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Properties
| Property Name | Value |
|---|
| TranscriptId | 14121 |
| Track | FilteredModels2 |
| ProteinId | 14035 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_1 | supercontig | scaffold_1:1234366..1237296 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_1687 ID=mRNA_1687|Name=jgi.p|Nanoce1779_2|14035|organism=Nannochloropsis oceanica|type=mRNA|length=1932bp
GACCCGCATCATCACCACCTCCATCCTCACGGCCCTCCTCCGCCTTTTGG
CTATGCAGTCTCCCTGGGGGTCCATGCCCCTCCTCCCCCTCCACATAGTC
ATCCGTCCCACCTCTTCCCCCAGCACGTCATAATGCCTCCCGCCCCTCCC
GGAGGCCTGAAAAGCGAAATGGACGACGACAAGGATATAATGGTAAGCGC
CGGCAACGGCGGCGATGGGCACGGCAGTCACGCCCACACCCACCCTAGCT
CTAGTTCAAGCAGCATCAACACCACCATCACCAGCGATGGAGGGCCGCCC
AACCAAGAGGACGGAAAGCTTTTCTTGGGGTGTAAAAAGGAAGGGTGTAA
CGGCATTTTGCTGGTGGGAACGACGACGCGGCATGGGGCGCCGTACCAGT
GTCCCCGGTGCTTGAACAAGCAGAAGTACTGTCAGGATTGTCAGCAGCTT
TACATAAACTTTCGCCGTCATCGGATATTAGGCCATGAGTTGTATGAGTT
CCAGCGGAAGCGACAGGTCCTCATACGTAACAACCACGGTCTCTTCGTTC
CTGCCGATCAGAGTAAAAAGGTCCCCGTTACCATCACCGGCCCCGGCATT
TTCAGCAGCGGCGGCGGCGGCTGCTGCTGCGGCTGCTGGCGTTGAGATGG
GGGGACGACGAGTAAGAGGGGATGGGCGCTCCCGGCGTCCGACTAAGGGT
CGAGGTAAGGGACATGATGAAATTAGCCTTGAGGAGGAGGAGGAAGAGGA
AGGGAATGAGGAAGGGGAGAGGATGAAAGAGGAAGGGGAGATGATGATTT
ATGCGCCGGCGGGCGCGGTGTGGACTGGAGGAAGGGAAGGAGGTAGAGGG
GGGGTTCCTCCTACCCCTGAGGTGGCTGAGGAGTTGGATGACGCGTCAGA
TATTTTGGTCAAGCTGATGCAGGGACAAAGCAGTAGCAATAAGCGCAGCA
AGACGGGCGAACTCACATCTCCAGGTGGAGGGATGAACAAGCCGCCGCTG
CCAAAGCAGCAGCAGCAGCAACAACAACGACAACAACAACCTGTGTGCCA
GCAACAGAAGCAGCAGCAGTTGCAGCAGATGGAGACAGAAACAGGTGCAG
CAGCAGCCGCAACAGGGGCTATTGCATCCATGTCATCCGCCGCCGGCCAT
GTCTCTTCTCCAGGCCAAGCCCAGCCCATCGAGCCCATGTCCCCCGACGG
CCCGAATTCCTCTGCACTGCCCCCCTCCTCCTCTGTTTCCAATGCCTCCT
CCTCCTCCTCCTCCTCCTCCTCCTCTGCCGCTGCTTTCTCCCCCCCTCCT
TCCTTGCAGCCACCCGCCGCGTGGTCCTCGTCCAACTTCCTTGCTTCCTT
