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Properties
| Property Name | Value |
|---|
| TranscriptId | 573230 |
| Track | FilteredModels2 |
| ProteinId | 573144 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_1 | supercontig | scaffold_1:1282395..1284558 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_1703 ID=mRNA_1703|Name=jgi.p|Nanoce1779_2|573144|organism=Nannochloropsis oceanica|type=mRNA|length=1848bp
CAGAATTAGGTCGGTTGATTGCTTGACCTCCCCCCTCCTCCCTATTCCAA
CAAGAATGCAAGCTCGTCGTGCATTCCTCCTGGCCGCCACGCAGCTTCTT
GCCACCACCACGCTTGCATTCCGTCCGGCACTCTTCGCACCTGTTGCCTT
GCACCACCGCAGTAGTGTCAGCAGCATCAGGACGAGCACCACCATCAGCA
TGGCTACGACTACTCTCTCTTCCAAGGAGCCCGCCAAATTTAGCACTAAG
GACTACAGGCGGCCCCTGCATTGGGTCTTCAAAGTCGGCGACCTCAAGAA
AACCCTCGCCTTCTACGAACAAGGTTTCGGGATGCACGTCCACAGACACG
AAGAATTCGCTTCAGGCTGCGAAGCGACTTGCAATGGCCCGTATGGTGGA
TGTTGGAGTAAGACCATGGTAGGATGGGGGAAGGAGGATGAGCAGTTTGC
CCTTGAATTGACCTTCAATTATGGGATTGATTCATATAAGTTTGGAAACG
ACTTGCGGCATATCGCCGTGGACAGCAAGGCATGGAAAGGCCCGGAGAAG
GAGGTAGTGGTGGAGAAGGGAGAGGGCGGGGTAAAGCGACGGTTTGCCGT
CAGTCCGGATGGGTATAGATATTTGTTGGTTGATACGGGGTGTGAGGAGG
TGCCGAGCGAGCCTTTCCTGTTTGTGTCGGTGCACGTGGCCGATGTCGAG
AAGAGCAAGAAGTACTATGTGGATGTATTGGATGCGAATATCCGCGCCTC
GGGCCCAGGGGCGGAGGAAGGGAACGAGAACGTAATGGTAGGTTTTGACA
GAGCGGGGACAGGGGTGTGTTTGGAACTGGTTCAGCTACCCGGAGGTGGA
AAGGTGGATCACGCCCTGGCCTCGGGGAGGTTTGCGACTGAGACGGAGGA
CGGAGCACCGGAAAAGGTGGGGGACAAAGTCAAAAAGGCAGGCGGGGATA
TCTTGCATGGCCCCCTCAAGCTGCAGCCCCACGGGGAGGAGGTGGTGATT
GTCGCCGATCCAGACGGCTACGAATTCTGCTTTGTCGACGCCAGGGGGTA
TACCAATTGTATCAATGTCCGGGAGGACGCAGAGGGTACGACAGTGGACT
GGCCCTACCGAGAGAAGCTGGAGAAGGCGGCGCGCAGTGGGAAAAATGCC
AAGCTTGAGGTGGCTAAGGTCGTCGCGGGGGACTATGACGTCAAGTCGAT
TAAGGGGAAGATGGAGGGTTTCTTGAAGGCGCATCCGGTGGTGGTGTTCG
CACAGGCGACCTGCCCGTTCTGTTCCAAGGCCAAGGCGTTGCTGAAGGAG
GTGGGGGCAAAATTTGAGGTGGTGGAGGTGGATGCGATGGAGGGAAAGGA
GGGGTCTGCGATGAGGGTGGAGCTGGACAAGGTCACAGGGAGGAGTACGG
TACGTTTTGAGGCGGGAGGGTGGAGGGAAGGGTAAAGACGGTGGCAGTCG
GTTTGGAAATGCTTGGGCCTCGTTTTAAATCAAGTTCACTTAATGCTTCA
AACTTCAACTTCAAATTACCTTCTCTAAACATCATATTTTCCTATTTTCC
