jgi.p|Nanoce1779_2|15168, mRNA_1701 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|15168
Unique NamemRNA_1701
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length692
Alignment locationscaffold_1:1275673..1276364 +

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Properties
Property NameValue
TranscriptId15254
TrackFilteredModels2
ProteinId15168
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_1supercontigscaffold_1:1275673..1276364 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|15168gene_1701Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|15168mRNA_1701-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1701CDS_1701Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1701 ID=mRNA_1701|Name=jgi.p|Nanoce1779_2|15168|organism=Nannochloropsis oceanica|type=mRNA|length=692bp
TTTCTGTCTATCCTTTCTTTGTTTTTTCTTTCTTTCAATTTTTTCCTCGA
TCATATGAATGTTGACAGTATTAACATTTTGTCACTCCCGGGAGCGATTT
TGGCTCGCTTACTTGCTGCGGTTGCTAGGTTTATACCTGATGTTTCTCGT
GCTTGGCGTCGCACAGCACGTCCGAATACACGTTCTAATGTCCTTAGCTT
TTTGCCTAACTTTCCAATATACCTTGGTGTCGTCCTTATGATGACGAAGT
CGAACACTATTGCCTACTCTGTTTCTACATCCATCTCTCTTTTCTCCTCC
GAAATACCCACTCCATCGTCTCTTTTCCCTCTGTCTATGACACCTCTCTT
GCTTCTTGTGTATGCGTGTATGCGCGCGCGCGTATGTACACACATGTATT
GGGACACCTTCACCGCCTATGAATGTAAAACATAAACCCTCCCTCTCTCC
CTTTCTATCCCTCCCCCCTCCCTCTCCTTATAGCAAAGTGCGAGCATTTG
TCGTACCATTCGACTGCTGCTGCTGTTGGTTCCTATGCTGCTCGCGGCCA
CGGTGCTTCCCTACCTTCCTCCCCCCTCCTTCTCCCTTTCCCCCTTCTCC
TTCTCCTCCTTTATCTCTCCTCCCACGGTGATATGGCCCATATCTGTGTC
CCCGCTTCCCGTCACATCTTCTCTCTCTCTGCCCTCCATCCC
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protein sequence of jgi.p|Nanoce1779_2|15168

>mRNA_1701-protein ID=mRNA_1701-protein|Name=jgi.p|Nanoce1779_2|15168|organism=Nannochloropsis oceanica|type=polypeptide|length=127bp
MNVDSINILSLPGAILARLLAAVARFIPDVSRAWRRTARPNTRSNVLSFL
PNFPIYLGVVLMMTKSNTIAYSVSTSISLFSSEIPTPSSLFPLSMTPLLL
LVYACMRARVCTHMYWDTFTAYECKT*
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mRNA from alignment at scaffold_1:1275673..1276364+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1701 ID=mRNA_1701|Name=jgi.p|Nanoce1779_2|15168|organism=Nannochloropsis oceanica|type=mRNA|length=692bp|location=Sequence derived from alignment at scaffold_1:1275673..1276364+ (Nannochloropsis oceanica)
TTTCTGTCTATCCTTTCTTTGTTTTTTCTTTCTTTCAATTTTTTCCTCGA
TCATATGAATGTTGACAGTATTAACATTTTGTCACTCCCGGGAGCGATTT
TGGCTCGCTTACTTGCTGCGGTTGCTAGGTTTATACCTGATGTTTCTCGT
GCTTGGCGTCGCACAGCACGTCCGAATACACGTTCTAATGTCCTTAGCTT
TTTGCCTAACTTTCCAATATACCTTGGTGTCGTCCTTATGATGACGAAGT
CGAACACTATTGCCTACTCTGTTTCTACATCCATCTCTCTTTTCTCCTCC
GAAATACCCACTCCATCGTCTCTTTTCCCTCTGTCTATGACACCTCTCTT
GCTTCTTGTGTATGCGTGTATGCGCGCGCGCGTATGTACACACATGTATT
GGGACACCTTCACCGCCTATGAATGTAAAACATAAACCCTCCCTCTCTCC
CTTTCTATCCCTCCCCCCTCCCTCTCCTTATAGCAAAGTGCGAGCATTTG
TCGTACCATTCGACTGCTGCTGCTGTTGGTTCCTATGCTGCTCGCGGCCA
CGGTGCTTCCCTACCTTCCTCCCCCCTCCTTCTCCCTTTCCCCCTTCTCC
TTCTCCTCCTTTATCTCTCCTCCCACGGTGATATGGCCCATATCTGTGTC
CCCGCTTCCCGTCACATCTTCTCTCTCTCTGCCCTCCATCCC
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Coding sequence (CDS) from alignment at scaffold_1:1275673..1276364+

>mRNA_1701 ID=mRNA_1701|Name=jgi.p|Nanoce1779_2|15168|organism=Nannochloropsis oceanica|type=CDS|length=381bp|location=Sequence derived from alignment at scaffold_1:1275673..1276364+ (Nannochloropsis oceanica)
ATGAATGTTGACAGTATTAACATTTTGTCACTCCCGGGAGCGATTTTGGC
TCGCTTACTTGCTGCGGTTGCTAGGTTTATACCTGATGTTTCTCGTGCTT
GGCGTCGCACAGCACGTCCGAATACACGTTCTAATGTCCTTAGCTTTTTG
CCTAACTTTCCAATATACCTTGGTGTCGTCCTTATGATGACGAAGTCGAA
CACTATTGCCTACTCTGTTTCTACATCCATCTCTCTTTTCTCCTCCGAAA
TACCCACTCCATCGTCTCTTTTCCCTCTGTCTATGACACCTCTCTTGCTT
CTTGTGTATGCGTGTATGCGCGCGCGCGTATGTACACACATGTATTGGGA
CACCTTCACCGCCTATGAATGTAAAACATAA
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Synonyms
Publications