jgi.p|Nanoce1779_2|573135, mRNA_1700 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|573135
Unique Name	mRNA_1700
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2286
Alignment location	scaffold_1:1273375..1275660 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	573221
Track	FilteredModels2
ProteinId	573135

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_1	supercontig	scaffold_1:1273375..1275660 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|573135	gene_1700	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|573135	mRNA_1700-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_1700	CDS_1700	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_1:1273375..1275660+
coding sequence from alignment at scaffold_1:1273375..1275660+

mRNA sequence

>mRNA_1700 ID=mRNA_1700|Name=jgi.p|Nanoce1779_2|573135|organism=Nannochloropsis oceanica|type=mRNA|length=2286bp
CGCTTTCAGTCAATGGTGACGCACGAATGCCACCTCGAAGAGGCGGACGT
GGAGGATCAGCAGGAGGAGGAGGGGGAGGAGGAGGAAAAGAAGCAAGCAA
CCTGGCGGACACAAGGCATACAGAGTTTTGCAGAGGAGGAGGAGTTGTAC
ACCGCATTGCAATATGGCGTGGTGGCCATTGTTGGCCCACAAGCAAGTGG
GAAATCCACCTTATTGAATGCTTTGTTTGGAACAAGGTTTCCGGTGCTTA
ATGTGAGGGATGCAGGGGCGGGAAGGAGGACGACGAGGGGCGTTTGGGTT
GACCTTGGCAGCGAGAAAGGGAGTAGCTGCAACAGTGCCAGCAGTAGTAG
CAGTCCAACAGCAACCTTATCGTCTGCTTGCCAAAGTCAAAGACCGCTGG
TGGTCCTGGACACGGAAGGGTTGGAAAGCGTGGCACGTGGGGAGGGGAGC
GACCTCTTCGATCGGCAGCTCTCCGCGCTAGCAGTAACGGCCGCCGACGT
TATCATTTTAAATGTATGGGCGAGGGATATTAGAGGGGGCCGGATGGGAG
GGGAGCTGCATGCATCGTTGCTGCAGACATTGATCGAGCGGACGACGACG
GTGACGACGAGGAGCTCGAGTGGAAGGGCGAGTGAAGGAGGAAAGAAAAA
GAAAGAAGAGAAAGAGAATCAGGGAAAGACAGTAGCAACAACAACCACGA
CGAAGACCACTGTCTCTAGACTGACCAAGAGGAGGAAGGCGTTGGTGGTG
GTCTTGAGGGACTCAGAGCAGCTGGATGGAGACGCGGCGGGGGCCCTGGG
CATCGTCACGCGCTGCCTTGAAGAGGCTTACGCTGCTCTGGGACACCCCC
CCCCTTCCTCCTCCTCTTCCTTCTCCTCCTTTTCCGCCTCTTTAGTGAAA
GGATCGAAGAAATCGACCACGACGAAGAAGGAGGGAGGGAAAGCAGAGGA
AGGGGGGTTGGACGTACGGGTGGTAGCAATGCCTTCCAGAGAATTCCAGC
CAAGTGCGTTCGAAGAGGCAGTGCAAGAGCTTCGACGCACTCTCCTGCTC
TTTGACCGAGAATCGTCAGCAAACGCAACAGGGATCGGAAGAGCTGAATT
GTCAACAATCAAGACGAAGAAGCCGTCCTCCTGGTCAGAAGCACCCACGC
AGCTCTTCCAACCGGTACCTCTTTCCGAATTCCCCGCCTTCGCCGCTGAG
CTCTGGGCCTCCATCATCCAGGAAAGTGCCGGAGGGATGGTTGGAGACAG
CCCTGCCTCCCTCCCGTCCCCCTCAAAGCGAGGAACGGACGAAGAAGAGA
TCCAAGCCTTCATTCGTCGGAAGGTGGTGGAAAGCATTGTCCAGGAGGCG
GAGAAACGCATCGAGAGATTGGGGCATAAGGTAGAGGCAGCTGCCAGTGA
GATGCCCATTTTAGAATACGGCCGCGACGCCGACAGCATCATTACCTCCT
CACTCAAATCGCTCTCGGTCCGCCTTCCTCCCTCTGCTGCTGCTGCTGCT
GCTGCTGCCACGACCGCGGAATCTGATGTCATTGCCGCACTCACGCGCCG
ACTTGCTCCCTCCTTCCGCCAACACCTCGACGCCCTGAACGAGTATTACT
TTGCAAAATTCCAAGACCGTTTTACTGGCCTCTTTCTCCCTGTACGTGCC
TTGGACAAGGAGGCGACGTCCATAACAAAAGACGTGAGCACCGCCTTCCA
AAAAGCGGCCGAAGCAGCTGTTCCAGCTTCCGTAGGGCGGAGGAAGGGAA
GGATGCAGGGGTGGGAGTGGGAATGGGCGTTAGAACGGTTGAAGGATGAG
ATGGACTTGGAAGTGGCGGATCGGAGGATGGAGGTGGAGGTTCTTTTTCC
AGGGGAGGAAGAGTTGGAGATGGGGAGGAGCCGGTTCCTGAGGAAGTCAT
GGTGGAAGAAGGTGGTACTCAAGGCGGCTGTGTTGTACGTAAACTACTTG
CAGACAGTCCACGCTGCACAAGGCATGGCCCGGGCGGCGAAAAGGAGACA
GGAAAAATATCCTCCAATTCCCATGTTCTAGATTGTGGAGTGTTGTAGTG
TCGGAGGGAGCTGCCAGAGGAAGAGGAATGAGAGGACGGGAAATATACTA
AGACAGATGATTCGTGAAATGATTAGACACAAAGGCAACGTAGGTCGAAA
AGACAAAAATGCACTCACTCACAGCATACCATACCTGAATGACAATAAAA
AAAAGATCATAAACTAGAAGACATGACAGCACTGCAGCACTGTGGGTGCT
AAGACGACCCAAGGCGACCTTTATCATGAAATCACC

