGAGGGAG
ATGAGACGGTTGACAACGGCAGAAGAGCGGTGGAGGGAGATAAAGACGCA
GTTGCATGCGAAGACTGGGAATAGTGGAGGTGGGGCCAGGCGACAAAGTC
GAGGAGGATCGCTTGGGGGGATGTATGCACTTGAGTTGTGGAAGTATGAG
GTTGTGTTCAAGTATTGCTACCCGAGGCTGGACGTGAATGTATCTAAGGG
GATTAATCACTTGCTGAAGAGTCCGTTTGCGGTGCACCCCAAGACAGGGA
GGGTGTGCGTACCCATTGACCCGGTGGCAATTGATGACTTTGACCCATTT
AAGGTCCCCACTCTGAAAGCTTTGGCGGCTCAGATTGATGCCTATGATGC
CGAGCATGCCCAGGACGAAGTCGCAAGGGGTGTGTCTGATTATAAGAAGA
CTGAGTTGAAGGGGGCGGTGGAATTGCTGGAGAAGTGTGTGGTGGAGCCC
ATGGCGTTGGTGATGAAGAAGAGGGCAAGGATGGAGAGGGAGAGGCATGC
GGCAATGATAGGGGATTTTTAG

protein sequence of jgi.p|Nanoce1779_2|522264

>mRNA_1705-protein ID=mRNA_1705-protein|Name=jgi.p|Nanoce1779_2|522264|organism=Nannochloropsis oceanica|type=polypeptide|length=474bp
MNTASSSRRTSTSGTKDKDSMDVAGPATPAVNDQEFSPELLRFFYTRLFP
YQAMFKWLSYGNDPDSEGGHVVRDFFSRREFSFTINDDIYIRYQSFRDAA
EMEAAIQKKQPHKIDIGAVFTMPPKDHHTVKTEAFKPVERELIFDIDMTD
YDDIRTCCTGAKICPKCWIFMTMAVKVVDTALREDFGFQQLLWVYSGRRG
VHCWVCDEDVRGLTNDGRSAVVEYLSLPRGNENNSGKGKNAGLTWPLHPS
FARAFDILEPMFEVGVLGEEGQGVLDSENSWDTLLDSLPDEDLALKLRRE
MRRLTTAEERWREIKTQLHAKTGNSGGGARRQSRGGSLGGMYALELWKYE
VVFKYCYPRLDVNVSKGINHLLKSPFAVHPKTGRVCVPIDPVAIDDFDPF
KVPTLKALAAQIDAYDAEHAQDEVARGVSDYKKTELKGAVELLEKCVVEP
MALVMKKRARMERERHAAMIGDF*

