jgi.p|Nanoce1779_2|626996, mRNA_1697 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|626996
Unique Name	mRNA_1697
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1834
Alignment location	scaffold_1:1266686..1268629 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	627082
Track	FilteredModels2
ProteinId	626996

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_1	supercontig	scaffold_1:1266686..1268629 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|626996	gene_1697	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|626996	mRNA_1697-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_1697	CDS_1697	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_1:1266686..1268629+
coding sequence from alignment at scaffold_1:1266686..1268629+

mRNA sequence

>mRNA_1697 ID=mRNA_1697|Name=jgi.p|Nanoce1779_2|626996|organism=Nannochloropsis oceanica|type=mRNA|length=1834bp
TTGGTGTTGGCGAGTGATGTGCGACTCGGTGGGAGCTCCTCCACACCCCT
TGCCCTCCCCATTCACCCCTGTAAAATGGCCCACGCTCGCACTCAATTTA
CGATACCCACACCACATACAGATCTAGGGCTAGCGCGTGCTGCTGCCACG
CAGCCGGTAGAGGAGGCACCAGCCAACGCCGGGAGCCAGGAGACGGAGAG
GCATCATGATAATCACTTTGTTCCACCGATGCAGCAGCAACCGCACACAC
TCCAGCTTCATGCGCACCGGCATTCTCTTTCTCACCCTGAGCGCATTTGG
GGCGCTCTCCTTCTCGACCACCTTGTGCCGAGCCGCCGTGACTGCCCCAC
CATCCTCAAGTACCAGCGCCAGACCGCCATCATCATCGACAGCCTCCTCC
TCTTCTCCCTTGTCCTCCTCCTCCTCTTCCTCCTCCCCCTTATCCCCGTC
ATCTGCTACCAGAAGAAGCGGCAGAGACATCCATGAAGTACCATGGGGTG
AAATCTTTAGTGCATTGCAAGACAGTAATTTAGGAGCAGAAGACATGCGT
GATTTACAAGTATACATGCAAGATACAATAAAAGCGCAGCAGGCAGCACA
GGCGGAGGAGGAGGGTAGAAAGAGGAGGAGGAGGAGACGGAGAAGATTGG
ATGCAGGAGAGACGACAGCAGCAGTAGGAGTAGAAGGAGCAGAAGGAGCT
GGAACGGAGGAAAGTTTAGCAACTCCGGTAACCACAGCGTCTGCTGGAGA
AGGAGAGGATAGTGAGGGGGAGGAGATGGACGACGCGCCATCACCACGAA
CGACATTTGAGTGGAAGAGCACTATTGCCGCTTTCAAGGAGCAAACCAAA
ATCATTGAGCGTTCGATCTCCCTTCGCAAGGACGGCAATGAAAAACTTGC
GGCGGGGGATATAGAGGGCGCATACAGTCAGTACGAAGAGGCCCTCATGG
TACTAGAAAAAGGCACGGTCGTGCAAACGGGAAGGACGAGAAGGTGTGCG
CAGTCGTGTCAATTGAACATGGCAGTGGTCGAGACCAAGAGATCGGACTA
CGCTAAGGCCCTGGGAATGTATAGTACGGTGTTGGCAGGCCTTGAGAGTG
GAAGTGAGGGGGGAAAGGGGGACGACAAAGCGGTGCGCTGGCAATGTCTG
ACCAAGCGGGCCAGAATAGCGAGGAGGATGGGGAGGATGGAGGAAGCGTT
TAAGGACTTGGTGCAGGCAAATCAACTCAAGCCCAACGACCAAAAAGTTG
CGGCGGAATTGGAGGAAATGGGAGGGACCCCTGTGACGCCTCCGCCGCAG
GCTTTCTGTTCTTCCTTTTTGCCGAGCGCGGCAGGGGGTGAGTCGCCCTT
GGATGCGTTGCTCGGGGGAGAGGGAGGAGGAGGGGCGGATATTCTTGGCG
GTCTGCTGGGATCACTGGGAAGTGGGGCAGGAGGACTGGGGGGAGCAGGA
GGGGAAGGAGATATTTTGGGGGGGCTGATGGGTAACTATTTGTCGTCCAT
GGGCTCAAGGATGGTGGATATGTTGGAGCAGCCGGAGACGTTGACGATGG
TGTGCACCTTGTTAAAAAAACTTCAACCCGATTATCTAGAGTCCCTGGCC
GTGACCGCTAACCTCCCCGTGTCCAAGGGGACTATCAGATGGATCCATGA
GAAGGCTACAGGTCTTGAGCCACGGGATATCAAGCGGTGGGTGAGTAGGG
GAAAATGGGCCCATTCATCCTACGTGTCCACGAAGAGGACATGGGAGAGT
GTGAAGCCCCTGGTGAGACCCACCAGGCTAGTGATGACGTATTGCTTGGT
CTTGAGGTGGATGGCAGCGTGTCTGCTGGGGTAG

