jgi.p|Nanoce1779_2|522236, mRNA_1689 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|522236
Unique NamemRNA_1689
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length879
Alignment locationscaffold_1:1240035..1241711 -

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Properties
Property NameValue
TranscriptId522322
TrackFilteredModels2
ProteinId522236
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_1supercontigscaffold_1:1240035..1241711 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|522236gene_1689Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|522236mRNA_1689-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1689CDS_1689Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1689 ID=mRNA_1689|Name=jgi.p|Nanoce1779_2|522236|organism=Nannochloropsis oceanica|type=mRNA|length=879bp
ATGGCCCCTCCTCCTCTCGTCACCCCCAAGCAACGTCAGCACTACCTCAA
GCGAGCCCTCGAGACCTTCACGAAAGAGCACTTGGTAGCCTTGCTGTGTG
ACATCGCAAACAACCTGGGCGGGCCCATTTTCGACGAAGCATACGACAGG
TCCTGTATGGACTTATCGAACCGCAAGGTCTTCGTGCGGGGGATCGCCTG
GGGGACGACCAACGACTCGCTGGGAGAGGCCTTATCTGTATTCGGGCCGA
TTCAGGAGGCCGCGGTCATATGTGACCGGGCAACCGGTAAAAGTAAGGGT
TATGCTTTCGTTACCTTCGACCATGGTGAGTCGGCGTTCAGGCTGTTGGA
TTTACCGTTCATCACGATTGATGGCCGTAATGTTCAGTGCTTTCTGGCGT
CTCAACGGGGGGCGGGTACGACTGGGGGTGGAGGGGGAGGGGAGCATTTG
CGTCAAGTTCTGGTGCGTGGAATGGCGCTTGATGCCTCCCATGACGTGCT
TCGAGGTCTCTTTCACGGAGAAGGTGAAGTAGAAGACGCATTCTTCCTCT
CAGATCCCTCTACCCGTGCCCCCATTGGTGCTGCCTTAGTGACCTTCCGC
GAGCCACGCGTTGCCAGTTTGGTCCTTCGCACCCCTTATAGGGATTTGCC
TGAGGGGAGGGTCTGTGAGATCCTGGCCGTGCCTCCCCCAGCCTCCCTCC
AATCCTCTTTCTCGCCTTCGTCACTCGGAGGAGGAGGAGGAGGAGGAGAG
GAGGAGGGGGGGGGAGAGTGTCTCGCTGTCTTGGGTCAGCAGCTTCAGGC
GCCCTCTTTCGGAATGCCCCAGCCGGCTGCGGGGTTTTATAATGTAGAAG
GGGGTAAGGGGTCGGGATGGCGTCAGTGA
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protein sequence of jgi.p|Nanoce1779_2|522236

>mRNA_1689-protein ID=mRNA_1689-protein|Name=jgi.p|Nanoce1779_2|522236|organism=Nannochloropsis oceanica|type=polypeptide|length=293bp
MAPPPLVTPKQRQHYLKRALETFTKEHLVALLCDIANNLGGPIFDEAYDR
SCMDLSNRKVFVRGIAWGTTNDSLGEALSVFGPIQEAAVICDRATGKSKG
YAFVTFDHGESAFRLLDLPFITIDGRNVQCFLASQRGAGTTGGGGGGEHL
RQVLVRGMALDASHDVLRGLFHGEGEVEDAFFLSDPSTRAPIGAALVTFR