mRNA from alignment at scaffold_1:1285990..1287588-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_1705 ID=mRNA_1705|Name=jgi.p|Nanoce1779_2|522264|organism=Nannochloropsis oceanica|type=mRNA|length=1599bp|location=Sequence derived from alignment at scaffold_1:1285990..1287588- (Nannochloropsis oceanica)
ATGAACACAGCTTCCTCCTCCCGCCGGACCTCCACGTCCGGCACCAAGGA
CAAGGACAGCATGGACGTCGCTGGCCCGGCCACACCCGCGGTGAACGACC
AGGAATTCAGCCCGGAGTTGCTTCGCTTCTTCTACACACGCTTGTTCCCG
TATCAAGCCATGTTCAAATGGCTGTCGTATGGCAATGACCCTGATAGTGA
GGGTGGGCATGTAGTCCGGGACTTCTTCTCTCGCCGGGAGTTTTCCTTTA
CCATCAACGATGACATCTACATCCGTTACCAATCCTTCCGGGATGCCGCG
GAAATGGAGGCGGCAATCCAGAAGAAGCAGCCGCACAAGATCGATATTGG
GGCCGTGTTTACGATGCCCCCGAAGGACCATCACACTGTCAAGACCGAGG
TAGGTTGCAGGTTGGGGCATAGAGGGGGGTGGGGGAGGGAGGGGGAAAGT
ATACTGCCAGTAACACTACCGACACCCATTGCATCTACTCTATGGTGCTC
ATATTTCGTATGTACTTATTTTCTCCCTTCCTTTTCCTCCCTCTCTTTTG
CTAGGCCTTCAAGCCGGTGGAACGAGAGCTCATCTTCGATATCGACATGA
CCGACTACGACGACATCCGTACCTGCTGTACCGGTGCCAAGATATGTCCC
AAATGCTGGATTTTTATGACCATGGCCGTCAAAGTTGTCGATACGGCCCT
CCGTGAGGACTTTGGATTTCAGCAGTTGCTGTGGGTGTACTCGGGTCGGC
GTGGCGTGCATTGCTGGGTGTGTGACGAGGACGTCCGTGGGCTTACGAAC
GACGGGCGGAGTGCGGTGGTGGAGTATCTGAGTTTGCCGAGGGGGAATGA
GAACAACAGTGGGAAGGGTAAGAATGCTGGGTTGACTTGGCCGTTGCACC
CGTCTTTTGCTCGGGCTTTTGATATCCTGGAGCCAATGTTCGAGGTGGGG
GTGTTAGGGGAGGAAGGGCAAGGGGTATTGGACTCGGAAAACTCCTGGGA
CACGCTTCTAGACAGTCTGCCGGATGAGGACCTGGCACTAAAGCTGAGGA
GGGAGATGAGACGGTTGACAACGGCAGAAGAGCGGTGGAGGGAGATAAAG
ACGCAGTTGCATGCGAAGACTGGGAATAGTGGAGGTGGGGCCAGGCGACA
AAGTCGAGGAGGATCGCTTGGTGGGGGAGGGAGGGGGGGGAGGGGGGATG
TATGCACTTGAGTTGTGGAAGTATGAGGTTGTGTTCAAGTATTGCTACCC
GAGGCTGGACGTGAATGTATCTAAGGGGATTAATCACTTGCTGAAGAGTC
CGTTTGCGGTGCACCCCAAGACAGGGAGGGTGTGCGTACCCATTGACCCG
GTGGCAATTGATGACTTTGACCCATTTAAGGTCCCCACTCTGAAAGCTTT
GGCGGCTCAGATTGATGCCTATGATGCCGAGCATGCCCAGGACGAAGTCG
CAAGGGGTGTGTCTGATTATAAGAAGACTGAGTTGAAGGGGGCGGTGGAA
TTGCTGGAGAAGTGTGTGGTGGAGCCCATGGCGTTGGTGATGAAGAAGAG
GGCAAGGATGGAGAGGGAGAGGCATGCGGCAATGATAGGGGATTTTTAG