TCTTCGCTCAGGTGCCCAACATTTTCATCGGGGGCAAGCCCGTGGGTGGT
TTTACGGATGGGATCGAAAAGTTGCACCAGGAAGGAAAATTGGTGCCATT
GTTGAAGGAAGCTGGGGCAGTGTAATGGAAGAATTGTGGGAAGAAGGCTG
CTTGAAAATCATTCATGAACGTGGTTCGATACTTAAATGGGATGGGACGA
AGGGGTGAGACGAAGGGAAGATCAAGTCTGTGTCGGGACATAGGAGAATT
ACGTCGAGGAGTAAGAAGAAATAATAAACATTACGTGGACCGTGTAAA back to topprotein sequence of jgi.p|Nanoce1779_2|573144 >mRNA_1703-protein ID=mRNA_1703-protein|Name=jgi.p|Nanoce1779_2|573144|organism=Nannochloropsis oceanica|type=polypeptide|length=460bp
MQARRAFLLAATQLLATTTLAFRPALFAPVALHHRSSVSSIRTSTTISMA
TTTLSSKEPAKFSTKDYRRPLHWVFKVGDLKKTLAFYEQGFGMHVHRHEE
FASGCEATCNGPYGGCWSKTMVGWGKEDEQFALELTFNYGIDSYKFGNDL
RHIAVDSKAWKGPEKEVVVEKGEGGVKRRFAVSPDGYRYLLVDTGCEEVP
SEPFLFVSVHVADVEKSKKYYVDVLDANIRASGPGAEEGNENVMVGFDRA
GTGVCLELVQLPGGGKVDHALASGRFATETEDGAPEKVGDKVKKAGGDIL
HGPLKLQPHGEEVVIVADPDGYEFCFVDARGYTNCINVREDAEGTTVDWP
YREKLEKAARSGKNAKLEVAKVVAGDYDVKSIKGKMEGFLKAHPVVVFAQ
ATCPFCSKAKALLKEVGAKFEVVEVDAMEGKEGSAMRVELDKVTGRSTVR
FEAGGWREG* back to topmRNA from alignment at scaffold_1:1282395..1284558+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_1703 ID=mRNA_1703|Name=jgi.p|Nanoce1779_2|573144|organism=Nannochloropsis oceanica|type=mRNA|length=2164bp|location=Sequence derived from alignment at scaffold_1:1282395..1284558+ (Nannochloropsis oceanica)
CAGAATTAGGTCGGTTGATTGCTTGACCTCCCCCCTCCTCCCTATTCCAA
CAAGAATGCAAGCTCGTCGTGCATTCCTCCTGGCCGCCACGCAGCTTCTT
GCCACCACCACGCTTGCATTCCGTCCGGCACTCTTCGCACCTGTTGCCTT
GCACCACCGCAGTAGTGTCAGCAGCATCAGGTACATAGGAGTTGGGAAAG
ATGCATGATACATTGCCCACACAATTAAGCTTCTGGAACCCGATATTAAG
CTACAAAGTCCGTCTCAAACGCAACAGGACGAGCACCACCATCAGCATGG
CTACGACTACTCTCTCTTCCAAGGAGCCCGCCAAATTTAGCACTAAGGAC
TACAGGGTATGTACTCAAGGTGTGCTCGGCCAAGCCTCCCTTCCCCCCCT
CCTTTCCTGTCCTTCCGTCTCTTTCAGCAATGTGCACGGCACCCGACACT
CTGATGTCAGGCATTGCCAATGCTTTGGAACACATGACAGTGGTTGGGAC
TGCATTGCAATATGTAATGATTGACATTACTCATGCCATCTTTCCCTCCC
TTTCTCCTCCCTCATCGCCAAATAGCGGCCCCTGCATTGGGTCTTCAAAG
TCGGCGACCTCAAGAAAACCCTCGCCTTCTACGAACAAGGTTTCGGGATG
CACGTCCACAGACACGAAGAATTCGCTTCAGGCTGCGAAGCGACTTGCAA
