jgi.p|Nanoce1779_2|573085, mRNA_1684 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|573085
Unique NamemRNA_1684
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1027
Alignment locationscaffold_1:1228723..1229749 -

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Properties
Property NameValue
TranscriptId573171
TrackFilteredModels2
ProteinId573085
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_1supercontigscaffold_1:1228723..1229749 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|573085gene_1684Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|573085mRNA_1684-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1684CDS_1684Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1684 ID=mRNA_1684|Name=jgi.p|Nanoce1779_2|573085|organism=Nannochloropsis oceanica|type=mRNA|length=1027bp
AGATGCTACAATCACTGCTTCGAACAAAAACGTCCACACCAACCACAACG
TGTCGCCGTGCTTCTGCAGGACAAGTCCCTGCATGCCTGTCTGTCTCCGC
CTTCTCATGGACCGCGATTTCCAGACAGGCTCCAGCCTGCCTGTCTGTCG
CCCCCCACTCCTCCTTAAGCAGCGGCGGCGGAAACAGTCAAAGCCCCTCT
CCACTACCATCGACCCAGAGATCCCGTCGACTTCGCCCCCCCTCAGGCGC
CCGCGGGGCAGGCCGCGCCGTGTACGACTACCTGCTTTTGTTCAAGCCTT
TCAACGTGCTGTGTCAATTTTCGGCACACGAGGGGAAGCGGACGCTTGCG
GACGTGCTGCCGCCCACCACGCCCCGGGATGTTTATCCAGTGGGAAGGTT
GGATTACGATTCCGAAGGTTTTGTATTGCTGACGAATGACACGGCGGTTA
ACCACCGCATGCTGGACCCCGTACACGAACATGAACGGGAGTACCTTGTT
CAAGTCGAAGGAGAGGTGACTGAGGAAGGATTGAGCAAATTAAGAGAAGG
AGGGCTCGATCTCAACCTCGGTCGGGGGAAAACCCATCGTTCCCGACCTT
GTCCCCTCGTTGAGCGTATAATCCTCTCTGAAGGCGAAGAAGCCCCTCCG
GGTATCGAGCCACGGGAACCCCCCATTCGGGCAAGAAAGTTCATTCCCAC
CTCCTGGCTTCGCCTCGGCATGACAGAGGGTAGAAACCGACAAGTGCGTC
GCATGGTGGCCATGGTGGGGTTTCCTTGTTTGCGCTTAGTGCGATGGCGA
GTGGAGAAGCTTGACGTGGCGGGCTTGGGTCCCGGAGAGGTGCGGGTGTT
GAGAAGGGAAGAAACATACGAGAAACTACAACTATGAAGACGGACGAAAA
AAATCAAGGAATGGAAACATCATGACCATCAATAATTTCATGTGGTGCAC
TTTGTTACTCCTCTTCCTTCATTTCAATATCCTCCCTTCCTTGCCTCCCT
CCCTTCCCCTTCCCTCCCTCCCTCCCC
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protein sequence of jgi.p|Nanoce1779_2|573085