Coding sequence (CDS) from alignment at scaffold_1:1285990..1287588-

>mRNA_1705 ID=mRNA_1705|Name=jgi.p|Nanoce1779_2|522264|organism=Nannochloropsis oceanica|type=CDS|length=4266bp|location=Sequence derived from alignment at scaffold_1:1285990..1287588- (Nannochloropsis oceanica)
GGGGGATGTATGCACTTGAGTTGTGGAAGTATGAGGTTGTGTTCAAGTAT
TGCTACCCGAGGCTGGACGTGAATGTATCTAAGGGGATTAATCACTTGCT
GAAGAGTCCGTTTGCGGTGCACCCCAAGACAGGGAGGGTGTGCGTACCCA
TTGACCCGGTGGCAATTGATGACTTTGACCCATTTAAGGTCCCCACTCTG
AAAGCTTTGGCGGCTCAGATTGATGCCTATGATGCCGAGCATGCCCAGGA
CGAAGTCGCAAGGGGTGTGTCTGATTATAAGAAGACTGAGTTGAAGGGGG
CGGTGGAATTGCTGGAGAAGTGTGTGGTGGAGCCCATGGCGTTGGTGATG
AAGAAGAGGGCAAGGATGGAGAGGGAGAGGCATGCGGCAATGATAGGGGA
TTTTTAGGCCTTCAAGCCGGTGGAACGAGAGCTCATCTTCGATATCGACA
TGACCGACTACGACGACATCCGTACCTGCTGTACCGGTGCCAAGATATGT
CCCAAATGCTGGATTTTTATGACCATGGCCGTCAAAGTTGTCGATACGGC
CCTCCGTGAGGACTTTGGATTTCAGCAGTTGCTGTGGGTGTACTCGGGTC
GGCGTGGCGTGCATTGCTGGGTGTGTGACGAGGACGTCCGTGGGCTTACG
AACGACGGGCGGAGTGCGGTGGTGGAGTATCTGAGTTTGCCGAGGGGGAA
TGAGAACAACAGTGGGAAGGGTAAGAATGCTGGGTTGACTTGGCCGTTGC
ACCCGTCTTTTGCTCGGGCTTTTGATATCCTGGAGCCAATGTTCGAGGTG
GGGGTGTTAGGGGAGGAAGGGCAAGGGGTATTGGACTCGGAAAACTCCTG
GGACACGCTTCTAGACAGTCTGCCGGATGAGGACCTGGCACTAAAGCTGA
GGAGGGAGATGAGACGGTTGACAACGGCAGAAGAGCGGTGGAGGGAGATA
AAGACGCAGTTGCATGCGAAGACTGGGAATAGTGGAGGTGGGGCCAGGCG
ACAAAGTCGAGGAGGATCGCTTGATGAACACAGCTTCCTCCTCCCGCCGG
ACCTCCACGTCCGGCACCAAGGACAAGGACAGCATGGACGTCGCTGGCCC
GGCCACACCCGCGGTGAACGACCAGGAATTCAGCCCGGAGTTGCTTCGCT
TCTTCTACACACGCTTGTTCCCGTATCAAGCCATGTTCAAATGGCTGTCG
TATGGCAATGACCCTGATAGTGAGGGTGGGCATGTAGTCCGGGACTTCTT
CTCTCGCCGGGAGTTTTCCTTTACCATCAACGATGACATCTACATCCGTT
ACCAATCCTTCCGGGATGCCGCGGAAATGGAGGCGGCAATCCAGAAGAAG
CAGCCGCACAAGATCGATATTGGGGCCGTGTTTACGATGCCCCCGAAGGA
CCATCACACTGTCAAGACCGAGGGGGGATGTATGCACTTGAGTTGTGGAA
GTATGAGGTTGTGTTCAAGTATTGCTACCCGAGGCTGGACGTGAATGTAT
CTAAGGGGATTAATCACTTGCTGAAGAGTCCGTTTGCGGTGCACCCCAAG
ACAGGGAGGGTGTGCGTACCCATTGACCCGGTGGCAATTGATGACTTTGA
CCCATTTAAGGTCCCCACTCTGAAAGCTTTGGCGGCTCAGATTGATGCCT
ATGATGCCGAGCATGCCCAGGACGAAGTCGCAAGGGGTGTGTCTGATTAT
AAGAAGACTGAGTTGAAGGGGGCGGTGGAATTGCTGGAGAAGTGTGTGGT
GGAGCCCATGGCGTTGGTGATGAAGAAGAGGGCAAGGATGGAGAGGGAGA
GGCATGCGGCAATGATAGGGGATTTTTAGGCCTTCAAGCCGGTGGAACGA
GAGCTCATCTTCGATATCGACATGACCGACTACGACGACATCCGTACCTG
CTGTACCGGTGCCAAGATATGTCCCAAATGCTGGATTTTTATGACCATGG
CCGTCAAAGTTGTCGATACGGCCCTCCGTGAGGACTTTGGATTTCAGCAG