TGGCCCGTATGGTGGATGTTGGAGTAAGACCATGGTAGGATGGGGGAAGG
AGGATGAGCAGTTTGCCCTTGAATTGACCTTCAATTATGGGATTGATTCA
TATAAGTTTGGAAACGACTTGCGGCATATCGCCGTGGACAGCAAGGCATG
GAAAGGCCCGGAGAAGGAGGTAGTGGTGGAGAAGGGAGAGGGCGGGGTAA
AGCGACGGTTTGCCGTCAGTCCGGATGGGTATAGATATTTGTTGGTTGAT
ACGGGGTGTGAGGAGGTGCCGAGCGAGCCTTTCCTGTTTGTGTCGGTGCA
CGTGGCCGATGTCGAGAAGAGCAAGAAGTACTATGTGGATGTATTGGATG
CGAATATCCGCGCCTCGGGCCCAGGGGCGGAGGAAGGGAACGAGAACGTA
ATGGTAGGTTTTGACAGAGCGGGGACAGGGGTGTGTTTGGAACTGGTTCA
GCTACCCGGAGGTGGAAAGGTGGATCACGCCCTGGCCTCGGGGAGGTTTG
CGACTGAGACGGAGGACGGAGCACCGGAAAAGGTGGGGGACAAAGTCAAA
AAGGCAGGCGGGGATATCTTGCATGGCCCCCTCAAGCTGCAGCCCCACGG
GGAGGAGGTGGTGATTGTCGCCGATCCAGACGGCTACGAATTCTGCTTTG
TCGACGCCAGGGGGTATACCAATTGTATCAATGTCCGGGAGGACGCAGAG
GGTACGACAGTGGACTGGCCCTACCGAGAGAAGCTGGAGAAGGCGGCGCG
CAGTGGGAAAAATGCCAAGCTTGAGGTGGCTAAGGTCGTCGCGGGGGACT
ATGACGTCAAGTCGATTAAGGGGAAGATGGAGGGTTTCTTGAAGGCGCAT
CCGGTGGTGGTGTTCGCACAGGCGACCTGCCCGTTCTGTTCCAAGGCCAA
GGCGTTGCTGAAGGAGGTGGGGGCAAAATTTGAGGTGGTGGAGGTGGATG
CGATGGAGGGAAAGGAGGGGTCTGCGATGAGGGTGGAGCTGGACAAGGTC
ACAGGGAGGAGTACGGTACGTTTTGAGGCGGGAGGGTGGAGGGAAGGGTA
AAGACGGTGGCAGTCGGTTTGGAAATGCTTGGGCCTCGTTTTAAATCAAG
TTCACTTAATGCTTCAAACTTCAACTTCAAATTACCTTCTCTAAACATCA
TATTTTCCTATTTTCCTCTTCGCTCAGGTGCCCAACATTTTCATCGGGGG
CAAGCCCGTGGGTGGTTTTACGGATGGGATCGAAAAGTTGCACCAGGAAG
GAAAATTGGTGCCATTGTTGAAGGAAGCTGGGGCAGTGTAATGGAAGAAT
TGTGGGAAGAAGGCTGCTTGAAAATCATTCATGAACGTGGTTCGATACTT
AAATGGGATGGGACGAAGGGGTGAGACGAAGGGAAGATCAAGTCTGTGTC
GGGACATAGGAGAATTACGTCGAGGAGTAAGAAGAAATAATAAACATTAC
GTGGACCGTGTAAA back to topCoding sequence (CDS) from alignment at scaffold_1:1282395..1284558+ >mRNA_1703 ID=mRNA_1703|Name=jgi.p|Nanoce1779_2|573144|organism=Nannochloropsis oceanica|type=CDS|length=4140bp|location=Sequence derived from alignment at scaffold_1:1282395..1284558+ (Nannochloropsis oceanica)
ATGCAAGCTCGTCGTGCATTCCTCCTGGCCGCCACGCAGCTTCTTGCCAC
CACCACGCTTGCATTCCGTCCGGCACTCTTCGCACCTGTTGCCTTGCACC
ACCGCAGTAGTGTCAGCAGCATCAGGACGAGCACCACCATCAGCATGGCT
ACGACTACTCTCTCTTCCAAGGAGCCCGCCAAATTTAGCACTAAGGACTA
CAGGCGGCCCCTGCATTGGGTCTTCAAAGTCGGCGACCTCAAGAAAACCC
