jgi.p|Nanoce1779_2|576435, mRNA_170 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|576435
Unique NamemRNA_170
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1220
Alignment locationscaffold_3:434307..435526 +

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Properties
Property NameValue
TranscriptId576521
TrackFilteredModels2
ProteinId576435
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_3supercontigscaffold_3:434307..435526 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|576435gene_170Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|576435mRNA_170-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_170CDS_170Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_170 ID=mRNA_170|Name=jgi.p|Nanoce1779_2|576435|organism=Nannochloropsis oceanica|type=mRNA|length=1220bp
CAGTACTGCCTTCACAAGCACCCCGACGCGCGCTTCCTTTTCTGTCTCCT
CCTCCTCGTCGTCGACGCACAAATCAGAGGATGTCCTGCCCTTTCCGCAC
GTGGGAGGGCGACCGACGGACGAGGAGATGGCAGCAGAGGACGCGGCGGC
CGAAGCGGAGCCCCAAGAGAGTCACATGAAGGACGGACTGGCTATCAAGA
TGGCCACCTCGAGCTTTATGGGTAGGAGGAGGTTTTATAAAAGTGTCGGC
GTCCGCCCCTCCCTCGATGAAGCTGGTAAGCATGTCCAGCACTACGAAGT
CACTCTTGACGGGTATCCACTCAAAACACCCGGCACCGAAAAGCCCTACC
GCCTCCCGACCAAAGGTCTGGCCCTTGCTGTAGCCTTGGAGTGGGATCAG
CAAGTGACGTATAAAGGGATAGAGCCTACATATATGCCTTTAACGGGCAT
GGCTACCATTGCATTGGACGAGATTATTTTTAGTAGGCAATCGACCATAG
ATAGGTGCTTGCGGTACCTTGCCACGGACACAGTTTGTTACTGCTTTCCC
GAGGAGGAAGACGACCACAAGCTCCTCCGACGACAGCAGAAGGCTTGGGA
GCCATTGTTGGCCTGGTTGAAGGATGAATATGGGGTGCATATTGCGAAAC
CCTCGCATATGTTGGGTGTGTGTCATAATACCCCCGAGACCTTAAAAAAG
GTAGGCTTAATGCTTCAGGAGATGGACCCCTTTACCCTGGCAGCATTCCT
CTCTCTTGTTCTTGATCTCAAGAGTGTGATCACTGCGTTGGCTGTGGTGT
TCAGGCACGTGACGATTGAGGAGGCCTGTCAGGCTAGTGCTTTGGAAGAG
ATGCACCAGAAGGCTGCATGGGGGTCAGTGGATCTTTATCACGAGCTGGA
AGAGACGGTACTATATTCGCAGGCTGCCGCGGCGTCAAGTTTTTTATGGT
TGTTGGCCGAAGAGGAGAAGGGAAGTAAGAAGGCGAAGGCGGGGTTGATG
CCTCACCAAGAGTTGAGGGCGCGGGTCAAGGCAAGGCTGAGGAAGGAATT
TCCGGAGAGCACCCCGAAATAGTGAGCGAGACGGTGGGAGGGTGGATGTT
GGAATAGTCAATATCGATAAGGCACAAAACAGCTGAAGTTACGTATTTTT
TAAAATGTAAATTTACTTAAAAATTTCGACACGTAAGGACCTTGATCATA
TTATCATTTAATGAAGTGCC
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protein sequence of jgi.p|Nanoce1779_2|576435