EPRVASLVLRTPYRDLPEGRVCEILAVPPPASLQSSFSPSSLGGGGGGGE
EEGGGECLAVLGQQLQAPSFGMPQPAAGFYNVEGGKGSGWRQ*
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mRNA from alignment at scaffold_1:1240035..1241711-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1689 ID=mRNA_1689|Name=jgi.p|Nanoce1779_2|522236|organism=Nannochloropsis oceanica|type=mRNA|length=1677bp|location=Sequence derived from alignment at scaffold_1:1240035..1241711- (Nannochloropsis oceanica)
ATGGCCCCTCCTCCTCTCGTCACCCCCAAGCAACGTCAGCACTACCTCAA
GCGAGCCCTCGAGACCTTCACGAAAGAGCACTTGGTAGCCTTGCTGTGTG
ACATCGCAAACAACCTGGGCGGGCCCATTTTCGACGAAGCATACGACAGG
TCCTGTATGGACTTATCGAACCGCAAGGTCTTCGTGCGGGGGATCGCCTG
GGGGACGACCAACGACTCGCTGGGAGAGGCCTTATCTGTATTCGGGCCGA
TTCAGGAGGCCGCGGTCATATGTGACCGGGCAACCGGTAAAAGTAAGGGT
TATGCTTTCGTTACCTTCGACCATGGTGAGTCGGCGTTCAGGCTGTTGGA
TTTACCGTTCATCACGATTGATGGCCGTAATGTTCAGTGCTTTCTGGCGT
CTCAACGGGGGGCGGGTACGACTGGGGGTGGAGGGGGAGGGGAGGTCCAC
CCAGCACAGCATACGCACGCCCCGTCGTCGGCCCCGCATCATCACTACGT
AGGCGGAGGAAGAGGTGAGCAAAATGTACATGGCAGCCACCACCACCACC
ATCAGCAGCAGCATTACCCGCCGCATCATCACCGCCACCACCAGCTACCA
CCCCAACAGCTGCAGCAGCACCACCAGCACCACCAGCGTCAGTATTCGCA
CCCGCAAATCGCTCATTCCCCCTCCCTAGCTCCCAGCACTACCCCCTCAT
CCGCCTCCTCCATGAGCCCGTCCCTCTCCTCCTCGTCCTCCTCCACTGCC
GCCACTGCAGCAATCCTGGCGACAGCCGCTCAAGCAGCAGCAGTCCGTGA
GGCGAGTTCAACGCTACCCGGTGGACATACGGGAGGGAGGGCCCTCCCCC
CTCGCGCTCCTCTTGCTTCCACCGCAACCGGAGAAGGGAAGGGGAATGAA
GGTGTGGGTGATTCTACCGAGTCTTCTGTTGCCACTGCCGTTGTCGCTCC
CTCGGAGAGTCGCCGCAAGTCCTTCCCAGGCCCTGATCTAACCCAACTGC
GCGGCGGGCGACATGGAGTGATCGGTGTCCCTCCCTCCCTCCCTCGAGGC
GGCGGAGAAGGAGGAAACCTCACTAACATCTCCCCCTCTTCTTCCTCGTC
ATCGGTGTCGTCGGCCGTGTCCTCGTCGCATTCGTTCTCTTCCTCCCCTG
GACCTCAGGATTTGAATAGCACCGCTGGTAACACCTCCAGTACTAGCACC
ACTGGCAGCGCTAGCACCACCAGCAGCTTCAGCAGCAGCAAGCATTTGCG
TCAAGTTCTGGTGCGTGGAATGGCGCTTGATGCCTCCCATGACGTGCTTC
GAGGTCTCTTTCACGGAGAAGGTGAAGTAGAAGACGCATTCTTCCTCTCA
GATCCCTCTACCCGTGCCCCCATTGGTGCTGCCTTAGTGACCTTCCGCGA
GCCACGCGTTGCCAGTTTGGTCCTTCGCACCCCTTATAGGGATTTGCCTG
AGGGGAGGGTCTGTGAGATCCTGGCCGTGCCTCCCCCAGCCTCCCTCCAA
TCCTCTTTCTCGCCTTCGTCACTCGGAGGAGGAGGAGGAGGAGGAGAGGA
GGAGGGGGGGGGAGAGTGTCTCGCTGTCTTGGGTCAGCAGCTTCAGGCGC
CCTCTTTCGGAATGCCCCAGCCGGCTGCGGGGTTTTATAATGTAGAAGGG
GGTAAGGGGTCGGGATGGCGTCAGTGA
