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Properties
| Property Name | Value |
|---|
| TranscriptId | 550881 |
| Track | FilteredModels2 |
| ProteinId | 550795 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_3 | supercontig | scaffold_3:431688..433892 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_169 ID=mRNA_169|Name=jgi.p|Nanoce1779_2|550795|organism=Nannochloropsis oceanica|type=mRNA|length=2077bp
ACAGGTAAGCAACGGACACAGCGCACGACTACCTCACGATCAGCATAGGC
TTCCGGCACGTACTACTGCCACCAGGAGGACGAGTACATGAAGATCATCG
ACAAGATCAAAGACGCTCAAGAAGCCGCGGCCCTCCAGCCTCAACAACCT
CTACCCACCTATTGTTCCTTTGAATTTTTCCCTCCAAAAACGGCGGCAGG
CGTGGAGAACCTGTACATGCGTATTGACCGCCTCGCGTCCTTGGAACCAC
TCTTTGTTGACGTCACCTGGGGTGCAGGCGGGAGCACCGCCGATCTGACC
TTGCAGATTGCTGCAAACGCTCAGAGATATTTGGGACAAGAGGTATTGAT
GCATCTAACGTGTACAAATTTACATGTGGATAAAATCAAGGCGGCCTTGA
ACGAGGCTCGGCAAGCAGGGATTCAGAACATCTTGGCCTTGCGTGGGGAC
CCTCCCAAGGGGGCGACAGCTTGGGAGTGTTGCGAAGGAGGGCTTGCGTA
TGCGATTGACTTGGTGCGATTGATAAAAGAGGAGCACGGAGACTATTTTT
GCATCGCTGTGGCTGGGCATCCCGAGGGGCATCACCGGGAGGGAGGGGGA
GGAGATGGAACGGGGGTGGGGCCGGCAGAGCCCGTTGACCTGGATGAGGA
AATCCAGTATTTGAAGGCGAAAATTGACGCAGGCGCTTCATTTGTCGTGA
CTCAATTTTTTTATGATGCCGAGGTATATTTGGACTACGTGGCTCGGTGT
CGCGCGGCGGGGATTGAGTGTCCGATTATTCCTGGGTTCATGCCTATTCA
AAGCTACATGTCATTTCAACGTATGACCACCTTTTGTCGGACCCGTGTCC
CGGCTGAGATGTGGGAGGAGCTCGCGCCGATTAAGGAGGATGATGAGGCA
GTCCGGAAGTGGGGGGTGATGTACTTGACGAAGCTCTGTCGTCGTCTCTT
GGACGCGGGGGGCACTTGTAATTGTATTCATTTCTACACCCTAAACTTGG
AAAAATCCGTGAGATTGATTTTGGAGAGCCTGGGAATGACAGCCACGGCG
TCTACACGGCGACAATTTCCTTGGCGGGCGTCAAAATTAAGTGCCAGGGC
GGGGGAGGATGTGCGGCCGATTAATTGGGCGAACAGGCCTAAGTCTTACC
TGTCTCGGACGGAGGAGTGGGATGAGTTCCCGAACGGCAGGTGGGGGGAT
GGAAGAAGTCCAGCGTTTGGAGAATTGAGTGATTATCGGTTTGTGGATAC
GTCGTTGGGGGGGTCGAGGGAGGATAGAAGGGCGATGTGGGGAGAGGCGC
CGTTGGAGGAGGAGGAGGTGTTCGAGGCATTTGTGAAATATGTCCAGGGG
AAGATCCCATTATTGCCTTGGTGTGAGGTGCCGTTGCAAGCGGAGACGGG
AACGATATGCACGGATTTGATCAATATTAATAAGGCTGGTTTTTTGACGA
TCAATAGCCAGCCGGCTGTGAACGGGGCAAAGAGCGATGATCCCGTTTTT
GGATGGGGGGGCCCTGGGGGGAGAGTGTACCAGAAGGCGTACGTGGAGTG