protein sequence of jgi.p|Nanoce1779_2|573135

>mRNA_1700-protein ID=mRNA_1700-protein|Name=jgi.p|Nanoce1779_2|573135|organism=Nannochloropsis oceanica|type=polypeptide|length=673bp
MVTHECHLEEADVEDQQEEEGEEEEKKQATWRTQGIQSFAEEEELYTALQ
YGVVAIVGPQASGKSTLLNALFGTRFPVLNVRDAGAGRRTTRGVWVDLGS
EKGSSCNSASSSSSPTATLSSACQSQRPLVVLDTEGLESVARGEGSDLFD
RQLSALAVTAADVIILNVWARDIRGGRMGGELHASLLQTLIERTTTVTTR
SSSGRASEGGKKKKEEKENQGKTVATTTTTKTTVSRLTKRRKALVVVLRD
SEQLDGDAAGALGIVTRCLEEAYAALGHPPPSSSSSFSSFSASLVKGSKK
STTTKKEGGKAEEGGLDVRVVAMPSREFQPSAFEEAVQELRRTLLLFDRE
SSANATGIGRAELSTIKTKKPSSWSEAPTQLFQPVPLSEFPAFAAELWAS
IIQESAGGMVGDSPASLPSPSKRGTDEEEIQAFIRRKVVESIVQEAEKRI
ERLGHKVEAAASEMPILEYGRDADSIITSSLKSLSVRLPPSAAAAAAAAT
TAESDVIAALTRRLAPSFRQHLDALNEYYFAKFQDRFTGLFLPVRALDKE
ATSITKDVSTAFQKAAEAAVPASVGRRKGRMQGWEWEWALERLKDEMDLE
VADRRMEVEVLFPGEEELEMGRSRFLRKSWWKKVVLKAAVLYVNYLQTVH
AAQGMARAAKRRQEKYPPIPMF*