CAAGCCTCCCACCCTACTCCCTGCAAACGCGAGTCAGATGCAGCGTCAGC
AGCCACGCTGGGTGAGTGGCGATGCTGCCTCCTTCCTTCCCCCCCCCTTC
TCCTTTAGTTCCAAGACCATGCGCGAAAACGACCCAGTGGCTCCACTAGA
GATCCCTCCTTCCCTTCCTCCCTTGCCTACCCTCGTGGGGAAGGATTTTG
GGCCGCCCTCTACAGCAGCTGCAGCGGCAGCAGGGACGGAGCGGGACGCA
GGGACGCAGACGTCGCCTTCGGGCTCTTCTCCTCCCCCCCCCCCTCCTCC
TCCTCCTGAGCAGCAGCAGCAGCAGGAGGAGTGGTCGTCATCGTCCTGTG
CATCGGGCGCAGCAGCAAGAGCTACTCTGCCAGCGGCGATGGGATCAGGA
GGAGGAGGAGGAGGAGTAGGGAATGGAGGCAGCGTCCCTGTGGAGGTTAA
GAATGTTACCCTTTTTGTTTGAGGGAGGGAGGGATGGAGGGAGGAAGATG
GGAGGACAGAGGGAGGGACGGTTTATTTGTGTACAGGGACACTCTTATTA
TTTGCAAGAGACGAGACAATCGCTTTCAATCC back to topprotein sequence of jgi.p|Nanoce1779_2|14035 >mRNA_1687-protein ID=mRNA_1687-protein|Name=jgi.p|Nanoce1779_2|14035|organism=Nannochloropsis oceanica|type=polypeptide|length=446bp
MSCMSSSGSDRSSYVTTTVSSFLPIRVKRSPLPSPAPAFSAAAAAAAAAA
AGVEMGGRRVRGDGRSRRPTKGRGKGHDEISLEEEEEEEGNEEGERMKEE
GEMMIYAPAGAVWTGGREGGRGGVPPTPEVAEELDDASDILVKLMQGQSS
SNKRSKTGELTSPGGGMNKPPLPKQQQQQQQRQQQPVCQQQKQQQLQQME
TETGAAAAATGAIASMSSAAGHVSSPGQAQPIEPMSPDGPNSSALPPSSS
VSNASSSSSSSSSSAAAFSPPPSLQPPAAWSSSNFLASFKPPTLLPANAS
QMQRQQPRWVSGDAASFLPPPFSFSSKTMRENDPVAPLEIPPSLPPLPTL
VGKDFGPPSTAAAAAAGTERDAGTQTSPSGSSPPPPPPPPPEQQQQQEEW
SSSSCASGAAARATLPAAMGSGGGGGGVGNGGSVPVEVKNVTLFV* back to topmRNA from alignment at scaffold_1:1234366..1237296+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_1687 ID=mRNA_1687|Name=jgi.p|Nanoce1779_2|14035|organism=Nannochloropsis oceanica|type=mRNA|length=2931bp|location=Sequence derived from alignment at scaffold_1:1234366..1237296+ (Nannochloropsis oceanica)
GACCCGCATCATCACCACCTCCATCCTCACGGCCCTCCTCCGCCTTTTGG
CTATGCAGTCTCCCTGGGGGTCCATGCCCCTCCTCCCCCTCCACATAGTC
ATCCGTCCCACCTCTTCCCCCAGCACGTCATAATGCCTCCCGCCCCTCCC
GGAGGCCTGAAAAGCGAAATGGACGACGACAAGGATATAATGGTAAGCGC
CGGCAACGGCGGCGATGGGCACGGCAGTCACGCCCACACCCACCCTAGCT