TTTTACGTCCCCTCAGAATTTGAAGTTGTTGATGGAGCTGTGTGCGAAGC
GACCAAATTTACAATTTTATGCCGTTGATGTCGCGGGGAATACGTATTCG
AATGGGTCGAAGAAGGCGACGGCCTTGACGTGGGGGGTGTTTCCAAATAA
TGAGATTTTGCAGCCAACAATTTTTGACCCGAACACCTTTCTAGTCTGGA
AGAACGAGGCGTTCCAGTTGTGGACCTCAATTTGGGCGTCTATCTATGAT
GATGAATCGGCGTCGAATGCTTTGATTCACTCCATGCATGACTCGTACTT
TTTGGTGGCGATTGTGGATAATGACTTCTTGAGTACTGCATTGATTTGGA
CGCTATTTCGGGAGATTATTGGAGAGGGAGAGAAGGAGAGGGGAAGTCAA
CATCATCCCCAGTATTCGCTACCTTAGTTCAGCAAGGAAGAGAGGGAAGT
GGAAAGATCTGATGTCTAATATAGGTGCAGTTTGGTGTGTAATACATGCA
AAGAAGGAAATGTTTCAACTGGGCGTC back to topprotein sequence of jgi.p|Nanoce1779_2|550795 >mRNA_169-protein ID=mRNA_169-protein|Name=jgi.p|Nanoce1779_2|550795|organism=Nannochloropsis oceanica|type=polypeptide|length=630bp
MKIIDKIKDAQEAAALQPQQPLPTYCSFEFFPPKTAAGVENLYMRIDRLA
SLEPLFVDVTWGAGGSTADLTLQIAANAQRYLGQEVLMHLTCTNLHVDKI
KAALNEARQAGIQNILALRGDPPKGATAWECCEGGLAYAIDLVRLIKEEH
GDYFCIAVAGHPEGHHREGGGGDGTGVGPAEPVDLDEEIQYLKAKIDAGA
SFVVTQFFYDAEVYLDYVARCRAAGIECPIIPGFMPIQSYMSFQRMTTFC
RTRVPAEMWEELAPIKEDDEAVRKWGVMYLTKLCRRLLDAGGTCNCIHFY
TLNLEKSVRLILESLGMTATASTRRQFPWRASKLSARAGEDVRPINWANR
PKSYLSRTEEWDEFPNGRWGDGRSPAFGELSDYRFVDTSLGGSREDRRAM
WGEAPLEEEEVFEAFVKYVQGKIPLLPWCEVPLQAETGTICTDLININKA
GFLTINSQPAVNGAKSDDPVFGWGGPGGRVYQKAYVECFTSPQNLKLLME
LCAKRPNLQFYAVDVAGNTYSNGSKKATALTWGVFPNNEILQPTIFDPNT
FLVWKNEAFQLWTSIWASIYDDESASNALIHSMHDSYFLVAIVDNDFLST
ALIWTLFREIIGEGEKERGSQHHPQYSLP* back to topmRNA from alignment at scaffold_3:431688..433892- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_169 ID=mRNA_169|Name=jgi.p|Nanoce1779_2|550795|organism=Nannochloropsis oceanica|type=mRNA|length=2205bp|location=Sequence derived from alignment at scaffold_3:431688..433892- (Nannochloropsis oceanica)
ACAGGTAAGCAACGGACACAGCGCACGACTACCTCACGATCAGCATAGGC
TTCCGGCACGTACTACTGCCACCAGGAGGACGAGTACATGAAGATCATCG
ACAAGATCAAAGACGTAAGCAGTCCACGCCGTGATCTCTTTGCATCTCCC
CCGGCCCTGAGTCCTACACTCGTCCTTCCCTCGCCCGGCTCGTACCATGC
TCCCTCGCTCACGCATACCAATTACTACCCACAATTTCACAGGCTCAAGA
AGCCGCGGCCCTCCAGCCTCAACAACCTCTACCCACCTATTGTTCCTTTG
AATTTTTCCCTCCAAAAACGGCGGCAGGCGTGGAGAACCTGTACATGCGT