>mRNA_1684-protein ID=mRNA_1684-protein|Name=jgi.p|Nanoce1779_2|573085|organism=Nannochloropsis oceanica|type=polypeptide|length=295bp
MLQSLLRTKTSTPTTTCRRASAGQVPACLSVSAFSWTAISRQAPACLSVA
PHSSLSSGGGNSQSPSPLPSTQRSRRLRPPSGARGAGRAVYDYLLLFKPF
NVLCQFSAHEGKRTLADVLPPTTPRDVYPVGRLDYDSEGFVLLTNDTAVN
HRMLDPVHEHEREYLVQVEGEVTEEGLSKLREGGLDLNLGRGKTHRSRPC
PLVERIILSEGEEAPPGIEPREPPIRARKFIPTSWLRLGMTEGRNRQVRR
MVAMVGFPCLRLVRWRVEKLDVAGLGPGEVRVLRREETYEKLQL*
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mRNA from alignment at scaffold_1:1228723..1229749-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1684 ID=mRNA_1684|Name=jgi.p|Nanoce1779_2|573085|organism=Nannochloropsis oceanica|type=mRNA|length=1027bp|location=Sequence derived from alignment at scaffold_1:1228723..1229749- (Nannochloropsis oceanica)
AGATGCTACAATCACTGCTTCGAACAAAAACGTCCACACCAACCACAACG
TGTCGCCGTGCTTCTGCAGGACAAGTCCCTGCATGCCTGTCTGTCTCCGC
CTTCTCATGGACCGCGATTTCCAGACAGGCTCCAGCCTGCCTGTCTGTCG
CCCCCCACTCCTCCTTAAGCAGCGGCGGCGGAAACAGTCAAAGCCCCTCT
CCACTACCATCGACCCAGAGATCCCGTCGACTTCGCCCCCCCTCAGGCGC
CCGCGGGGCAGGCCGCGCCGTGTACGACTACCTGCTTTTGTTCAAGCCTT
TCAACGTGCTGTGTCAATTTTCGGCACACGAGGGGAAGCGGACGCTTGCG
GACGTGCTGCCGCCCACCACGCCCCGGGATGTTTATCCAGTGGGAAGGTT
GGATTACGATTCCGAAGGTTTTGTATTGCTGACGAATGACACGGCGGTTA
ACCACCGCATGCTGGACCCCGTACACGAACATGAACGGGAGTACCTTGTT
CAAGTCGAAGGAGAGGTGACTGAGGAAGGATTGAGCAAATTAAGAGAAGG
AGGGCTCGATCTCAACCTCGGTCGGGGGAAAACCCATCGTTCCCGACCTT
GTCCCCTCGTTGAGCGTATAATCCTCTCTGAAGGCGAAGAAGCCCCTCCG
GGTATCGAGCCACGGGAACCCCCCATTCGGGCAAGAAAGTTCATTCCCAC
CTCCTGGCTTCGCCTCGGCATGACAGAGGGTAGAAACCGACAAGTGCGTC
GCATGGTGGCCATGGTGGGGTTTCCTTGTTTGCGCTTAGTGCGATGGCGA
GTGGAGAAGCTTGACGTGGCGGGCTTGGGTCCCGGAGAGGTGCGGGTGTT
GAGAAGGGAAGAAACATACGAGAAACTACAACTATGAAGACGGACGAAAA
AAATCAAGGAATGGAAACATCATGACCATCAATAATTTCATGTGGTGCAC
TTTGTTACTCCTCTTCCTTCATTTCAATATCCTCCCTTCCTTGCCTCCCT
CCCTTCCCCTTCCCTCCCTCCCTCCCC
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Coding sequence (CDS) from alignment at scaffold_1:1228723..1229749-

>mRNA_1684 ID=mRNA_1684|Name=jgi.p|Nanoce1779_2|573085|organism=Nannochloropsis oceanica|type=CDS|length=885bp|location=Sequence derived from alignment at scaffold_1:1228723..1229749- (Nannochloropsis oceanica)
ATGCTACAATCACTGCTTCGAACAAAAACGTCCACACCAACCACAACGTG
TCGCCGTGCTTCTGCAGGACAAGTCCCTGCATGCCTGTCTGTCTCCGCCT
TCTCATGGACCGCGATTTCCAGACAGGCTCCAGCCTGCCTGTCTGTCGCC
CCCCACTCCTCCTTAAGCAGCGGCGGCGGAAACAGTCAAAGCCCCTCTCC
ACTACCATCGACCCAGAGATCCCGTCGACTTCGCCCCCCCTCAGGCGCCC
GCGGGGCAGGCCGCGCCGTGTACGACTACCTGCTTTTGTTCAAGCCTTTC
AACGTGCTGTGTCAATTTTCGGCACACGAGGGGAAGCGGACGCTTGCGGA
CGTGCTGCCGCCCACCACGCCCCGGGATGTTTATCCAGTGGGAAGGTTGG
ATTACGATTCCGAAGGTTTTGTATTGCTGACGAATGACACGGCGGTTAAC
CACCGCATGCTGGACCCCGTACACGAACATGAACGGGAGTACCTTGTTCA
AGTCGAAGGAGAGGTGACTGAGGAAGGATTGAGCAAATTAAGAGAAGGAG
GGCTCGATCTCAACCTCGGTCGGGGGAAAACCCATCGTTCCCGACCTTGT
CCCCTCGTTGAGCGTATAATCCTCTCTGAAGGCGAAGAAGCCCCTCCGGG
TATCGAGCCACGGGAACCCCCCATTCGGGCAAGAAAGTTCATTCCCACCT
CCTGGCTTCGCCTCGGCATGACAGAGGGTAGAAACCGACAAGTGCGTCGC
ATGGTGGCCATGGTGGGGTTTCCTTGTTTGCGCTTAGTGCGATGGCGAGT
GGAGAAGCTTGACGTGGCGGGCTTGGGTCCCGGAGAGGTGCGGGTGTTGA
GAAGGGAAGAAACATACGAGAAACTACAACTATGA
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Synonyms
Publications