protein sequence of jgi.p|Nanoce1779_2|626996

>mRNA_1697-protein ID=mRNA_1697-protein|Name=jgi.p|Nanoce1779_2|626996|organism=Nannochloropsis oceanica|type=polypeptide|length=543bp
MIITLFHRCSSNRTHSSFMRTGILFLTLSAFGALSFSTTLCRAAVTAPPS
SSTSARPPSSSTASSSSPLSSSSSSSSPLSPSSATRRSGRDIHEVPWGEI
FSALQDSNLGAEDMRDLQVYMQDTIKAQQAAQAEEEGRKRRRRRRRRLDA
GETTAAVGVEGAEGAGTEESLATPVTTASAGEGEDSEGEEMDDAPSPRTT
FEWKSTIAAFKEQTKIIERSISLRKDGNEKLAAGDIEGAYSQYEEALMVL
EKGTVVQTGRTRRCAQSCQLNMAVVETKRSDYAKALGMYSTVLAGLESGS
EGGKGDDKAVRWQCLTKRARIARRMGRMEEAFKDLVQANQLKPNDQKVAA
ELEEMGGTPVTPPPQAFCSSFLPSAAGGESPLDALLGGEGGGGADILGGL
LGSLGSGAGGLGGAGGEGDILGGLMGNYLSSMGSRMVDMLEQPETLTMVC
TLLKKLQPDYLESLAVTANLPVSKGTIRWIHEKATGLEPRDIKRWVSRGK
WAHSSYVSTKRTWESVKPLVRPTRLVMTYCLVLRWMAACLLG*