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Coding sequence (CDS) from alignment at scaffold_1:1240035..1241711-

>mRNA_1689 ID=mRNA_1689|Name=jgi.p|Nanoce1779_2|522236|organism=Nannochloropsis oceanica|type=CDS|length=1758bp|location=Sequence derived from alignment at scaffold_1:1240035..1241711- (Nannochloropsis oceanica)
CATTTGCGTCAAGTTCTGGTGCGTGGAATGGCGCTTGATGCCTCCCATGA
CGTGCTTCGAGGTCTCTTTCACGGAGAAGGTGAAGTAGAAGACGCATTCT
TCCTCTCAGATCCCTCTACCCGTGCCCCCATTGGTGCTGCCTTAGTGACC
TTCCGCGAGCCACGCGTTGCCAGTTTGGTCCTTCGCACCCCTTATAGGGA
TTTGCCTGAGGGGAGGGTCTGTGAGATCCTGGCCGTGCCTCCCCCAGCCT
CCCTCCAATCCTCTTTCTCGCCTTCGTCACTCGGAGGAGGAGGAGGAGGA
GGAGAGGAGGAGGGGGGGGGAGAGTGTCTCGCTGTCTTGGGTCAGCAGCT
TCAGGCGCCCTCTTTCGGAATGCCCCAGCCGGCTGCGGGGTTTTATAATG
TAGAAGGGGGTAAGGGGTCGGGATGGCGTCAGTGAATGGCCCCTCCTCCT
CTCGTCACCCCCAAGCAACGTCAGCACTACCTCAAGCGAGCCCTCGAGAC
CTTCACGAAAGAGCACTTGGTAGCCTTGCTGTGTGACATCGCAAACAACC
TGGGCGGGCCCATTTTCGACGAAGCATACGACAGGTCCTGTATGGACTTA
TCGAACCGCAAGGTCTTCGTGCGGGGGATCGCCTGGGGGACGACCAACGA
CTCGCTGGGAGAGGCCTTATCTGTATTCGGGCCGATTCAGGAGGCCGCGG
TCATATGTGACCGGGCAACCGGTAAAAGTAAGGGTTATGCTTTCGTTACC
TTCGACCATGGTGAGTCGGCGTTCAGGCTGTTGGATTTACCGTTCATCAC
GATTGATGGCCGTAATGTTCAGTGCTTTCTGGCGTCTCAACGGGGGGCGG
GTACGACTGGGGGTGGAGGGGGAGGGGAGCATTTGCGTCAAGTTCTGGTG
CGTGGAATGGCGCTTGATGCCTCCCATGACGTGCTTCGAGGTCTCTTTCA
CGGAGAAGGTGAAGTAGAAGACGCATTCTTCCTCTCAGATCCCTCTACCC
GTGCCCCCATTGGTGCTGCCTTAGTGACCTTCCGCGAGCCACGCGTTGCC
AGTTTGGTCCTTCGCACCCCTTATAGGGATTTGCCTGAGGGGAGGGTCTG
TGAGATCCTGGCCGTGCCTCCCCCAGCCTCCCTCCAATCCTCTTTCTCGC
CTTCGTCACTCGGAGGAGGAGGAGGAGGAGGAGAGGAGGAGGGGGGGGGA
GAGTGTCTCGCTGTCTTGGGTCAGCAGCTTCAGGCGCCCTCTTTCGGAAT
GCCCCAGCCGGCTGCGGGGTTTTATAATGTAGAAGGGGGTAAGGGGTCGG
GATGGCGTCAGTGAATGGCCCCTCCTCCTCTCGTCACCCCCAAGCAACGT
CAGCACTACCTCAAGCGAGCCCTCGAGACCTTCACGAAAGAGCACTTGGT
AGCCTTGCTGTGTGACATCGCAAACAACCTGGGCGGGCCCATTTTCGACG
AAGCATACGACAGGTCCTGTATGGACTTATCGAACCGCAAGGTCTTCGTG
CGGGGGATCGCCTGGGGGACGACCAACGACTCGCTGGGAGAGGCCTTATC
TGTATTCGGGCCGATTCAGGAGGCCGCGGTCATATGTGACCGGGCAACCG
GTAAAAGTAAGGGTTATGCTTTCGTTACCTTCGACCATGGTGAGTCGGCG
TTCAGGCTGTTGGATTTACCGTTCATCACGATTGATGGCCGTAATGTTCA
GTGCTTTCTGGCGTCTCAACGGGGGGCGGGTACGACTGGGGGTGGAGGGG
GAGGGGAG
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Synonyms
Publications