mRNA from alignment at scaffold_1:1273375..1275660+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_1700 ID=mRNA_1700|Name=jgi.p|Nanoce1779_2|573135|organism=Nannochloropsis oceanica|type=mRNA|length=2286bp|location=Sequence derived from alignment at scaffold_1:1273375..1275660+ (Nannochloropsis oceanica)
CGCTTTCAGTCAATGGTGACGCACGAATGCCACCTCGAAGAGGCGGACGT
GGAGGATCAGCAGGAGGAGGAGGGGGAGGAGGAGGAAAAGAAGCAAGCAA
CCTGGCGGACACAAGGCATACAGAGTTTTGCAGAGGAGGAGGAGTTGTAC
ACCGCATTGCAATATGGCGTGGTGGCCATTGTTGGCCCACAAGCAAGTGG
GAAATCCACCTTATTGAATGCTTTGTTTGGAACAAGGTTTCCGGTGCTTA
ATGTGAGGGATGCAGGGGCGGGAAGGAGGACGACGAGGGGCGTTTGGGTT
GACCTTGGCAGCGAGAAAGGGAGTAGCTGCAACAGTGCCAGCAGTAGTAG
CAGTCCAACAGCAACCTTATCGTCTGCTTGCCAAAGTCAAAGACCGCTGG
TGGTCCTGGACACGGAAGGGTTGGAAAGCGTGGCACGTGGGGAGGGGAGC
GACCTCTTCGATCGGCAGCTCTCCGCGCTAGCAGTAACGGCCGCCGACGT
TATCATTTTAAATGTATGGGCGAGGGATATTAGAGGGGGCCGGATGGGAG
GGGAGCTGCATGCATCGTTGCTGCAGACATTGATCGAGCGGACGACGACG
GTGACGACGAGGAGCTCGAGTGGAAGGGCGAGTGAAGGAGGAAAGAAAAA
GAAAGAAGAGAAAGAGAATCAGGGAAAGACAGTAGCAACAACAACCACGA
CGAAGACCACTGTCTCTAGACTGACCAAGAGGAGGAAGGCGTTGGTGGTG
GTCTTGAGGGACTCAGAGCAGCTGGATGGAGACGCGGCGGGGGCCCTGGG
CATCGTCACGCGCTGCCTTGAAGAGGCTTACGCTGCTCTGGGACACCCCC
CCCCTTCCTCCTCCTCTTCCTTCTCCTCCTTTTCCGCCTCTTTAGTGAAA
GGATCGAAGAAATCGACCACGACGAAGAAGGAGGGAGGGAAAGCAGAGGA
AGGGGGGTTGGACGTACGGGTGGTAGCAATGCCTTCCAGAGAATTCCAGC
CAAGTGCGTTCGAAGAGGCAGTGCAAGAGCTTCGACGCACTCTCCTGCTC
TTTGACCGAGAATCGTCAGCAAACGCAACAGGGATCGGAAGAGCTGAATT
GTCAACAATCAAGACGAAGAAGCCGTCCTCCTGGTCAGAAGCACCCACGC
AGCTCTTCCAACCGGTACCTCTTTCCGAATTCCCCGCCTTCGCCGCTGAG
CTCTGGGCCTCCATCATCCAGGAAAGTGCCGGAGGGATGGTTGGAGACAG
CCCTGCCTCCCTCCCGTCCCCCTCAAAGCGAGGAACGGACGAAGAAGAGA
TCCAAGCCTTCATTCGTCGGAAGGTGGTGGAAAGCATTGTCCAGGAGGCG
GAGAAACGCATCGAGAGATTGGGGCATAAGGTAGAGGCAGCTGCCAGTGA
GATGCCCATTTTAGAATACGGCCGCGACGCCGACAGCATCATTACCTCCT
CACTCAAATCGCTCTCGGTCCGCCTTCCTCCCTCTGCTGCTGCTGCTGCT
GCTGCTGCCACGACCGCGGAATCTGATGTCATTGCCGCACTCACGCGCCG
ACTTGCTCCCTCCTTCCGCCAACACCTCGACGCCCTGAACGAGTATTACT
TTGCAAAATTCCAAGACCGTTTTACTGGCCTCTTTCTCCCTGTACGTGCC
TTGGACAAGGAGGCGACGTCCATAACAAAAGACGTGAGCACCGCCTTCCA
AAAAGCGGCCGAAGCAGCTGTTCCAGCTTCCGTAGGGCGGAGGAAGGGAA
GGATGCAGGGGTGGGAGTGGGAATGGGCGTTAGAACGGTTGAAGGATGAG
ATGGACTTGGAAGTGGCGGATCGGAGGATGGAGGTGGAGGTTCTTTTTCC
AGGGGAGGAAGAGTTGGAGATGGGGAGGAGCCGGTTCCTGAGGAAGTCAT
GGTGGAAGAAGGTGGTACTCAAGGCGGCTGTGTTGTACGTAAACTACTTG
CAGACAGTCCACGCTGCACAAGGCATGGCCCGGGCGGCGAAAAGGAGACA
GGAAAAATATCCTCCAATTCCCATGTTCTAGATTGTGGAGTGTTGTAGTG
TCGGAGGGAGCTGCCAGAGGAAGAGGAATGAGAGGACGGGAAATATACTA
AGACAGATGATTCGTGAAATGATTAGACACAAAGGCAACGTAGGTCGAAA
AGACAAAAATGCACTCACTCACAGCATACCATACCTGAATGACAATAAAA
AAAAGATCATAAACTAGAAGACATGACAGCACTGCAGCACTGTGGGTGCT
AAGACGACCCAAGGCGACCTTTATCATGAAATCACC