CTAGTTCAAGCAGCATCAACACCACCATCACCAGCGATGGAGGGCCGCCC
AACCAAGAGGACGGAAAGCTTTTCTTGGGGTGTAAAAAGGAAGGGTGTAA
CGGCATTTTGCTGGTGGGAACGACGACGCGGCATGGGGCGCCGTACCAGT
GTCCCCGGTGCTTGAACAAGCAGAAGTACTGTCAGGATTGTCAGCAGCTT
TACATAAACTTTCGCCGTCATCGGATATTAGGCCATGAGTTGTATGAGTT
CCAGCGGAAGCGACAGGTGCGTGGGGACAGGGAGGGAGGGAGGGAGGGAG
GGAGGGAGGGAAGGAGGGTATGTGGTTGGTTTGTTTTGGGAATAGGTGCG
TTCGGAAGCTTGTCATTTTTTGGGGGGGTTGATTGGAGTGCGTTCCCTCT
GTGTACAGTGCTCGGGTTGGGCCGGGGGAAAAGGCATCTGGGGCAGGTCT
TTCCCCTCCTCCATGGTCGAGGTTGAGGAGTAAGAATCCTGGCTCACGTC
CTTTGTATGTGTGTCACCCTGTCATCCACCCTCTTTTAATCACGGTAGGG
TTACAGATTTGTCTGTCTGTCTGTCTGTCTGTCTGTCTGTGTGTCTGTCT
GTCTGTCTGTCCTGCATCCTGTTTTTTAATCACGGTTGGTCTGGGGTCGA
ATCTGTCGACACGTTTGTCGTTTTAAAACATGTCGTTTGAAAAGGCGGTT
TGGAGAAAGGAGAGCAATGATTAACAGTGCGGTGACACGGTCGTGGGCAG
AGCAGCACCAGCAGAAGAATGTCCTTCGCTGCCCTGACTCTGGTTCACGA
TTGCATGGATTAAATGCAGATGAAGAGGAGGAGAGGGAAGAGAAGGAGGG
GGGGGAGGAGGTGGAGGAAAAGGAGAAGGGCGTCCTCGGAAGAGTAACCC
CCCCCTCTCCCTCCCCCCTCCTCCTCCTCCTCCCCCTACTGCTCTTCTCT
TCTCCTGCAATCAGACTGTGTCAACCTGCCTTCAAAGCTCTGTCTCTCTC
CTCTCCGTCTTTCTCATCTCTCCCACTTTCTCTCTCCTTCCTCCTCCTCT
CCCTCTCCCTCTCTCCCTCTCCCTCTCTCTCCTTTTGTCGTCTCGCTTCG
GTGTGCTCGATGAATCCCCTCTGTGACATAGGTCCTCATACGTAACAACC
ACGGTCTCTTCGTTCCTGCCGATCAGAGTAAAAAGGTCCCCGTTACCATC
ACCGGCCCCGGCATTTTCAGCAGCGGCAGCAGCAGCAGCAGTAGCAGCAG
CAGCAGCAGCAGCAGCAGCAGCCACAGCATTTCCGTCAGCAGCACCAGCG
CAGGTTCAACGTCTTCCCTCCTGGGAGGGGGAGGACGCCAATCCCAGAAG
CAGAAGCAGGCGGCGGCGGCTGCTGCTGCGGCTGCTGGCGTTGAGATGGG
GGGACGACGAGTAAGAGGGGATGGGCGCTCCCGGCGTCCGACTAAGGGTC
GAGGTAAGGGACATGATGAAATTAGCCTTGAGGAGGAGGAGGAAGAGGAA
GGGAATGAGGAAGGGGAGAGGATGAAAGAGGAAGGGGAGATGATGATTTA
TGCGCCGGCGGGCGCGGTGTGGACTGGAGGAAGGGAAGGAGGTAGAGGGG
GGGTTCCTCCTACCCCTGAGGTGGCTGAGGAGTTGGATGACGCGTCAGAT
ATTTTGGTCAAGCTGATGCAGGGACAAAGCAGTAGCAATAAGCGCAGCAA
GACGGGCGAACTCACATCTCCAGGTGGAGGGATGAACAAGCCGCCGCTGC