>mRNA_170-protein ID=mRNA_170-protein|Name=jgi.p|Nanoce1779_2|576435|organism=Nannochloropsis oceanica|type=polypeptide|length=315bp
MAAEDAAAEAEPQESHMKDGLAIKMATSSFMGRRRFYKSVGVRPSLDEAG
KHVQHYEVTLDGYPLKTPGTEKPYRLPTKGLALAVALEWDQQVTYKGIEP
TYMPLTGMATIALDEIIFSRQSTIDRCLRYLATDTVCYCFPEEEDDHKLL
RRQQKAWEPLLAWLKDEYGVHIAKPSHMLGVCHNTPETLKKVGLMLQEMD
PFTLAAFLSLVLDLKSVITALAVVFRHVTIEEACQASALEEMHQKAAWGS
VDLYHELEETVLYSQAAAASSFLWLLAEEEKGSKKAKAGLMPHQELRARV
KARLRKEFPESTPK*
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mRNA from alignment at scaffold_3:434307..435526+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_170 ID=mRNA_170|Name=jgi.p|Nanoce1779_2|576435|organism=Nannochloropsis oceanica|type=mRNA|length=1220bp|location=Sequence derived from alignment at scaffold_3:434307..435526+ (Nannochloropsis oceanica)
CAGTACTGCCTTCACAAGCACCCCGACGCGCGCTTCCTTTTCTGTCTCCT
CCTCCTCGTCGTCGACGCACAAATCAGAGGATGTCCTGCCCTTTCCGCAC
GTGGGAGGGCGACCGACGGACGAGGAGATGGCAGCAGAGGACGCGGCGGC
CGAAGCGGAGCCCCAAGAGAGTCACATGAAGGACGGACTGGCTATCAAGA
TGGCCACCTCGAGCTTTATGGGTAGGAGGAGGTTTTATAAAAGTGTCGGC
GTCCGCCCCTCCCTCGATGAAGCTGGTAAGCATGTCCAGCACTACGAAGT
CACTCTTGACGGGTATCCACTCAAAACACCCGGCACCGAAAAGCCCTACC
GCCTCCCGACCAAAGGTCTGGCCCTTGCTGTAGCCTTGGAGTGGGATCAG
CAAGTGACGTATAAAGGGATAGAGCCTACATATATGCCTTTAACGGGCAT
GGCTACCATTGCATTGGACGAGATTATTTTTAGTAGGCAATCGACCATAG
ATAGGTGCTTGCGGTACCTTGCCACGGACACAGTTTGTTACTGCTTTCCC
GAGGAGGAAGACGACCACAAGCTCCTCCGACGACAGCAGAAGGCTTGGGA
GCCATTGTTGGCCTGGTTGAAGGATGAATATGGGGTGCATATTGCGAAAC
CCTCGCATATGTTGGGTGTGTGTCATAATACCCCCGAGACCTTAAAAAAG
GTAGGCTTAATGCTTCAGGAGATGGACCCCTTTACCCTGGCAGCATTCCT
CTCTCTTGTTCTTGATCTCAAGAGTGTGATCACTGCGTTGGCTGTGGTGT
TCAGGCACGTGACGATTGAGGAGGCCTGTCAGGCTAGTGCTTTGGAAGAG
ATGCACCAGAAGGCTGCATGGGGGTCAGTGGATCTTTATCACGAGCTGGA
AGAGACGGTACTATATTCGCAGGCTGCCGCGGCGTCAAGTTTTTTATGGT
TGTTGGCCGAAGAGGAGAAGGGAAGTAAGAAGGCGAAGGCGGGGTTGATG
CCTCACCAAGAGTTGAGGGCGCGGGTCAAGGCAAGGCTGAGGAAGGAATT
TCCGGAGAGCACCCCGAAATAGTGAGCGAGACGGTGGGAGGGTGGATGTT
GGAATAGTCAATATCGATAAGGCACAAAACAGCTGAAGTTACGTATTTTT
TAAAATGTAAATTTACTTAAAAATTTCGACACGTAAGGACCTTGATCATA
TTATCATTTAATGAAGTGCC
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Coding sequence (CDS) from alignment at scaffold_3:434307..435526+

>mRNA_170 ID=mRNA_170|Name=jgi.p|Nanoce1779_2|576435|organism=Nannochloropsis oceanica|type=CDS|length=945bp|location=Sequence derived from alignment at scaffold_3:434307..435526+ (Nannochloropsis oceanica)
ATGGCAGCAGAGGACGCGGCGGCCGAAGCGGAGCCCCAAGAGAGTCACAT
GAAGGACGGACTGGCTATCAAGATGGCCACCTCGAGCTTTATGGGTAGGA
GGAGGTTTTATAAAAGTGTCGGCGTCCGCCCCTCCCTCGATGAAGCTGGT
AAGCATGTCCAGCACTACGAAGTCACTCTTGACGGGTATCCACTCAAAAC
ACCCGGCACCGAAAAGCCCTACCGCCTCCCGACCAAAGGTCTGGCCCTTG
CTGTAGCCTTGGAGTGGGATCAGCAAGTGACGTATAAAGGGATAGAGCCT
ACATATATGCCTTTAACGGGCATGGCTACCATTGCATTGGACGAGATTAT
TTTTAGTAGGCAATCGACCATAGATAGGTGCTTGCGGTACCTTGCCACGG
ACACAGTTTGTTACTGCTTTCCCGAGGAGGAAGACGACCACAAGCTCCTC
CGACGACAGCAGAAGGCTTGGGAGCCATTGTTGGCCTGGTTGAAGGATGA
ATATGGGGTGCATATTGCGAAACCCTCGCATATGTTGGGTGTGTGTCATA
ATACCCCCGAGACCTTAAAAAAGGTAGGCTTAATGCTTCAGGAGATGGAC
CCCTTTACCCTGGCAGCATTCCTCTCTCTTGTTCTTGATCTCAAGAGTGT
GATCACTGCGTTGGCTGTGGTGTTCAGGCACGTGACGATTGAGGAGGCCT
GTCAGGCTAGTGCTTTGGAAGAGATGCACCAGAAGGCTGCATGGGGGTCA
GTGGATCTTTATCACGAGCTGGAAGAGACGGTACTATATTCGCAGGCTGC
CGCGGCGTCAAGTTTTTTATGGTTGTTGGCCGAAGAGGAGAAGGGAAGTA
AGAAGGCGAAGGCGGGGTTGATGCCTCACCAAGAGTTGAGGGCGCGGGTC
AAGGCAAGGCTGAGGAAGGAATTTCCGGAGAGCACCCCGAAATAG
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Synonyms
Publications