ATTGACCGCCTCGCGTCCTTGGAACCACTCTTTGTTGACGTCACCTGGGG
TGCAGGCGGGAGCACCGCCGATCTGACCTTGCAGATTGCTGCAAACGCTC
AGAGATATTTGGGACAAGAGGTATTGATGCATCTAACGTGTACAAATTTA
CATGTGGATAAAATCAAGGCGGCCTTGAACGAGGCTCGGCAAGCAGGGAT
TCAGAACATCTTGGCCTTGCGTGGGGACCCTCCCAAGGGGGCGACAGCTT
GGGAGTGTTGCGAAGGAGGGCTTGCGTATGCGATTGACTTGGTGCGATTG
ATAAAAGAGGAGCACGGAGACTATTTTTGCATCGCTGTGGCTGGGCATCC
CGAGGGGCATCACCGGGAGGGAGGGGGAGGAGATGGAACGGGGGTGGGGC
CGGCAGAGCCCGTTGACCTGGATGAGGAAATCCAGTATTTGAAGGCGAAA
ATTGACGCAGGCGCTTCATTTGTCGTGACTCAATTTTTTTATGATGCCGA
GGTATATTTGGACTACGTGGCTCGGTGTCGCGCGGCGGGGATTGAGTGTC
CGATTATTCCTGGGTTCATGCCTATTCAAAGCTACATGTCATTTCAACGT
ATGACCACCTTTTGTCGGACCCGTGTCCCGGCTGAGATGTGGGAGGAGCT
CGCGCCGATTAAGGAGGATGATGAGGCAGTCCGGAAGTGGGGGGTGATGT
ACTTGACGAAGCTCTGTCGTCGTCTCTTGGACGCGGGGGGCACTTGTAAT
TGTATTCATTTCTACACCCTAAACTTGGAAAAATCCGTGAGATTGATTTT
GGAGAGCCTGGGAATGACAGCCACGGCGTCTACACGGCGACAATTTCCTT
GGCGGGCGTCAAAATTAAGTGCCAGGGCGGGGGAGGATGTGCGGCCGATT
AATTGGGCGAACAGGCCTAAGTCTTACCTGTCTCGGACGGAGGAGTGGGA
TGAGTTCCCGAACGGCAGGTGGGGGGATGGAAGAAGTCCAGCGTTTGGAG
AATTGAGTGATTATCGGTTTGTGGATACGTCGTTGGGGGGGTCGAGGGAG
GATAGAAGGGCGATGTGGGGAGAGGCGCCGTTGGAGGAGGAGGAGGTGTT
CGAGGCATTTGTGAAATATGTCCAGGGGAAGATCCCATTATTGCCTTGGT
GTGAGGTGCCGTTGCAAGCGGAGACGGGAACGATATGCACGGATTTGATC
AATATTAATAAGGCTGGTTTTTTGACGATCAATAGCCAGCCGGCTGTGAA
CGGGGCAAAGAGCGATGATCCCGTTTTTGGATGGGGGGGCCCTGGGGGGA
GAGTGTACCAGAAGGCGTACGTGGAGTGTTTTACGTCCCCTCAGAATTTG
AAGTTGTTGATGGAGCTGTGTGCGAAGCGACCAAATTTACAATTTTATGC
CGTTGATGTCGCGGGGAATACGTATTCGAATGGGTCGAAGAAGGCGACGG
CCTTGACGTGGGGGGTGTTTCCAAATAATGAGATTTTGCAGCCAACAATT
TTTGACCCGAACACCTTTCTAGTCTGGAAGAACGAGGCGTTCCAGTTGTG
GACCTCAATTTGGGCGTCTATCTATGATGATGAATCGGCGTCGAATGCTT
TGATTCACTCCATGCATGACTCGTACTTTTTGGTGGCGATTGTGGATAAT
GACTTCTTGAGTACTGCATTGATTTGGACGCTATTTCGGGAGATTATTGG
AGAGGGAGAGAAGGAGAGGGGAAGTCAACATCATCCCCAGTATTCGCTAC
CTTAGTTCAGCAAGGAAGAGAGGGAAGTGGAAAGATCTGATGTCTAATAT
AGGTGCAGTTTGGTGTGTAATACATGCAAAGAAGGAAATGTTTCAACTGG
GCGTC back to topCoding sequence (CDS) from alignment at scaffold_3:431688..433892- >mRNA_169 ID=mRNA_169|Name=jgi.p|Nanoce1779_2|550795|organism=Nannochloropsis oceanica|type=CDS|length=3780bp|location=Sequence derived from alignment at scaffold_3:431688..433892- (Nannochloropsis oceanica)
