jgi.p|Nanoce1779_2|573108, mRNA_1692 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|573108
Unique NamemRNA_1692
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length819
Alignment locationscaffold_1:1249986..1250804 -

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Properties
Property NameValue
TranscriptId573194
TrackFilteredModels2
ProteinId573108
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_1supercontigscaffold_1:1249986..1250804 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|573108gene_1692Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|573108mRNA_1692-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1692CDS_1692Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1692 ID=mRNA_1692|Name=jgi.p|Nanoce1779_2|573108|organism=Nannochloropsis oceanica|type=mRNA|length=819bp
AGACAAATAGGGCAGCCTCATAATCACTACTTCACCTGCCTAGCCCACTA
AACATGCGGGTAAGTTTTATTGACCCAGCTAGGCATGTGCCACCTCCCGT
CGTCCTTCCTTTTCTTACTAAGCCCTCCCCACATAACCGCAACCACCAAG
TCTATACAGAATTTTGGCTTCTTCAATTTATTTGGCAAGACCAAGAAGAA
TGACAAAAAGAGGGCGCAGAAGCAGTCCGAGAAGAAGGCGGGTGATGGAT
CGTCCCTTGAGGACGAGGTACGTGTGTGTCCGACTTGGGAGACTGGGAAG
TGTATGGCTGCATTTGTGTCTAGCTGCGCATTTTTGTGTGCATACACAGC
CAGAGTCAGGTGCCGCACAAGTGGGGGTGCCCCGGACATCGTCTGCCACC
GAACAACTCCCCCCCCCGATTTATTTCTCCACAAACGGCTTTGCAGCCTC
CCCTCATTTTCTCCCTCGCGCACACCCCCGGCAAGCTTTTCTTGGTTCCT
TCAACAATTTGCTTAAAGCCTCCAACCCTTCCTTATCATTTCCTTCCTAT
TTCCAAAAGGTGGCTCAAAAGATTAAGCAAGAAGCTCCAGAGCCCATCGT
TAAGACAGGCTCGGAGGCGGCCGCGAAGCCGCAAGTGAGCACGGGTCTTG
TTTATCTCGCACAGGCCAAGCCCGCCATTACTTCTACTTCTTCTCCCGAA
TCGAGTGTTTCCTGTGCTTCTTCCAAAGAAGAAGACGACGAGGACGACGA
GGACGACGACGAAGATGACGACGACGAGGAGGAGGACGAGGACGAGAACG
AGGAGGACGAGGAGGAGGA
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protein sequence of jgi.p|Nanoce1779_2|573108

>mRNA_1692-protein ID=mRNA_1692-protein|Name=jgi.p|Nanoce1779_2|573108|organism=Nannochloropsis oceanica|type=polypeptide|length=144bp
MCHLPSSFLFLLSPPHITATTKSIQNFGFFNLFGKTKKNDKKRAQKQSEK
KAGDGSSLEDEVRVCPTWETGKCMAAFVSSCAFLCAYTARVRCRTSGGAP
DIVCHRTTPPPDLFLHKRLCSLPSFSPSRTPPASFSWFLQQFA*
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mRNA from alignment at scaffold_1:1249986..1250804-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1692 ID=mRNA_1692|Name=jgi.p|Nanoce1779_2|573108|organism=Nannochloropsis oceanica|type=mRNA|length=819bp|location=Sequence derived from alignment at scaffold_1:1249986..1250804- (Nannochloropsis oceanica)
AGACAAATAGGGCAGCCTCATAATCACTACTTCACCTGCCTAGCCCACTA
AACATGCGGGTAAGTTTTATTGACCCAGCTAGGCATGTGCCACCTCCCGT
CGTCCTTCCTTTTCTTACTAAGCCCTCCCCACATAACCGCAACCACCAAG
TCTATACAGAATTTTGGCTTCTTCAATTTATTTGGCAAGACCAAGAAGAA
TGACAAAAAGAGGGCGCAGAAGCAGTCCGAGAAGAAGGCGGGTGATGGAT
CGTCCCTTGAGGACGAGGTACGTGTGTGTCCGACTTGGGAGACTGGGAAG
TGTATGGCTGCATTTGTGTCTAGCTGCGCATTTTTGTGTGCATACACAGC
CAGAGTCAGGTGCCGCACAAGTGGGGGTGCCCCGGACATCGTCTGCCACC
GAACAACTCCCCCCCCCGATTTATTTCTCCACAAACGGCTTTGCAGCCTC
CCCTCATTTTCTCCCTCGCGCACACCCCCGGCAAGCTTTTCTTGGTTCCT
TCAACAATTTGCTTAAAGCCTCCAACCCTTCCTTATCATTTCCTTCCTAT
TTCCAAAAGGTGGCTCAAAAGATTAAGCAAGAAGCTCCAGAGCCCATCGT
TAAGACAGGCTCGGAGGCGGCCGCGAAGCCGCAAGTGAGCACGGGTCTTG
TTTATCTCGCACAGGCCAAGCCCGCCATTACTTCTACTTCTTCTCCCGAA
TCGAGTGTTTCCTGTGCTTCTTCCAAAGAAGAAGACGACGAGGACGACGA
GGACGACGACGAAGATGACGACGACGAGGAGGAGGACGAGGACGAGAACG
AGGAGGACGAGGAGGAGGA
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Coding sequence (CDS) from alignment at scaffold_1:1249986..1250804-

>mRNA_1692 ID=mRNA_1692|Name=jgi.p|Nanoce1779_2|573108|organism=Nannochloropsis oceanica|type=CDS|length=432bp|location=Sequence derived from alignment at scaffold_1:1249986..1250804- (Nannochloropsis oceanica)
ATGTGCCACCTCCCGTCGTCCTTCCTTTTCTTACTAAGCCCTCCCCACAT
AACCGCAACCACCAAGTCTATACAGAATTTTGGCTTCTTCAATTTATTTG
GCAAGACCAAGAAGAATGACAAAAAGAGGGCGCAGAAGCAGTCCGAGAAG
AAGGCGGGTGATGGATCGTCCCTTGAGGACGAGGTACGTGTGTGTCCGAC
TTGGGAGACTGGGAAGTGTATGGCTGCATTTGTGTCTAGCTGCGCATTTT
TGTGTGCATACACAGCCAGAGTCAGGTGCCGCACAAGTGGGGGTGCCCCG
GACATCGTCTGCCACCGAACAACTCCCCCCCCCGATTTATTTCTCCACAA
ACGGCTTTGCAGCCTCCCCTCATTTTCTCCCTCGCGCACACCCCCGGCAA
GCTTTTCTTGGTTCCTTCAACAATTTGCTTAA
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Synonyms
Publications