CAAAGCAGCAGCAGCAGCAACAACAACGACAACAACAACCTGTGTGCCAG
CAACAGAAGCAGCAGCAGTTGCAGCAGATGGAGACAGAAACAGGTGCAGC
AGCAGCCGCAACAGGGGCTATTGCATCCATGTCATCCGCCGCCGGCCATG
TCTCTTCTCCAGGCCAAGCCCAGCCCATCGAGCCCATGTCCCCCGACGGC
CCGAATTCCTCTGCACTGCCCCCCTCCTCCTCTGTTTCCAATGCCTCCTC
CTCCTCCTCCTCCTCCTCCTCCTCTGCCGCTGCTTTCTCCCCCCCTCCTT
CCTTGCAGCCACCCGCCGCGTGGTCCTCGTCCAACTTCCTTGCTTCCTTC
AAGCCTCCCACCCTACTCCCTGCAAACGCGAGTCAGATGCAGCGTCAGCA
GCCACGCTGGGTGAGTGGCGATGCTGCCTCCTTCCTTCCCCCCCCCTTCT
CCTTTAGTTCCAAGACCATGCGCGAAAACGACCCAGTGGCTCCACTAGAG
ATCCCTCCTTCCCTTCCTCCCTTGCCTACCCTCGTGGGGAAGGATTTTGG
GCCGCCCTCTACAGCAGCTGCAGCGGCAGCAGGGACGGAGCGGGACGCAG
GGACGCAGACGTCGCCTTCGGGCTCTTCTCCTCCCCCCCCCCCTCCTCCT
CCTCCTGAGCAGCAGCAGCAGCAGGAGGAGTGGTCGTCATCGTCCTGTGC
ATCGGGCGCAGCAGCAAGAGCTACTCTGCCAGCGGCGATGGGATCAGGAG
GAGGAGGAGGAGGAGTAGGGAATGGAGGCAGCGTCCCTGTGGAGGTTAAG
AATGTTACCCTTTTTGTTTGAGGGAGGGAGGGATGGAGGGAGGAAGATGG
GAGGACAGAGGGAGGGACGGTTTATTTGTGTACAGGGACACTCTTATTAT
TTGCAAGAGACGAGACAATCGCTTTCAATCC back to topCoding sequence (CDS) from alignment at scaffold_1:1234366..1237296+ >mRNA_1687 ID=mRNA_1687|Name=jgi.p|Nanoce1779_2|14035|organism=Nannochloropsis oceanica|type=CDS|length=4014bp|location=Sequence derived from alignment at scaffold_1:1234366..1237296+ (Nannochloropsis oceanica)
ATGAGTTGTATGAGTTCCAGCGGAAGCGACAGGTCCTCATACGTAACAAC
CACGGTCTCTTCGTTCCTGCCGATCAGAGTAAAAAGGTCCCCGTTACCAT
CACCGGCCCCGGCATTTTCAGCAGCGGCGGCGGCGGCTGCTGCTGCGGCT
GCTGGCGTTGAGATGGGGGGACGACGAGTAAGAGGGGATGGGCGCTCCCG
GCGTCCGACTAAGGGTCGAGGTAAGGGACATGATGAAATTAGCCTTGAGG
AGGAGGAGGAAGAGGAAGGGAATGAGGAAGGGGAGAGGATGAAAGAGGAA
GGGGAGATGATGATTTATGCGCCGGCGGGCGCGGTGTGGACTGGAGGAAG
GGAAGGAGGTAGAGGGGGGGTTCCTCCTACCCCTGAGGTGGCTGAGGAGT
TGGATGACGCGTCAGATATTTTGGTCAAGCTGATGCAGGGACAAAGCAGT
AGCAATAAGCGCAGCAAGACGGGCGAACTCACATCTCCAGGTGGAGGGAT
GAACAAGCCGCCGCTGCCAAAGCAGCAGCAGCAGCAACAACAACGACAAC