GCTCAAGAAGCCGCGGCCCTCCAGCCTCAACAACCTCTACCCACCTATTG
TTCCTTTGAATTTTTCCCTCCAAAAACGGCGGCAGGCGTGGAGAACCTGT
ACATGCGTATTGACCGCCTCGCGTCCTTGGAACCACTCTTTGTTGACGTC
ACCTGGGGTGCAGGCGGGAGCACCGCCGATCTGACCTTGCAGATTGCTGC
AAACGCTCAGAGATATTTGGGACAAGAGGTATTGATGCATCTAACGTGTA
CAAATTTACATGTGGATAAAATCAAGGCGGCCTTGAACGAGGCTCGGCAA
GCAGGGATTCAGAACATCTTGGCCTTGCGTGGGGACCCTCCCAAGGGGGC
GACAGCTTGGGAGTGTTGCGAAGGAGGGCTTGCGTATGCGATTGACTTGG
TGCGATTGATAAAAGAGGAGCACGGAGACTATTTTTGCATCGCTGTGGCT
GGGCATCCCGAGGGGCATCACCGGGAGGGAGGGGGAGGAGATGGAACGGG
GGTGGGGCCGGCAGAGCCCGTTGACCTGGATGAGGAAATCCAGTATTTGA
AGGCGAAAATTGACGCAGGCGCTTCATTTGTCGTGACTCAATTTTTTTAT
GATGCCGAGGTATATTTGGACTACGTGGCTCGGTGTCGCGCGGCGGGGAT
TGAGTGTCCGATTATTCCTGGGTTCATGCCTATTCAAAGCTACATGTCAT
TTCAACGTATGACCACCTTTTGTCGGACCCGTGTCCCGGCTGAGATGTGG
GAGGAGCTCGCGCCGATTAAGGAGGATGATGAGGCAGTCCGGAAGTGGGG
GGTGATGTACTTGACGAAGCTCTGTCGTCGTCTCTTGGACGCGGGGGGCA
CTTGTAATTGTATTCATTTCTACACCCTAAACTTGGAAAAATCCGTGAGA
TTGATTTTGGAGAGCCTGGGAATGACAGCCACGGCGTCTACACGGCGACA
ATTTCCTTGGCGGGCGTCAAAATTAAGTGCCAGGGCGGGGGAGGATGTGC
GGCCGATTAATTGGGCGAACAGGCCTAAGTCTTACCTGTCTCGGACGGAG
GAGTGGGATGAGTTCCCGAACGGCAGGTGGGGGGATGGAAGAAGTCCAGC
GTTTGGAGAATTGAGTGATTATCGGTTTGTGGATACGTCGTTGGGGGGGT
CGAGGGAGGATAGAAGGGCGATGTGGGGAGAGGCGCCGTTGGAGGAGGAG
GAGGTGTTCGAGGCATTTGTGAAATATGTCCAGGGGAAGATCCCATTATT
GCCTTGGTGTGAGGTGCCGTTGCAAGCGGAGACGGGAACGATATGCACGG
ATTTGATCAATATTAATAAGGCTGGTTTTTTGACGATCAATAGCCAGCCG
GCTGTGAACGGGGCAAAGAGCGATGATCCCGTTTTTGGATGGGGGGGCCC
TGGGGGGAGAGTGTACCAGAAGGCGTACGTGGAGTGTTTTACGTCCCCTC
AGAATTTGAAGTTGTTGATGGAGCTGTGTGCGAAGCGACCAAATTTACAA
TTTTATGCCGTTGATGTCGCGGGGAATACGTATTCGAATGGGTCGAAGAA
GGCGACGGCCTTGACGTGGGGGGTGTTTCCAAATAATGAGATTTTGCAGC
CAACAATTTTTGACCCGAACACCTTTCTAGTCTGGAAGAACGAGGCGTTC
CAGTTGTGGACCTCAATTTGGGCGTCTATCTATGATGATGAATCGGCGTC
GAATGCTTTGATTCACTCCATGCATGACTCGTACTTTTTGGTGGCGATTG
TGGATAATGACTTCTTGAGTACTGCATTGATTTGGACGCTATTTCGGGAG
ATTATTGGAGAGGGAGAGAAGGAGAGGGGAAGTCAACATCATCCCCAGTA
