jgi.p|Nanoce1779_2|573107, mRNA_1691 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|573107
Unique Name	mRNA_1691
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1879
Alignment location	scaffold_1:1246935..1248813 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	573193
Track	FilteredModels2
ProteinId	573107

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_1	supercontig	scaffold_1:1246935..1248813 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|573107	gene_1691	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|573107	mRNA_1691-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_1691	CDS_1691	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_1:1246935..1248813+
coding sequence from alignment at scaffold_1:1246935..1248813+

mRNA sequence

>mRNA_1691 ID=mRNA_1691|Name=jgi.p|Nanoce1779_2|573107|organism=Nannochloropsis oceanica|type=mRNA|length=1879bp
TTCCTGGAAATGTAGCCGGGGAGATCCGGGGATGCTTCCTTTTATGGCGT
GACATCTTCTTCTCCTCTTTCCTTTGTTTCCTTGAGCTCAAACGCGAATA
CAAAAGACAACCATCGAACAACAAACCAGAAGTCGGAACCATTTCATACA
GTCTAAAAATGTAAACTCACTATATCTCATACAAACCAATTTATTCGCCA
TGGCCATACACAGACACTGCTCGTAGGGCATCGGCGAAATATACAAGATA
CCAACCTATCAATCTAATCAATTATCTAAATGTCGACTTTCCTAATTATG
CTCTTGCCTCTTTCAATCCAGCTAAGTTCCTTAGCCACCCTTCAAGATCA
ACTCGGGCGTATGCACTAATGTTCTTTCACAAAATCAAACGACTCAGCTA
AATTTCCGGATATGTCTTACAATCAACATATGTACCTACACCGCAATCCT
TTTTCCTTCCTCCTCTCCTTCGTCCTCCACTTCCTTCCCATTTCCTCTTT
CACCCCGGCCTTTTATTTACCTCTTTACATCACAGTCAGCAACCCCACTC
TCAACGCCAGCACCACTGCCACGTACATCCCTCCCCACCCCATCGTCGCC
ACCATCGCAGCCTTTCCAAGCACCAACCGCCATTCCACCTCCCGAACCAT
CACCTTCCTGCTCTCATCTGCGTCTACTCCTGCTGCTTCTAATGGACTAA
TCACAGCTGACGCTGTCCTTCCATGCGGAGGAGAGCAGTTTCCAAAAGGA
GAGGGAGCCACGGCCACCGTCAGGGAGGAGGGAGAAGAGGTACCCGTCTT
CTCCTCTGCTTCTCTCTTGGTGATGGTAGCGGAGAATGAAGAGGCGGATA
CAAGGGAGGAGGAGAAGGCGGAGGAGGCGGCCGAGGAGGAGACAGGAGCC
GCGGCCACCGTCAGCAAGGATGGAATGGAAGCCGTCGTCGTCCTCTCCTC
TGTTCCCTTTTTGGCGATGGTAGCATTGGACAAGGAGGAGGAGGAGGATG
CGGAGGCGGAGGGGGACGGGGAGGAGGAGGAAGAAGAGGTAGAGGGGGAG
ACTGGAGCCGCCGCCACCGTCAGGGAGGATGGAACGGAAGCCGTCGTCGT
CTTCTCCTCTGCTTTCTTTTTTGTGATGGTAGCAATGGACAAGGAGGAGA
AGGAGGAGGCGGAGGCGGAGACGGAAGCCTGGGCCACCTTCAGGGAAGAT
GGGATTGAGGAGGTCGGCGTCTTCTCCTCTGCCTCCTTCTTGATTGTGGT
AGCGGAGGAGGAGGCGGAGAGGGAAGGGGAGGAGGAGGGGGAGCCGGAAG
GGGAGGAAGCAGAGGCGGAGATGGCGGAAGTGGAGACGGGAGCAACGGCC
ATGCTCACGGAAGAGGGAGTGGAGAAGGTCTTATTCTTCTCCTCCCGTTT
CTTCTTGGTGATGGTAGCGGAAGAGTGGAAGGACGAGGAGGAAAAGGAGG
AGGAGGCAGCTACTGCTCTCTGATAAGCCGCAAAGGGAGATCTCAGCTTT
ATGTTGGACAAGAAAAAGCCGCCATTTTTATTATCATCATTCTGTCCGCT
CCTGCTACTGCTGCTCCTGGCAAGCTGGACCTTCGTCCCCGCCGAGATGG
TCTTGCGTTTTTCTACGGGGCAAGGACTCAAATTCAATCCTTCCTCGTCT
TCGTCTTCGTCTTCGTTTCCATCATCGTCCTCGTCCTTATCGCTCTCATG
CCTTCCTTCCTTCACCTTTCTCTCTTCCTCCTTCAAGCTGATCTTTTCAG
CAGCAGAGCGATCGCTTGCACCCACCAGTATTGCCCTACCTTCCTCCACG
GGGGGGAGGCTGACATTGGGCCCTGCGCGATCCTCCTCCTCCTCTTCCTG
CTCAACCTCCTCCTCCTCCTCCTCCTTTT