Coding sequence (CDS) from alignment at scaffold_1:1273375..1275660+

>mRNA_1700 ID=mRNA_1700|Name=jgi.p|Nanoce1779_2|573135|organism=Nannochloropsis oceanica|type=CDS|length=2019bp|location=Sequence derived from alignment at scaffold_1:1273375..1275660+ (Nannochloropsis oceanica)
ATGGTGACGCACGAATGCCACCTCGAAGAGGCGGACGTGGAGGATCAGCA
GGAGGAGGAGGGGGAGGAGGAGGAAAAGAAGCAAGCAACCTGGCGGACAC
AAGGCATACAGAGTTTTGCAGAGGAGGAGGAGTTGTACACCGCATTGCAA
TATGGCGTGGTGGCCATTGTTGGCCCACAAGCAAGTGGGAAATCCACCTT
ATTGAATGCTTTGTTTGGAACAAGGTTTCCGGTGCTTAATGTGAGGGATG
CAGGGGCGGGAAGGAGGACGACGAGGGGCGTTTGGGTTGACCTTGGCAGC
GAGAAAGGGAGTAGCTGCAACAGTGCCAGCAGTAGTAGCAGTCCAACAGC
AACCTTATCGTCTGCTTGCCAAAGTCAAAGACCGCTGGTGGTCCTGGACA
CGGAAGGGTTGGAAAGCGTGGCACGTGGGGAGGGGAGCGACCTCTTCGAT
CGGCAGCTCTCCGCGCTAGCAGTAACGGCCGCCGACGTTATCATTTTAAA
TGTATGGGCGAGGGATATTAGAGGGGGCCGGATGGGAGGGGAGCTGCATG
CATCGTTGCTGCAGACATTGATCGAGCGGACGACGACGGTGACGACGAGG
AGCTCGAGTGGAAGGGCGAGTGAAGGAGGAAAGAAAAAGAAAGAAGAGAA
AGAGAATCAGGGAAAGACAGTAGCAACAACAACCACGACGAAGACCACTG
TCTCTAGACTGACCAAGAGGAGGAAGGCGTTGGTGGTGGTCTTGAGGGAC
TCAGAGCAGCTGGATGGAGACGCGGCGGGGGCCCTGGGCATCGTCACGCG
CTGCCTTGAAGAGGCTTACGCTGCTCTGGGACACCCCCCCCCTTCCTCCT
CCTCTTCCTTCTCCTCCTTTTCCGCCTCTTTAGTGAAAGGATCGAAGAAA
TCGACCACGACGAAGAAGGAGGGAGGGAAAGCAGAGGAAGGGGGGTTGGA
CGTACGGGTGGTAGCAATGCCTTCCAGAGAATTCCAGCCAAGTGCGTTCG
AAGAGGCAGTGCAAGAGCTTCGACGCACTCTCCTGCTCTTTGACCGAGAA
TCGTCAGCAAACGCAACAGGGATCGGAAGAGCTGAATTGTCAACAATCAA
GACGAAGAAGCCGTCCTCCTGGTCAGAAGCACCCACGCAGCTCTTCCAAC
CGGTACCTCTTTCCGAATTCCCCGCCTTCGCCGCTGAGCTCTGGGCCTCC
ATCATCCAGGAAAGTGCCGGAGGGATGGTTGGAGACAGCCCTGCCTCCCT
CCCGTCCCCCTCAAAGCGAGGAACGGACGAAGAAGAGATCCAAGCCTTCA
TTCGTCGGAAGGTGGTGGAAAGCATTGTCCAGGAGGCGGAGAAACGCATC
GAGAGATTGGGGCATAAGGTAGAGGCAGCTGCCAGTGAGATGCCCATTTT
AGAATACGGCCGCGACGCCGACAGCATCATTACCTCCTCACTCAAATCGC
TCTCGGTCCGCCTTCCTCCCTCTGCTGCTGCTGCTGCTGCTGCTGCCACG
ACCGCGGAATCTGATGTCATTGCCGCACTCACGCGCCGACTTGCTCCCTC
CTTCCGCCAACACCTCGACGCCCTGAACGAGTATTACTTTGCAAAATTCC
AAGACCGTTTTACTGGCCTCTTTCTCCCTGTACGTGCCTTGGACAAGGAG
GCGACGTCCATAACAAAAGACGTGAGCACCGCCTTCCAAAAAGCGGCCGA
AGCAGCTGTTCCAGCTTCCGTAGGGCGGAGGAAGGGAAGGATGCAGGGGT
GGGAGTGGGAATGGGCGTTAGAACGGTTGAAGGATGAGATGGACTTGGAA
GTGGCGGATCGGAGGATGGAGGTGGAGGTTCTTTTTCCAGGGGAGGAAGA
GTTGGAGATGGGGAGGAGCCGGTTCCTGAGGAAGTCATGGTGGAAGAAGG
TGGTACTCAAGGCGGCTGTGTTGTACGTAAACTACTTGCAGACAGTCCAC
GCTGCACAAGGCATGGCCCGGGCGGCGAAAAGGAGACAGGAAAAATATCC
TCCAATTCCCATGTTCTAG

Synonyms

Publications