TTCGCTACCTTAGATGAAGATCATCGACAAGATCAAAGACGCTCAAGAAG
CCGCGGCCCTCCAGCCTCAACAACCTCTACCCACCTATTGTTCCTTTGAA
TTTTTCCCTCCAAAAACGGCGGCAGGCGTGGAGAACCTGTACATGCGTAT
TGACCGCCTCGCGTCCTTGGAACCACTCTTTGTTGACGTCACCTGGGGTG
CAGGCGGGAGCACCGCCGATCTGACCTTGCAGATTGCTGCAAACGCTCAG
AGATATTTGGGACAAGAGGTATTGATGCATCTAACGTGTACAAATTTACA
TGTGGATAAAATCAAGGCGGCCTTGAACGAGGCTCGGCAAGCAGGGATTC
AGAACATCTTGGCCTTGCGTGGGGACCCTCCCAAGGGGGCGACAGCTTGG
GAGTGTTGCGAAGGAGGGCTTGCGTATGCGATTGACTTGGTGCGATTGAT
AAAAGAGGAGCACGGAGACTATTTTTGCATCGCTGTGGCTGGGCATCCCG
AGGGGCATCACCGGGAGGGAGGGGGAGGAGATGGAACGGGGGTGGGGCCG
GCAGAGCCCGTTGACCTGGATGAGGAAATCCAGTATTTGAAGGCGAAAAT
TGACGCAGGCGCTTCATTTGTCGTGACTCAATTTTTTTATGATGCCGAGG
TATATTTGGACTACGTGGCTCGGTGTCGCGCGGCGGGGATTGAGTGTCCG
ATTATTCCTGGGTTCATGCCTATTCAAAGCTACATGTCATTTCAACGTAT
GACCACCTTTTGTCGGACCCGTGTCCCGGCTGAGATGTGGGAGGAGCTCG
CGCCGATTAAGGAGGATGATGAGGCAGTCCGGAAGTGGGGGGTGATGTAC
TTGACGAAGCTCTGTCGTCGTCTCTTGGACGCGGGGGGCACTTGTAATTG
TATTCATTTCTACACCCTAAACTTGGAAAAATCCGTGAGATTGATTTTGG
AGAGCCTGGGAATGACAGCCACGGCGTCTACACGGCGACAATTTCCTTGG
CGGGCGTCAAAATTAAGTGCCAGGGCGGGGGAGGATGTGCGGCCGATTAA
TTGGGCGAACAGGCCTAAGTCTTACCTGTCTCGGACGGAGGAGTGGGATG
AGTTCCCGAACGGCAGGTGGGGGGATGGAAGAAGTCCAGCGTTTGGAGAA
TTGAGTGATTATCGGTTTGTGGATACGTCGTTGGGGGGGTCGAGGGAGGA
TAGAAGGGCGATGTGGGGAGAGGCGCCGTTGGAGGAGGAGGAGGTGTTCG
AGGCATTTGTGAAATATGTCCAGGGGAAGATCCCATTATTGCCTTGGTGT
GAGGTGCCGTTGCAAGCGGAGACGGGAACGATATGCACGGATTTGATCAA
TATTAATAAGGCTGGTTTTTTGACGATCAATAGCCAGCCGGCTGTGAACG
GGGCAAAGAGCGATGATCCCGTTTTTGGATGGGGGGGCCCTGGGGGGAGA
GTGTACCAGAAGGCGTACGTGGAGTGTTTTACGTCCCCTCAGAATTTGAA
GTTGTTGATGGAGCTGTGTGCGAAGCGACCAAATTTACAATTTTATGCCG
TTGATGTCGCGGGGAATACGTATTCGAATGGGTCGAAGAAGGCGACGGCC
TTGACGTGGGGGGTGTTTCCAAATAATGAGATTTTGCAGCCAACAATTTT
TGACCCGAACACCTTTCTAGTCTGGAAGAACGAGGCGTTCCAGTTGTGGA
CCTCAATTTGGGCGTCTATCTATGATGATGAATCGGCGTCGAATGCTTTG
ATTCACTCCATGCATGACTCGTACTTTTTGGTGGCGATTGTGGATAATGA
CTTCTTGAGTACTGCATTGATTTGGACGCTATTTCGGGAGATTATTGGAG
AGGGAGAGAAGGAGAGGGGAAGTCAACATCATCCCCAGTATTCGCTACCT
TAGATGAAGATCATCGACAAGATCAAAGAC back to top
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