jgi.p|Nanoce1779_2|573110, mRNA_1693 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|573110
Unique Name	mRNA_1693
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1750
Alignment location	scaffold_1:1250969..1252718 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	573196
Track	FilteredModels2
ProteinId	573110

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_1	supercontig	scaffold_1:1250969..1252718 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|573110	gene_1693	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|573110	mRNA_1693-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_1693	CDS_1693	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_1:1250969..1252718+
coding sequence from alignment at scaffold_1:1250969..1252718+

mRNA sequence

>mRNA_1693 ID=mRNA_1693|Name=jgi.p|Nanoce1779_2|573110|organism=Nannochloropsis oceanica|type=mRNA|length=1750bp
CACACACAAACAATGTGTCCTAAGGAGCGAATAAAGGCACTTGGAATTGG
GCAGGCACATGAGTCATGATGATTGCCAAGCACACTCCTTGCATAGGGAC
ACACTTACACGCTCTGCAGAGAGAGGGACTCCAGTTCAAAAACAAACGGC
TTGCTTTACATGAGCGATTATCATCCCCCCCGTGTCCTCCCTACAGGGCC
ACAATACAAGCAACACACCGCGACGATGGGAAAGACGTCAACCGCCGCAG
CTAAGCGATCGACCACTTCCAGGGCCATGACTGTAAGCAGCAGCAGGAGT
GACAAGGAGCTGACAATAATGCCCTCGACCGAGCTTCAGGACCTTGATTC
GCTCGCCAATCAAATGGAGGAGCAGCTCATGCAGGAATTTGAGGCCTTAT
TGACAGCGAGACGTAAACAAGAGATTGATGGAGCGGACAGCAAGATTGGA
GCATTGAAAACGTCTGCTGGCGCTAGCGGTAGCAGTTTCGGGAACAAGGA
CCAAGATGCCCGCGATGCCTTGTACTGGAAGCATATGTACGAACGCCTGC
GCGACTTGCGGGAAACGGACGCTGAGCGTTTGTTGCGGGAGACGGTGCAG
CATTCGGAAGAACGGGAAAAGTCGTTATTAGACGTGATTGCGCATCTGGA
GGCAGGCGGCGAGACGGGTAATGGTGGCAAGGCCGGGGCCAAGGTGGACG
TACGGTTGAGCGACGTGTCTATGTGTGGGGTGGTGAGAGGAGGTGGGGGT
AGTGAATACACATCAGGGGCGGCGACGGATACGGATGGACAGGAAATCGA
TGTAGTGGAGATGAACAAGGAGGTCATGGCGGAGAAGGAGGCACGAATTG
CCTCATTGGAGGGGAAAATAGCGGATTTGAAGCGGGTCTTGATGGCTTAC
CAACGCTTTACTTCCTTGTGTATGACAATGGAACGTAAGGCGTCTGGCCC
CGGAGGAGTAAGCAAATTGAGCTGTACGGCTATAAATCACGTGCATAAAA
AGGCGGTGAAGTTCTCGTTGAAAATGAACGTGGACGTGGAGGATAATTTG
GGGATGGACGCGACATTCCGACCGGTGGCGAACAAGGAGTTGTTGCCGCA
GTTTTTGCAGCAGGAGGCGACTCTGGAGACGAAGCAATGCCCGTTGCTCT
TGTTGTCGATCTTGAAGACATTGTTTGACGAAAAGAAGAATGGGGCGGGA
AAAGAATAGAAGAATGCGGGTAATGCGCAAGACAGGATAGAGAGTGTGTA
TGAGTGAGCGGGTGGATTCCAAAAAGCTGGTTGGGTGGATACGGGAAAAG
GGAGATGATATGTGTATTAAAGAGAAATTTAAAAAGTCGAAACTTTGTCC
TCTTCCTTTAAATATTGAGCAGGAGAAGGAGGACACATGACAGGTTTATA
TTGGGATTCCACGAGGTGGCTTGTTGAGAGAGCGTGCAGCATCTAGCTAT
GGCTGCCTAGTGAATGAAATGCACGATTCAAAAGCGCGCCTGGAGCCTGG
AGAAAATAAAGGACCAGCCCTTGAAATGGGTTGCGAGTCAATCGAAGACA
GGTAGACGATGAGGATGACGGTACGATTATATTTAATGTGACTGTTTGTA
CGTATGGCTAAGGAGAAGGAACGGCGAGAAGAAAACAACCAAAAAAAGAA
AAAGAAAAAAAGGGTTGGAGGGGAAAGAGTTGACAGTAGAACGAAAAGAG
GGAAAACAGAGAAATCTGTCCAGCCCTAAAGCATCAAATCATTTATTCCA