mRNA from alignment at scaffold_1:1266686..1268629+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_1697 ID=mRNA_1697|Name=jgi.p|Nanoce1779_2|626996|organism=Nannochloropsis oceanica|type=mRNA|length=1944bp|location=Sequence derived from alignment at scaffold_1:1266686..1268629+ (Nannochloropsis oceanica)
TTGGTGTTGGCGAGTGATGTGCGACTCGGTGGGAGCTCCTCCACACCCCT
TGCCCTCCCCATTCACCCCTGTAAAATGGCCCACGCTCGCACTCAATTTA
CGATACCCACACCACATACAGATCTAGGGCTAGCGCGTGCTGCTGCCACG
CAGCCGGTAGAGGAGGCACCAGCCAACGCCGGGAGCCAGGAGACGGAGAG
GCATCATGATAATCACTTTGTTCCACCGATGCAGCAGCAACCGCACACAC
TCCAGCTTCATGCGCACCGGCATTCTCTTTCTCACCCTGAGCGCATTTGG
GGCGCTCTCCTTCTCGACCACCTTGTGCCGAGCCGCCGTGACTGCCCCAC
CATCCTCAAGGTATGTACTGATAGTGCGTCGACACTATCCACCCCATACC
TTCTCCTAGTGATGCCCCTCCTCCCTCCTCTCTTGCCTCACATGTCCTGA
ACACGACCCTAAAATAACAGTACCAGCGCCAGACCGCCATCATCATCGAC
AGCCTCCTCCTCTTCTCCCTTGTCCTCCTCCTCCTCTTCCTCCTCCCCCT
TATCCCCGTCATCTGCTACCAGAAGAAGCGGCAGAGACATCCATGAAGTA
CCATGGGGTGAAATCTTTAGTGCATTGCAAGACAGTAATTTAGGAGCAGA
AGACATGCGTGATTTACAAGTATACATGCAAGATACAATAAAAGCGCAGC
AGGCAGCACAGGCGGAGGAGGAGGGTAGAAAGAGGAGGAGGAGGAGACGG
AGAAGATTGGATGCAGGAGAGACGACAGCAGCAGTAGGAGTAGAAGGAGC
AGAAGGAGCTGGAACGGAGGAAAGTTTAGCAACTCCGGTAACCACAGCGT
CTGCTGGAGAAGGAGAGGATAGTGAGGGGGAGGAGATGGACGACGCGCCA
TCACCACGAACGACATTTGAGTGGAAGAGCACTATTGCCGCTTTCAAGGA
GCAAACCAAAATCATTGAGCGTTCGATCTCCCTTCGCAAGGACGGCAATG
AAAAACTTGCGGCGGGGGATATAGAGGGCGCATACAGTCAGTACGAAGAG
GCCCTCATGGTACTAGAAAAAGGCACGGTCGTGCAAACGGGAAGGACGAG
AAGGTGTGCGCAGTCGTGTCAATTGAACATGGCAGTGGTCGAGACCAAGA
GATCGGACTACGCTAAGGCCCTGGGAATGTATAGTACGGTGTTGGCAGGC
CTTGAGAGTGGAAGTGAGGGGGGAAAGGGGGACGACAAAGCGGTGCGCTG
GCAATGTCTGACCAAGCGGGCCAGAATAGCGAGGAGGATGGGGAGGATGG
AGGAAGCGTTTAAGGACTTGGTGCAGGCAAATCAACTCAAGCCCAACGAC
CAAAAAGTTGCGGCGGAATTGGAGGAAATGGGAGGGACCCCTGTGACGCC
TCCGCCGCAGGCTTTCTGTTCTTCCTTTTTGCCGAGCGCGGCAGGGGGTG
AGTCGCCCTTGGATGCGTTGCTCGGGGGAGAGGGAGGAGGAGGGGCGGAT
ATTCTTGGCGGTCTGCTGGGATCACTGGGAAGTGGGGCAGGAGGACTGGG
GGGAGCAGGAGGGGAAGGAGATATTTTGGGGGGGCTGATGGGTAACTATT
TGTCGTCCATGGGCTCAAGGATGGTGGATATGTTGGAGCAGCCGGAGACG
TTGACGATGGTGTGCACCTTGTTAAAAAAACTTCAACCCGATTATCTAGA
GTCCCTGGCCGTGACCGCTAACCTCCCCGTGTCCAAGGGGACTATCAGAT
GGATCCATGAGAAGGCTACAGGTCTTGAGCCACGGGATATCAAGCGGTGG
GTGAGTAGGGGAAAATGGGCCCATTCATCCTACGTGTCCACGAAGAGGAC
ATGGGAGAGTGTGAAGCCCCTGGTGAGACCCACCAGGCTAGTGATGACGT
ATTGCTTGGTCTTGAGGTGGATGGCAGCGTGTCTGCTGGGGTAG