TCGCCTTCTACGAACAAGGTTTCGGGATGCACGTCCACAGACACGAAGAA
TTCGCTTCAGGCTGCGAAGCGACTTGCAATGGCCCGTATGGTGGATGTTG
GAGTAAGACCATGGTAGGATGGGGGAAGGAGGATGAGCAGTTTGCCCTTG
AATTGACCTTCAATTATGGGATTGATTCATATAAGTTTGGAAACGACTTG
CGGCATATCGCCGTGGACAGCAAGGCATGGAAAGGCCCGGAGAAGGAGGT
AGTGGTGGAGAAGGGAGAGGGCGGGGTAAAGCGACGGTTTGCCGTCAGTC
CGGATGGGTATAGATATTTGTTGGTTGATACGGGGTGTGAGGAGGTGCCG
AGCGAGCCTTTCCTGTTTGTGTCGGTGCACGTGGCCGATGTCGAGAAGAG
CAAGAAGTACTATGTGGATGTATTGGATGCGAATATCCGCGCCTCGGGCC
CAGGGGCGGAGGAAGGGAACGAGAACGTAATGGTAGGTTTTGACAGAGCG
GGGACAGGGGTGTGTTTGGAACTGGTTCAGCTACCCGGAGGTGGAAAGGT
GGATCACGCCCTGGCCTCGGGGAGGTTTGCGACTGAGACGGAGGACGGAG
CACCGGAAAAGGTGGGGGACAAAGTCAAAAAGGCAGGCGGGGATATCTTG
CATGGCCCCCTCAAGCTGCAGCCCCACGGGGAGGAGGTGGTGATTGTCGC
CGATCCAGACGGCTACGAATTCTGCTTTGTCGACGCCAGGGGGTATACCA
ATTGTATCAATGTCCGGGAGGACGCAGAGGGTACGACAGTGGACTGGCCC
TACCGAGAGAAGCTGGAGAAGGCGGCGCGCAGTGGGAAAAATGCCAAGCT
TGAGGTGGCTAAGGTCGTCGCGGGGGACTATGACGTCAAGTCGATTAAGG
GGAAGATGGAGGGTTTCTTGAAGGCGCATCCGGTGGTGGTGTTCGCACAG
GCGACCTGCCCGTTCTGTTCCAAGGCCAAGGCGTTGCTGAAGGAGGTGGG
GGCAAAATTTGAGGTGGTGGAGGTGGATGCGATGGAGGGAAAGGAGGGGT
CTGCGATGAGGGTGGAGCTGGACAAGGTCACAGGGAGGAGTACGGTACGT
TTTGAGGCGGGAGGGTGGAGGGAAGGGTAAATGCAAGCTCGTCGTGCATT
CCTCCTGGCCGCCACGCAGCTTCTTGCCACCACCACGCTTGCATTCCGTC
CGGCACTCTTCGCACCTGTTGCCTTGCACCACCGCAGTAGTGTCAGCAGC
ATCAGGACGAGCACCACCATCAGCATGGCTACGACTACTCTCTCTTCCAA
GGAGCCCGCCAAATTTAGCACTAAGGACTACAGGCGGCCCCTGCATTGGG
TCTTCAAAGTCGGCGACCTCAAGAAAACCCTCGCCTTCTACGAACAAGGT
TTCGGGATGCACGTCCACAGACACGAAGAATTCGCTTCAGGCTGCGAAGC
GACTTGCAATGGCCCGTATGGTGGATGTTGGAGTAAGACCATGGTAGGAT
GGGGGAAGGAGGATGAGCAGTTTGCCCTTGAATTGACCTTCAATTATGGG
ATTGATTCATATAAGTTTGGAAACGACTTGCGGCATATCGCCGTGGACAG
CAAGGCATGGAAAGGCCCGGAGAAGGAGGTAGTGGTGGAGAAGGGAGAGG
GCGGGGTAAAGCGACGGTTTGCCGTCAGTCCGGATGGGTATAGATATTTG
TTGGTTGATACGGGGTGTGAGGAGGTGCCGAGCGAGCCTTTCCTGTTTGT
GTCGGTGCACGTGGCCGATGTCGAGAAGAGCAAGAAGTACTATGTGGATG
TATTGGATGCGAATATCCGCGCCTCGGGCCCAGGGGCGGAGGAAGGGAAC
GAGAACGTAATGGTAGGTTTTGACAGAGCGGGGACAGGGGTGTGTTTGGA
ACTGGTTCAGCTACCCGGAGGTGGAAAGGTGGATCACGCCCTGGCCTCGG
GGAGGTTTGCGACTGAGACGGAGGACGGAGCACCGGAAAAGGTGGGGGAC