protein sequence of jgi.p|Nanoce1779_2|573107

>mRNA_1691-protein ID=mRNA_1691-protein|Name=jgi.p|Nanoce1779_2|573107|organism=Nannochloropsis oceanica|type=polypeptide|length=354bp
MSYNQHMYLHRNPFSFLLSFVLHFLPISSFTPAFYLPLYITVSNPTLNAS
TTATYIPPHPIVATIAAFPSTNRHSTSRTITFLLSSASTPAASNGLITAD
AVLPCGGEQFPKGEGATATVREEGEEVPVFSSASLLVMVAENEEADTREE
EKAEEAAEEETGAAATVSKDGMEAVVVLSSVPFLAMVALDKEEEEDAEAE
GDGEEEEEEVEGETGAAATVREDGTEAVVVFSSAFFFVMVAMDKEEKEEA
EAETEAWATFREDGIEEVGVFSSASFLIVVAEEEAEREGEEEGEPEGEEA
EAEMAEVETGATAMLTEEGVEKVLFFSSRFFLVMVAEEWKDEEEKEEEAA
TAL*

mRNA from alignment at scaffold_1:1246935..1248813+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_1691 ID=mRNA_1691|Name=jgi.p|Nanoce1779_2|573107|organism=Nannochloropsis oceanica|type=mRNA|length=1879bp|location=Sequence derived from alignment at scaffold_1:1246935..1248813+ (Nannochloropsis oceanica)
TTCCTGGAAATGTAGCCGGGGAGATCCGGGGATGCTTCCTTTTATGGCGT
GACATCTTCTTCTCCTCTTTCCTTTGTTTCCTTGAGCTCAAACGCGAATA
CAAAAGACAACCATCGAACAACAAACCAGAAGTCGGAACCATTTCATACA
GTCTAAAAATGTAAACTCACTATATCTCATACAAACCAATTTATTCGCCA
TGGCCATACACAGACACTGCTCGTAGGGCATCGGCGAAATATACAAGATA
CCAACCTATCAATCTAATCAATTATCTAAATGTCGACTTTCCTAATTATG
CTCTTGCCTCTTTCAATCCAGCTAAGTTCCTTAGCCACCCTTCAAGATCA
ACTCGGGCGTATGCACTAATGTTCTTTCACAAAATCAAACGACTCAGCTA
AATTTCCGGATATGTCTTACAATCAACATATGTACCTACACCGCAATCCT
TTTTCCTTCCTCCTCTCCTTCGTCCTCCACTTCCTTCCCATTTCCTCTTT
CACCCCGGCCTTTTATTTACCTCTTTACATCACAGTCAGCAACCCCACTC
TCAACGCCAGCACCACTGCCACGTACATCCCTCCCCACCCCATCGTCGCC
ACCATCGCAGCCTTTCCAAGCACCAACCGCCATTCCACCTCCCGAACCAT
CACCTTCCTGCTCTCATCTGCGTCTACTCCTGCTGCTTCTAATGGACTAA
TCACAGCTGACGCTGTCCTTCCATGCGGAGGAGAGCAGTTTCCAAAAGGA
GAGGGAGCCACGGCCACCGTCAGGGAGGAGGGAGAAGAGGTACCCGTCTT
CTCCTCTGCTTCTCTCTTGGTGATGGTAGCGGAGAATGAAGAGGCGGATA
CAAGGGAGGAGGAGAAGGCGGAGGAGGCGGCCGAGGAGGAGACAGGAGCC
GCGGCCACCGTCAGCAAGGATGGAATGGAAGCCGTCGTCGTCCTCTCCTC
TGTTCCCTTTTTGGCGATGGTAGCATTGGACAAGGAGGAGGAGGAGGATG
CGGAGGCGGAGGGGGACGGGGAGGAGGAGGAAGAAGAGGTAGAGGGGGAG
ACTGGAGCCGCCGCCACCGTCAGGGAGGATGGAACGGAAGCCGTCGTCGT
CTTCTCCTCTGCTTTCTTTTTTGTGATGGTAGCAATGGACAAGGAGGAGA
AGGAGGAGGCGGAGGCGGAGACGGAAGCCTGGGCCACCTTCAGGGAAGAT
GGGATTGAGGAGGTCGGCGTCTTCTCCTCTGCCTCCTTCTTGATTGTGGT
AGCGGAGGAGGAGGCGGAGAGGGAAGGGGAGGAGGAGGGGGAGCCGGAAG
GGGAGGAAGCAGAGGCGGAGATGGCGGAAGTGGAGACGGGAGCAACGGCC
ATGCTCACGGAAGAGGGAGTGGAGAAGGTCTTATTCTTCTCCTCCCGTTT
CTTCTTGGTGATGGTAGCGGAAGAGTGGAAGGACGAGGAGGAAAAGGAGG
AGGAGGCAGCTACTGCTCTCTGATAAGCCGCAAAGGGAGATCTCAGCTTT
ATGTTGGACAAGAAAAAGCCGCCATTTTTATTATCATCATTCTGTCCGCT
CCTGCTACTGCTGCTCCTGGCAAGCTGGACCTTCGTCCCCGCCGAGATGG
TCTTGCGTTTTTCTACGGGGCAAGGACTCAAATTCAATCCTTCCTCGTCT
TCGTCTTCGTCTTCGTTTCCATCATCGTCCTCGTCCTTATCGCTCTCATG
CCTTCCTTCCTTCACCTTTCTCTCTTCCTCCTTCAAGCTGATCTTTTCAG
CAGCAGAGCGATCGCTTGCACCCACCAGTATTGCCCTACCTTCCTCCACG
GGGGGGAGGCTGACATTGGGCCCTGCGCGATCCTCCTCCTCCTCTTCCTG
CTCAACCTCCTCCTCCTCCTCCTCCTTTT