Coding sequence (CDS) from alignment at scaffold_1:1266686..1268629+

>mRNA_1697 ID=mRNA_1697|Name=jgi.p|Nanoce1779_2|626996|organism=Nannochloropsis oceanica|type=CDS|length=3258bp|location=Sequence derived from alignment at scaffold_1:1266686..1268629+ (Nannochloropsis oceanica)
ATGATAATCACTTTGTTCCACCGATGCAGCAGCAACCGCACACACTCCAG
CTTCATGCGCACCGGCATTCTCTTTCTCACCCTGAGCGCATTTGGGGCGC
TCTCCTTCTCGACCACCTTGTGCCGAGCCGCCGTGACTGCCCCACCATCC
TCAAGTACCAGCGCCAGACCGCCATCATCATCGACAGCCTCCTCCTCTTC
TCCCTTGTCCTCCTCCTCCTCTTCCTCCTCCCCCTTATCCCCGTCATCTG
CTACCAGAAGAAGCGGCAGAGACATCCATGAAGTACCATGGGGTGAAATC
TTTAGTGCATTGCAAGACAGTAATTTAGGAGCAGAAGACATGCGTGATTT
ACAAGTATACATGCAAGATACAATAAAAGCGCAGCAGGCAGCACAGGCGG
AGGAGGAGGGTAGAAAGAGGAGGAGGAGGAGACGGAGAAGATTGGATGCA
GGAGAGACGACAGCAGCAGTAGGAGTAGAAGGAGCAGAAGGAGCTGGAAC
GGAGGAAAGTTTAGCAACTCCGGTAACCACAGCGTCTGCTGGAGAAGGAG
AGGATAGTGAGGGGGAGGAGATGGACGACGCGCCATCACCACGAACGACA
TTTGAGTGGAAGAGCACTATTGCCGCTTTCAAGGAGCAAACCAAAATCAT
TGAGCGTTCGATCTCCCTTCGCAAGGACGGCAATGAAAAACTTGCGGCGG
GGGATATAGAGGGCGCATACAGTCAGTACGAAGAGGCCCTCATGGTACTA
GAAAAAGGCACGGTCGTGCAAACGGGAAGGACGAGAAGGTGTGCGCAGTC
GTGTCAATTGAACATGGCAGTGGTCGAGACCAAGAGATCGGACTACGCTA
AGGCCCTGGGAATGTATAGTACGGTGTTGGCAGGCCTTGAGAGTGGAAGT
GAGGGGGGAAAGGGGGACGACAAAGCGGTGCGCTGGCAATGTCTGACCAA
GCGGGCCAGAATAGCGAGGAGGATGGGGAGGATGGAGGAAGCGTTTAAGG
ACTTGGTGCAGGCAAATCAACTCAAGCCCAACGACCAAAAAGTTGCGGCG
GAATTGGAGGAAATGGGAGGGACCCCTGTGACGCCTCCGCCGCAGGCTTT
CTGTTCTTCCTTTTTGCCGAGCGCGGCAGGGGGTGAGTCGCCCTTGGATG
CGTTGCTCGGGGGAGAGGGAGGAGGAGGGGCGGATATTCTTGGCGGTCTG
CTGGGATCACTGGGAAGTGGGGCAGGAGGACTGGGGGGAGCAGGAGGGGA
AGGAGATATTTTGGGGGGGCTGATGGGTAACTATTTGTCGTCCATGGGCT
CAAGGATGGTGGATATGTTGGAGCAGCCGGAGACGTTGACGATGGTGTGC
ACCTTGTTAAAAAAACTTCAACCCGATTATCTAGAGTCCCTGGCCGTGAC
CGCTAACCTCCCCGTGTCCAAGGGGACTATCAGATGGATCCATGAGAAGG
CTACAGGTCTTGAGCCACGGGATATCAAGCGGTGGGTGAGTAGGGGAAAA