AAAGTCAAAAAGGCAGGCGGGGATATCTTGCATGGCCCCCTCAAGCTGCA
GCCCCACGGGGAGGAGGTGGTGATTGTCGCCGATCCAGACGGCTACGAAT
TCTGCTTTGTCGACGCCAGGGGGTATACCAATTGTATCAATGTCCGGGAG
GACGCAGAGGGTACGACAGTGGACTGGCCCTACCGAGAGAAGCTGGAGAA
GGCGGCGCGCAGTGGGAAAAATGCCAAGCTTGAGGTGGCTAAGGTCGTCG
CGGGGGACTATGACGTCAAGTCGATTAAGGGGAAGATGGAGGGTTTCTTG
AAGGCGCATCCGGTGGTGGTGTTCGCACAGGCGACCTGCCCGTTCTGTTC
CAAGGCCAAGGCGTTGCTGAAGGAGGTGGGGGCAAAATTTGAGGTGGTGG
AGGTGGATGCGATGGAGGGAAAGGAGGGGTCTGCGATGAGGGTGGAGCTG
GACAAGGTCACAGGGAGGAGTACGGTACGTTTTGAGGCGGGAGGGTGGAG
GGAAGGGTAAATGCAAGCTCGTCGTGCATTCCTCCTGGCCGCCACGCAGC
TTCTTGCCACCACCACGCTTGCATTCCGTCCGGCACTCTTCGCACCTGTT
GCCTTGCACCACCGCAGTAGTGTCAGCAGCATCAGGACGAGCACCACCAT
CAGCATGGCTACGACTACTCTCTCTTCCAAGGAGCCCGCCAAATTTAGCA
CTAAGGACTACAGGCGGCCCCTGCATTGGGTCTTCAAAGTCGGCGACCTC
AAGAAAACCCTCGCCTTCTACGAACAAGGTTTCGGGATGCACGTCCACAG
ACACGAAGAATTCGCTTCAGGCTGCGAAGCGACTTGCAATGGCCCGTATG
GTGGATGTTGGAGTAAGACCATGGTAGGATGGGGGAAGGAGGATGAGCAG
TTTGCCCTTGAATTGACCTTCAATTATGGGATTGATTCATATAAGTTTGG
AAACGACTTGCGGCATATCGCCGTGGACAGCAAGGCATGGAAAGGCCCGG
AGAAGGAGGTAGTGGTGGAGAAGGGAGAGGGCGGGGTAAAGCGACGGTTT
GCCGTCAGTCCGGATGGGTATAGATATTTGTTGGTTGATACGGGGTGTGA
GGAGGTGCCGAGCGAGCCTTTCCTGTTTGTGTCGGTGCACGTGGCCGATG
TCGAGAAGAGCAAGAAGTACTATGTGGATGTATTGGATGCGAATATCCGC
GCCTCGGGCCCAGGGGCGGAGGAAGGGAACGAGAACGTAATGGTAGGTTT
TGACAGAGCGGGGACAGGGGTGTGTTTGGAACTGGTTCAGCTACCCGGAG
GTGGAAAGGTGGATCACGCCCTGGCCTCGGGGAGGTTTGCGACTGAGACG
GAGGACGGAGCACCGGAAAAGGTGGGGGACAAAGTCAAAAAGGCAGGCGG
GGATATCTTGCATGGCCCCCTCAAGCTGCAGCCCCACGGGGAGGAGGTGG
TGATTGTCGCCGATCCAGACGGCTACGAATTCTGCTTTGTCGACGCCAGG
GGGTATACCAATTGTATCAATGTCCGGGAGGACGCAGAGGGTACGACAGT
GGACTGGCCCTACCGAGAGAAGCTGGAGAAGGCGGCGCGCAGTGGGAAAA
ATGCCAAGCTTGAGGTGGCTAAGGTCGTCGCGGGGGACTATGACGTCAAG
TCGATTAAGGGGAAGATGGAGGGTTTCTTGAAGGCGCATCCGGTGGTGGT
GTTCGCACAGGCGACCTGCCCGTTCTGTTCCAAGGCCAAGGCGTTGCTGA
AGGAGGTGGGGGCAAAATTTGAGGTGGTGGAGGTGGATGCGATGGAGGGA
AAGGAGGGGTCTGCGATGAGGGTGGAGCTGGACAAGGTCACAGGGAGGAG
TACGGTACGTTTTGAGGCGGGAGGGTGGAGGGAAGGGTAA back to top
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