protein sequence of jgi.p|Nanoce1779_2|573110

>mRNA_1693-protein ID=mRNA_1693-protein|Name=jgi.p|Nanoce1779_2|573110|organism=Nannochloropsis oceanica|type=polypeptide|length=350bp
MSDYHPPRVLPTGPQYKQHTATMGKTSTAAAKRSTTSRAMTVSSSRSDKE
LTIMPSTELQDLDSLANQMEEQLMQEFEALLTARRKQEIDGADSKIGALK
TSAGASGSSFGNKDQDARDALYWKHMYERLRDLRETDAERLLRETVQHSE
EREKSLLDVIAHLEAGGETGNGGKAGAKVDVRLSDVSMCGVVRGGGGSEY
TSGAATDTDGQEIDVVEMNKEVMAEKEARIASLEGKIADLKRVLMAYQRF
TSLCMTMERKASGPGGVSKLSCTAINHVHKKAVKFSLKMNVDVEDNLGMD
ATFRPVANKELLPQFLQQEATLETKQCPLLLLSILKTLFDEKKNGAGKE*

mRNA from alignment at scaffold_1:1250969..1252718+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_1693 ID=mRNA_1693|Name=jgi.p|Nanoce1779_2|573110|organism=Nannochloropsis oceanica|type=mRNA|length=1750bp|location=Sequence derived from alignment at scaffold_1:1250969..1252718+ (Nannochloropsis oceanica)
CACACACAAACAATGTGTCCTAAGGAGCGAATAAAGGCACTTGGAATTGG
GCAGGCACATGAGTCATGATGATTGCCAAGCACACTCCTTGCATAGGGAC
ACACTTACACGCTCTGCAGAGAGAGGGACTCCAGTTCAAAAACAAACGGC
TTGCTTTACATGAGCGATTATCATCCCCCCCGTGTCCTCCCTACAGGGCC
ACAATACAAGCAACACACCGCGACGATGGGAAAGACGTCAACCGCCGCAG
CTAAGCGATCGACCACTTCCAGGGCCATGACTGTAAGCAGCAGCAGGAGT
GACAAGGAGCTGACAATAATGCCCTCGACCGAGCTTCAGGACCTTGATTC
GCTCGCCAATCAAATGGAGGAGCAGCTCATGCAGGAATTTGAGGCCTTAT
TGACAGCGAGACGTAAACAAGAGATTGATGGAGCGGACAGCAAGATTGGA
GCATTGAAAACGTCTGCTGGCGCTAGCGGTAGCAGTTTCGGGAACAAGGA
CCAAGATGCCCGCGATGCCTTGTACTGGAAGCATATGTACGAACGCCTGC
GCGACTTGCGGGAAACGGACGCTGAGCGTTTGTTGCGGGAGACGGTGCAG
CATTCGGAAGAACGGGAAAAGTCGTTATTAGACGTGATTGCGCATCTGGA
GGCAGGCGGCGAGACGGGTAATGGTGGCAAGGCCGGGGCCAAGGTGGACG
TACGGTTGAGCGACGTGTCTATGTGTGGGGTGGTGAGAGGAGGTGGGGGT
AGTGAATACACATCAGGGGCGGCGACGGATACGGATGGACAGGAAATCGA
TGTAGTGGAGATGAACAAGGAGGTCATGGCGGAGAAGGAGGCACGAATTG
CCTCATTGGAGGGGAAAATAGCGGATTTGAAGCGGGTCTTGATGGCTTAC
CAACGCTTTACTTCCTTGTGTATGACAATGGAACGTAAGGCGTCTGGCCC
CGGAGGAGTAAGCAAATTGAGCTGTACGGCTATAAATCACGTGCATAAAA
AGGCGGTGAAGTTCTCGTTGAAAATGAACGTGGACGTGGAGGATAATTTG
GGGATGGACGCGACATTCCGACCGGTGGCGAACAAGGAGTTGTTGCCGCA
GTTTTTGCAGCAGGAGGCGACTCTGGAGACGAAGCAATGCCCGTTGCTCT
TGTTGTCGATCTTGAAGACATTGTTTGACGAAAAGAAGAATGGGGCGGGA
AAAGAATAGAAGAATGCGGGTAATGCGCAAGACAGGATAGAGAGTGTGTA
TGAGTGAGCGGGTGGATTCCAAAAAGCTGGTTGGGTGGATACGGGAAAAG
GGAGATGATATGTGTATTAAAGAGAAATTTAAAAAGTCGAAACTTTGTCC
TCTTCCTTTAAATATTGAGCAGGAGAAGGAGGACACATGACAGGTTTATA
TTGGGATTCCACGAGGTGGCTTGTTGAGAGAGCGTGCAGCATCTAGCTAT
GGCTGCCTAGTGAATGAAATGCACGATTCAAAAGCGCGCCTGGAGCCTGG
AGAAAATAAAGGACCAGCCCTTGAAATGGGTTGCGAGTCAATCGAAGACA
GGTAGACGATGAGGATGACGGTACGATTATATTTAATGTGACTGTTTGTA
CGTATGGCTAAGGAGAAGGAACGGCGAGAAGAAAACAACCAAAAAAAGAA
AAAGAAAAAAAGGGTTGGAGGGGAAAGAGTTGACAGTAGAACGAAAAGAG
GGAAAACAGAGAAATCTGTCCAGCCCTAAAGCATCAAATCATTTATTCCA