TGGGCCCATTCATCCTACGTGTCCACGAAGAGGACATGGGAGAGTGTGAA
GCCCCTGGTGAGACCCACCAGGCTAGTGATGACGTATTGCTTGGTCTTGA
GGTGGATGGCAGCGTGTCTGCTGGGGTAGATGATAATCACTTTGTTCCAC
CGATGCAGCAGCAACCGCACACACTCCAGCTTCATGCGCACCGGCATTCT
CTTTCTCACCCTGAGCGCATTTGGGGCGCTCTCCTTCTCGACCACCTTGT
GCCGAGCCGCCGTGACTGCCCCACCATCCTCAAGTACCAGCGCCAGACCG
CCATCATCATCGACAGCCTCCTCCTCTTCTCCCTTGTCCTCCTCCTCCTC
TTCCTCCTCCCCCTTATCCCCGTCATCTGCTACCAGAAGAAGCGGCAGAG
ACATCCATGAAGTACCATGGGGTGAAATCTTTAGTGCATTGCAAGACAGT
AATTTAGGAGCAGAAGACATGCGTGATTTACAAGTATACATGCAAGATAC
AATAAAAGCGCAGCAGGCAGCACAGGCGGAGGAGGAGGGTAGAAAGAGGA
GGAGGAGGAGACGGAGAAGATTGGATGCAGGAGAGACGACAGCAGCAGTA
GGAGTAGAAGGAGCAGAAGGAGCTGGAACGGAGGAAAGTTTAGCAACTCC
GGTAACCACAGCGTCTGCTGGAGAAGGAGAGGATAGTGAGGGGGAGGAGA
TGGACGACGCGCCATCACCACGAACGACATTTGAGTGGAAGAGCACTATT
GCCGCTTTCAAGGAGCAAACCAAAATCATTGAGCGTTCGATCTCCCTTCG
CAAGGACGGCAATGAAAAACTTGCGGCGGGGGATATAGAGGGCGCATACA
GTCAGTACGAAGAGGCCCTCATGGTACTAGAAAAAGGCACGGTCGTGCAA
ACGGGAAGGACGAGAAGGTGTGCGCAGTCGTGTCAATTGAACATGGCAGT
GGTCGAGACCAAGAGATCGGACTACGCTAAGGCCCTGGGAATGTATAGTA
CGGTGTTGGCAGGCCTTGAGAGTGGAAGTGAGGGGGGAAAGGGGGACGAC
AAAGCGGTGCGCTGGCAATGTCTGACCAAGCGGGCCAGAATAGCGAGGAG
GATGGGGAGGATGGAGGAAGCGTTTAAGGACTTGGTGCAGGCAAATCAAC
TCAAGCCCAACGACCAAAAAGTTGCGGCGGAATTGGAGGAAATGGGAGGG
ACCCCTGTGACGCCTCCGCCGCAGGCTTTCTGTTCTTCCTTTTTGCCGAG
CGCGGCAGGGGGTGAGTCGCCCTTGGATGCGTTGCTCGGGGGAGAGGGAG
GAGGAGGGGCGGATATTCTTGGCGGTCTGCTGGGATCACTGGGAAGTGGG
GCAGGAGGACTGGGGGGAGCAGGAGGGGAAGGAGATATTTTGGGGGGGCT
GATGGGTAACTATTTGTCGTCCATGGGCTCAAGGATGGTGGATATGTTGG
AGCAGCCGGAGACGTTGACGATGGTGTGCACCTTGTTAAAAAAACTTCAA
CCCGATTATCTAGAGTCCCTGGCCGTGACCGCTAACCTCCCCGTGTCCAA
GGGGACTATCAGATGGATCCATGAGAAGGCTACAGGTCTTGAGCCACGGG
ATATCAAGCGGTGGGTGAGTAGGGGAAAATGGGCCCATTCATCCTACGTG
TCCACGAAGAGGACATGGGAGAGTGTGAAGCCCCTGGTGAGACCCACCAG
GCTAGTGATGACGTATTGCTTGGTCTTGAGGTGGATGGCAGCGTGTCTGC
TGGGGTAG

Synonyms

Publications