Coding sequence (CDS) from alignment at scaffold_1:1246935..1248813+

>mRNA_1691 ID=mRNA_1691|Name=jgi.p|Nanoce1779_2|573107|organism=Nannochloropsis oceanica|type=CDS|length=1062bp|location=Sequence derived from alignment at scaffold_1:1246935..1248813+ (Nannochloropsis oceanica)
ATGTCTTACAATCAACATATGTACCTACACCGCAATCCTTTTTCCTTCCT
CCTCTCCTTCGTCCTCCACTTCCTTCCCATTTCCTCTTTCACCCCGGCCT
TTTATTTACCTCTTTACATCACAGTCAGCAACCCCACTCTCAACGCCAGC
ACCACTGCCACGTACATCCCTCCCCACCCCATCGTCGCCACCATCGCAGC
CTTTCCAAGCACCAACCGCCATTCCACCTCCCGAACCATCACCTTCCTGC
TCTCATCTGCGTCTACTCCTGCTGCTTCTAATGGACTAATCACAGCTGAC
GCTGTCCTTCCATGCGGAGGAGAGCAGTTTCCAAAAGGAGAGGGAGCCAC
GGCCACCGTCAGGGAGGAGGGAGAAGAGGTACCCGTCTTCTCCTCTGCTT
CTCTCTTGGTGATGGTAGCGGAGAATGAAGAGGCGGATACAAGGGAGGAG
GAGAAGGCGGAGGAGGCGGCCGAGGAGGAGACAGGAGCCGCGGCCACCGT
CAGCAAGGATGGAATGGAAGCCGTCGTCGTCCTCTCCTCTGTTCCCTTTT
TGGCGATGGTAGCATTGGACAAGGAGGAGGAGGAGGATGCGGAGGCGGAG
GGGGACGGGGAGGAGGAGGAAGAAGAGGTAGAGGGGGAGACTGGAGCCGC
CGCCACCGTCAGGGAGGATGGAACGGAAGCCGTCGTCGTCTTCTCCTCTG
CTTTCTTTTTTGTGATGGTAGCAATGGACAAGGAGGAGAAGGAGGAGGCG
GAGGCGGAGACGGAAGCCTGGGCCACCTTCAGGGAAGATGGGATTGAGGA
GGTCGGCGTCTTCTCCTCTGCCTCCTTCTTGATTGTGGTAGCGGAGGAGG
AGGCGGAGAGGGAAGGGGAGGAGGAGGGGGAGCCGGAAGGGGAGGAAGCA
GAGGCGGAGATGGCGGAAGTGGAGACGGGAGCAACGGCCATGCTCACGGA
AGAGGGAGTGGAGAAGGTCTTATTCTTCTCCTCCCGTTTCTTCTTGGTGA
TGGTAGCGGAAGAGTGGAAGGACGAGGAGGAAAAGGAGGAGGAGGCAGCT
ACTGCTCTCTGA

Synonyms

Publications