jgi.p|Nanoce1779_2|562441, mRNA_1704 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|562441
Unique NamemRNA_1704
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length720
Alignment locationscaffold_1:1285014..1285733 +

Link to JBrowse

Properties
Property NameValue
TranscriptId562527
TrackFilteredModels2
ProteinId562441
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_1supercontigscaffold_1:1285014..1285733 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|562441gene_1704Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|562441mRNA_1704-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1704CDS_1704Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1704 ID=mRNA_1704|Name=jgi.p|Nanoce1779_2|562441|organism=Nannochloropsis oceanica|type=mRNA|length=720bp
ATGGTGAGGCACGCCATCCGTCGGGAGAAAAACCCCGTGCCCCGCCCCAG
CGGCATTGGCAAAGCCCCACTAAAGATGGGAATGACTGGGGTTGCCGCTA
CAATAGGTTCTCTTGATGCTTATGTTGTGCCGATGACGCGATATGTCGCC
CCGCCTCCGCTGCCGCCGGAGCCCCAAAAGCCCAAGCCTAAGGCATCAGT
CGCAGCCGCAAGCAAACCAACGTACCGCAGCACCAACACCGCTAAAGCCT
TGCCGCGTTCCTCCGGGTCGCAAAAGTCGAAGCCAGCAGCAGTTGCAGCC
GCAGTAATCACCGAGGCTCCCACACCCTCGGCTCCCATCTCTGCTACCGA
AGCCTTGTCCACAGACTGGCTCGTGGAACGACTACACGGTGGGCATGGTC
GAGTGGATGCTCAGGCATCGTGGGATGCACGTCGCACAGAAAAACTGACA
GTGACGGACGTGGCGTTGTTCAACAAGCGGCGCATTCTGGGACAGCAGGC
CAAAGCGCGTCAGCCCGGGTGGCGTGTACAGGGGGATAAGCGAGTGTTTG
TGGCGTATACGGGGGCGGGCATGCAGGTGGCGGAGGGGGCAGAGGCATTT
AAATTGAGTGTGGCCTTTGGGAAGAAAAAGACGAAACGAGTGGGTGCTGG
AGGTGGAGAAGCGGGGAAGACATGTGTGAGCAAGGGGAAGAAGAAGGGTA
AAAGCGACATGTACAGCTAG
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protein sequence of jgi.p|Nanoce1779_2|562441

>mRNA_1704-protein ID=mRNA_1704-protein|Name=jgi.p|Nanoce1779_2|562441|organism=Nannochloropsis oceanica|type=polypeptide|length=240bp
MVRHAIRREKNPVPRPSGIGKAPLKMGMTGVAATIGSLDAYVVPMTRYVA
PPPLPPEPQKPKPKASVAAASKPTYRSTNTAKALPRSSGSQKSKPAAVAA
AVITEAPTPSAPISATEALSTDWLVERLHGGHGRVDAQASWDARRTEKLT
VTDVALFNKRRILGQQAKARQPGWRVQGDKRVFVAYTGAGMQVAEGAEAF
KLSVAFGKKKTKRVGAGGGEAGKTCVSKGKKKGKSDMYS*
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mRNA from alignment at scaffold_1:1285014..1285733+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1704 ID=mRNA_1704|Name=jgi.p|Nanoce1779_2|562441|organism=Nannochloropsis oceanica|type=mRNA|length=720bp|location=Sequence derived from alignment at scaffold_1:1285014..1285733+ (Nannochloropsis oceanica)
ATGGTGAGGCACGCCATCCGTCGGGAGAAAAACCCCGTGCCCCGCCCCAG
CGGCATTGGCAAAGCCCCACTAAAGATGGGAATGACTGGGGTTGCCGCTA
CAATAGGTTCTCTTGATGCTTATGTTGTGCCGATGACGCGATATGTCGCC
CCGCCTCCGCTGCCGCCGGAGCCCCAAAAGCCCAAGCCTAAGGCATCAGT
CGCAGCCGCAAGCAAACCAACGTACCGCAGCACCAACACCGCTAAAGCCT
TGCCGCGTTCCTCCGGGTCGCAAAAGTCGAAGCCAGCAGCAGTTGCAGCC
GCAGTAATCACCGAGGCTCCCACACCCTCGGCTCCCATCTCTGCTACCGA
AGCCTTGTCCACAGACTGGCTCGTGGAACGACTACACGGTGGGCATGGTC
GAGTGGATGCTCAGGCATCGTGGGATGCACGTCGCACAGAAAAACTGACA
GTGACGGACGTGGCGTTGTTCAACAAGCGGCGCATTCTGGGACAGCAGGC
CAAAGCGCGTCAGCCCGGGTGGCGTGTACAGGGGGATAAGCGAGTGTTTG
TGGCGTATACGGGGGCGGGCATGCAGGTGGCGGAGGGGGCAGAGGCATTT
AAATTGAGTGTGGCCTTTGGGAAGAAAAAGACGAAACGAGTGGGTGCTGG
AGGTGGAGAAGCGGGGAAGACATGTGTGAGCAAGGGGAAGAAGAAGGGTA
AAAGCGACATGTACAGCTAG
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Coding sequence (CDS) from alignment at scaffold_1:1285014..1285733+

>mRNA_1704 ID=mRNA_1704|Name=jgi.p|Nanoce1779_2|562441|organism=Nannochloropsis oceanica|type=CDS|length=720bp|location=Sequence derived from alignment at scaffold_1:1285014..1285733+ (Nannochloropsis oceanica)
ATGGTGAGGCACGCCATCCGTCGGGAGAAAAACCCCGTGCCCCGCCCCAG
CGGCATTGGCAAAGCCCCACTAAAGATGGGAATGACTGGGGTTGCCGCTA
CAATAGGTTCTCTTGATGCTTATGTTGTGCCGATGACGCGATATGTCGCC
CCGCCTCCGCTGCCGCCGGAGCCCCAAAAGCCCAAGCCTAAGGCATCAGT
CGCAGCCGCAAGCAAACCAACGTACCGCAGCACCAACACCGCTAAAGCCT
TGCCGCGTTCCTCCGGGTCGCAAAAGTCGAAGCCAGCAGCAGTTGCAGCC
GCAGTAATCACCGAGGCTCCCACACCCTCGGCTCCCATCTCTGCTACCGA
AGCCTTGTCCACAGACTGGCTCGTGGAACGACTACACGGTGGGCATGGTC
GAGTGGATGCTCAGGCATCGTGGGATGCACGTCGCACAGAAAAACTGACA
GTGACGGACGTGGCGTTGTTCAACAAGCGGCGCATTCTGGGACAGCAGGC
CAAAGCGCGTCAGCCCGGGTGGCGTGTACAGGGGGATAAGCGAGTGTTTG
TGGCGTATACGGGGGCGGGCATGCAGGTGGCGGAGGGGGCAGAGGCATTT
AAATTGAGTGTGGCCTTTGGGAAGAAAAAGACGAAACGAGTGGGTGCTGG
AGGTGGAGAAGCGGGGAAGACATGTGTGAGCAAGGGGAAGAAGAAGGGTA
AAAGCGACATGTACAGCTAG
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Synonyms
Publications