AACAACCTGTGTGCCAGCAACAGAAGCAGCAGCAGTTGCAGCAGATGGAG
ACAGAAACAGGTGCAGCAGCAGCCGCAACAGGGGCTATTGCATCCATGTC
ATCCGCCGCCGGCCATGTCTCTTCTCCAGGCCAAGCCCAGCCCATCGAGC
CCATGTCCCCCGACGGCCCGAATTCCTCTGCACTGCCCCCCTCCTCCTCT
GTTTCCAATGCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCTGCCGCTGC
TTTCTCCCCCCCTCCTTCCTTGCAGCCACCCGCCGCGTGGTCCTCGTCCA
ACTTCCTTGCTTCCTTCAAGCCTCCCACCCTACTCCCTGCAAACGCGAGT
CAGATGCAGCGTCAGCAGCCACGCTGGGTGAGTGGCGATGCTGCCTCCTT
CCTTCCCCCCCCCTTCTCCTTTAGTTCCAAGACCATGCGCGAAAACGACC
CAGTGGCTCCACTAGAGATCCCTCCTTCCCTTCCTCCCTTGCCTACCCTC
GTGGGGAAGGATTTTGGGCCGCCCTCTACAGCAGCTGCAGCGGCAGCAGG
GACGGAGCGGGACGCAGGGACGCAGACGTCGCCTTCGGGCTCTTCTCCTC
CCCCCCCCCCTCCTCCTCCTCCTGAGCAGCAGCAGCAGCAGGAGGAGTGG
TCGTCATCGTCCTGTGCATCGGGCGCAGCAGCAAGAGCTACTCTGCCAGC
GGCGATGGGATCAGGAGGAGGAGGAGGAGGAGTAGGGAATGGAGGCAGCG
TCCCTGTGGAGGTTAAGAATGTTACCCTTTTTGTTTGAATGAGTTGTATG
AGTTCCAGCGGAAGCGACAGGTCCTCATACGTAACAACCACGGTCTCTTC
GTTCCTGCCGATCAGAGTAAAAAGGTCCCCGTTACCATCACCGGCCCCGG
CATTTTCAGCAGCGGCGGCGGCGGCTGCTGCTGCGGCTGCTGGCGTTGAG
ATGGGGGGACGACGAGTAAGAGGGGATGGGCGCTCCCGGCGTCCGACTAA
GGGTCGAGGTAAGGGACATGATGAAATTAGCCTTGAGGAGGAGGAGGAAG
AGGAAGGGAATGAGGAAGGGGAGAGGATGAAAGAGGAAGGGGAGATGATG
ATTTATGCGCCGGCGGGCGCGGTGTGGACTGGAGGAAGGGAAGGAGGTAG
AGGGGGGGTTCCTCCTACCCCTGAGGTGGCTGAGGAGTTGGATGACGCGT
CAGATATTTTGGTCAAGCTGATGCAGGGACAAAGCAGTAGCAATAAGCGC
AGCAAGACGGGCGAACTCACATCTCCAGGTGGAGGGATGAACAAGCCGCC
GCTGCCAAAGCAGCAGCAGCAGCAACAACAACGACAACAACAACCTGTGT
GCCAGCAACAGAAGCAGCAGCAGTTGCAGCAGATGGAGACAGAAACAGGT
GCAGCAGCAGCCGCAACAGGGGCTATTGCATCCATGTCATCCGCCGCCGG
CCATGTCTCTTCTCCAGGCCAAGCCCAGCCCATCGAGCCCATGTCCCCCG
ACGGCCCGAATTCCTCTGCACTGCCCCCCTCCTCCTCTGTTTCCAATGCC
TCCTCCTCCTCCTCCTCCTCCTCCTCCTCTGCCGCTGCTTTCTCCCCCCC
TCCTTCCTTGCAGCCACCCGCCGCGTGGTCCTCGTCCAACTTCCTTGCTT
CCTTCAAGCCTCCCACCCTACTCCCTGCAAACGCGAGTCAGATGCAGCGT
CAGCAGCCACGCTGGGTGAGTGGCGATGCTGCCTCCTTCCTTCCCCCCCC