Coding sequence (CDS) from alignment at scaffold_1:1250969..1252718+

>mRNA_1693 ID=mRNA_1693|Name=jgi.p|Nanoce1779_2|573110|organism=Nannochloropsis oceanica|type=CDS|length=1050bp|location=Sequence derived from alignment at scaffold_1:1250969..1252718+ (Nannochloropsis oceanica)
ATGAGCGATTATCATCCCCCCCGTGTCCTCCCTACAGGGCCACAATACAA
GCAACACACCGCGACGATGGGAAAGACGTCAACCGCCGCAGCTAAGCGAT
CGACCACTTCCAGGGCCATGACTGTAAGCAGCAGCAGGAGTGACAAGGAG
CTGACAATAATGCCCTCGACCGAGCTTCAGGACCTTGATTCGCTCGCCAA
TCAAATGGAGGAGCAGCTCATGCAGGAATTTGAGGCCTTATTGACAGCGA
GACGTAAACAAGAGATTGATGGAGCGGACAGCAAGATTGGAGCATTGAAA
ACGTCTGCTGGCGCTAGCGGTAGCAGTTTCGGGAACAAGGACCAAGATGC
CCGCGATGCCTTGTACTGGAAGCATATGTACGAACGCCTGCGCGACTTGC
GGGAAACGGACGCTGAGCGTTTGTTGCGGGAGACGGTGCAGCATTCGGAA
GAACGGGAAAAGTCGTTATTAGACGTGATTGCGCATCTGGAGGCAGGCGG
CGAGACGGGTAATGGTGGCAAGGCCGGGGCCAAGGTGGACGTACGGTTGA
GCGACGTGTCTATGTGTGGGGTGGTGAGAGGAGGTGGGGGTAGTGAATAC
ACATCAGGGGCGGCGACGGATACGGATGGACAGGAAATCGATGTAGTGGA
GATGAACAAGGAGGTCATGGCGGAGAAGGAGGCACGAATTGCCTCATTGG
AGGGGAAAATAGCGGATTTGAAGCGGGTCTTGATGGCTTACCAACGCTTT
ACTTCCTTGTGTATGACAATGGAACGTAAGGCGTCTGGCCCCGGAGGAGT
AAGCAAATTGAGCTGTACGGCTATAAATCACGTGCATAAAAAGGCGGTGA
AGTTCTCGTTGAAAATGAACGTGGACGTGGAGGATAATTTGGGGATGGAC
GCGACATTCCGACCGGTGGCGAACAAGGAGTTGTTGCCGCAGTTTTTGCA
GCAGGAGGCGACTCTGGAGACGAAGCAATGCCCGTTGCTCTTGTTGTCGA
TCTTGAAGACATTGTTTGACGAAAAGAAGAATGGGGCGGGAAAAGAATAG

Synonyms

Publications