TTGCTGTGGGTGTACTCGGGTCGGCGTGGCGTGCATTGCTGGGTGTGTGA
CGAGGACGTCCGTGGGCTTACGAACGACGGGCGGAGTGCGGTGGTGGAGT
ATCTGAGTTTGCCGAGGGGGAATGAGAACAACAGTGGGAAGGGTAAGAAT
GCTGGGTTGACTTGGCCGTTGCACCCGTCTTTTGCTCGGGCTTTTGATAT
CCTGGAGCCAATGTTCGAGGTGGGGGTGTTAGGGGAGGAAGGGCAAGGGG
TATTGGACTCGGAAAACTCCTGGGACACGCTTCTAGACAGTCTGCCGGAT
GAGGACCTGGCACTAAAGCTGAGGAGGGAGATGAGACGGTTGACAACGGC
AGAAGAGCGGTGGAGGGAGATAAAGACGCAGTTGCATGCGAAGACTGGGA
ATAGTGGAGGTGGGGCCAGGCGACAAAGTCGAGGAGGATCGCTTGATGAA
CACAGCTTCCTCCTCCCGCCGGACCTCCACGTCCGGCACCAAGGACAAGG
ACAGCATGGACGTCGCTGGCCCGGCCACACCCGCGGTGAACGACCAGGAA
TTCAGCCCGGAGTTGCTTCGCTTCTTCTACACACGCTTGTTCCCGTATCA
AGCCATGTTCAAATGGCTGTCGTATGGCAATGACCCTGATAGTGAGGGTG
GGCATGTAGTCCGGGACTTCTTCTCTCGCCGGGAGTTTTCCTTTACCATC
AACGATGACATCTACATCCGTTACCAATCCTTCCGGGATGCCGCGGAAAT
GGAGGCGGCAATCCAGAAGAAGCAGCCGCACAAGATCGATATTGGGGCCG
TGTTTACGATGCCCCCGAAGGACCATCACACTGTCAAGACCGAGGGGGGA
TGTATGCACTTGAGTTGTGGAAGTATGAGGTTGTGTTCAAGTATTGCTAC
CCGAGGCTGGACGTGAATGTATCTAAGGGGATTAATCACTTGCTGAAGAG
TCCGTTTGCGGTGCACCCCAAGACAGGGAGGGTGTGCGTACCCATTGACC
CGGTGGCAATTGATGACTTTGACCCATTTAAGGTCCCCACTCTGAAAGCT
TTGGCGGCTCAGATTGATGCCTATGATGCCGAGCATGCCCAGGACGAAGT
CGCAAGGGGTGTGTCTGATTATAAGAAGACTGAGTTGAAGGGGGCGGTGG
AATTGCTGGAGAAGTGTGTGGTGGAGCCCATGGCGTTGGTGATGAAGAAG
AGGGCAAGGATGGAGAGGGAGAGGCATGCGGCAATGATAGGGGATTTTTA
GGCCTTCAAGCCGGTGGAACGAGAGCTCATCTTCGATATCGACATGACCG
ACTACGACGACATCCGTACCTGCTGTACCGGTGCCAAGATATGTCCCAAA
TGCTGGATTTTTATGACCATGGCCGTCAAAGTTGTCGATACGGCCCTCCG
TGAGGACTTTGGATTTCAGCAGTTGCTGTGGGTGTACTCGGGTCGGCGTG
GCGTGCATTGCTGGGTGTGTGACGAGGACGTCCGTGGGCTTACGAACGAC
GGGCGGAGTGCGGTGGTGGAGTATCTGAGTTTGCCGAGGGGGAATGAGAA
CAACAGTGGGAAGGGTAAGAATGCTGGGTTGACTTGGCCGTTGCACCCGT
CTTTTGCTCGGGCTTTTGATATCCTGGAGCCAATGTTCGAGGTGGGGGTG
TTAGGGGAGGAAGGGCAAGGGGTATTGGACTCGGAAAACTCCTGGGACAC
GCTTCTAGACAGTCTGCCGGATGAGGACCTGGCACTAAAGCTGAGGAGGG
AGATGAGACGGTTGACAACGGCAGAAGAGCGGTGGAGGGAGATAAAGACG
CAGTTGCATGCGAAGACTGGGAATAGTGGAGGTGGGGCCAGGCGACAAAG
TCGAGGAGGATCGCTTGATGAACACAGCTTCCTCCTCCCGCCGGACCTCC
ACGTCCGGCACCAAGGACAAGGACAGCATGGACGTCGCTGGCCCGGCCAC
ACCCGCGGTGAACGACCAGGAATTCAGCCCGGAGTTGCTTCGCTTCTTCT
ACACACGCTTGTTCCCGTATCAAGCCATGTTCAAATGGCTGTCGTATGGC
AATGACCCTGATAGTGAGGGTGGGCATGTAGTCCGGGACTTCTTCTCTCG
CCGGGAGTTTTCCTTTACCATCAACGATGACATCTACATCCGTTACCAAT
CCTTCCGGGATGCCGCGGAAATGGAGGCGGCAATCCAGAAGAAGCAGCCG
CACAAGATCGATATTGGGGCCGTGTTTACGATGCCCCCGAAGGACCATCA
CACTGTCAAGACCGAG

Synonyms

Publications