CTTCTCCTTTAGTTCCAAGACCATGCGCGAAAACGACCCAGTGGCTCCAC
TAGAGATCCCTCCTTCCCTTCCTCCCTTGCCTACCCTCGTGGGGAAGGAT
TTTGGGCCGCCCTCTACAGCAGCTGCAGCGGCAGCAGGGACGGAGCGGGA
CGCAGGGACGCAGACGTCGCCTTCGGGCTCTTCTCCTCCCCCCCCCCCTC
CTCCTCCTCCTGAGCAGCAGCAGCAGCAGGAGGAGTGGTCGTCATCGTCC
TGTGCATCGGGCGCAGCAGCAAGAGCTACTCTGCCAGCGGCGATGGGATC
AGGAGGAGGAGGAGGAGGAGTAGGGAATGGAGGCAGCGTCCCTGTGGAGG
TTAAGAATGTTACCCTTTTTGTTTGAATGAGTTGTATGAGTTCCAGCGGA
AGCGACAGGTCCTCATACGTAACAACCACGGTCTCTTCGTTCCTGCCGAT
CAGAGTAAAAAGGTCCCCGTTACCATCACCGGCCCCGGCATTTTCAGCAG
CGGCGGCGGCGGCTGCTGCTGCGGCTGCTGGCGTTGAGATGGGGGGACGA
CGAGTAAGAGGGGATGGGCGCTCCCGGCGTCCGACTAAGGGTCGAGGTAA
GGGACATGATGAAATTAGCCTTGAGGAGGAGGAGGAAGAGGAAGGGAATG
AGGAAGGGGAGAGGATGAAAGAGGAAGGGGAGATGATGATTTATGCGCCG
GCGGGCGCGGTGTGGACTGGAGGAAGGGAAGGAGGTAGAGGGGGGGTTCC
TCCTACCCCTGAGGTGGCTGAGGAGTTGGATGACGCGTCAGATATTTTGG
TCAAGCTGATGCAGGGACAAAGCAGTAGCAATAAGCGCAGCAAGACGGGC
GAACTCACATCTCCAGGTGGAGGGATGAACAAGCCGCCGCTGCCAAAGCA
GCAGCAGCAGCAACAACAACGACAACAACAACCTGTGTGCCAGCAACAGA
AGCAGCAGCAGTTGCAGCAGATGGAGACAGAAACAGGTGCAGCAGCAGCC
GCAACAGGGGCTATTGCATCCATGTCATCCGCCGCCGGCCATGTCTCTTC
TCCAGGCCAAGCCCAGCCCATCGAGCCCATGTCCCCCGACGGCCCGAATT
CCTCTGCACTGCCCCCCTCCTCCTCTGTTTCCAATGCCTCCTCCTCCTCC
TCCTCCTCCTCCTCCTCTGCCGCTGCTTTCTCCCCCCCTCCTTCCTTGCA
GCCACCCGCCGCGTGGTCCTCGTCCAACTTCCTTGCTTCCTTCAAGCCTC
CCACCCTACTCCCTGCAAACGCGAGTCAGATGCAGCGTCAGCAGCCACGC
TGGGTGAGTGGCGATGCTGCCTCCTTCCTTCCCCCCCCCTTCTCCTTTAG
TTCCAAGACCATGCGCGAAAACGACCCAGTGGCTCCACTAGAGATCCCTC
CTTCCCTTCCTCCCTTGCCTACCCTCGTGGGGAAGGATTTTGGGCCGCCC
TCTACAGCAGCTGCAGCGGCAGCAGGGACGGAGCGGGACGCAGGGACGCA
GACGTCGCCTTCGGGCTCTTCTCCTCCCCCCCCCCCTCCTCCTCCTCCTG
AGCAGCAGCAGCAGCAGGAGGAGTGGTCGTCATCGTCCTGTGCATCGGGC
GCAGCAGCAAGAGCTACTCTGCCAGCGGCGATGGGATCAGGAGGAGGAGG
AGGAGGAGTAGGGAATGGAGGCAGCGTCCCTGTGGAGGTTAAGAATGTTA
CCCTTTTTGTTTGA back to top
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