jgi.p|Nanoce1779_2|573084, mRNA_1683 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|573084
Unique Name	mRNA_1683
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1140
Alignment location	scaffold_1:1227159..1228726 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	573170
Track	FilteredModels2
ProteinId	573084

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_1	supercontig	scaffold_1:1227159..1228726 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|573084	gene_1683	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|573084	mRNA_1683-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_1683	CDS_1683	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_1:1227159..1228726+
coding sequence from alignment at scaffold_1:1227159..1228726+

mRNA sequence

>mRNA_1683 ID=mRNA_1683|Name=jgi.p|Nanoce1779_2|573084|organism=Nannochloropsis oceanica|type=mRNA|length=1140bp
ACAGCACCTCATCGCGACCATCACTATGGAGGGAAGCAGCACCGGTCGGG
TTGTCGACGTCATGTCCAAGGCGCAATGGGATGCCTTGCTCAAAGATGGC
ATCCCTGCCGTTGCCTTCTTCTGGGCCGACTGGCACGAACCATCCAAGCT
TCAAGGGCAAATGGACTTAGTTTTCACGCACCTCGCCGCTCTTCACCCCT
CTCTCCACTTTTTCCGGGTGGAGGCCGAGGCCGTACCAGACGTCTCAGTC
ATCTTTAGCATAGCCGTCGTTCCCACCTTCGTCTTTCTCCGGGAAGGCAA
GATTACAGACAAACAAGAAGGAGCACACTCTGCCGAGCTAGCTAAGAAAG
TCCAGGCTTTTGCCGCAGCAGCTGCTTCCTTGCCACCCCCCACTTCCGCC
GGTGTCGACGCTTCCATACAGCAGCAGCAGCAGCAGCAGCAACCTCTCAC
TGGCACGGACGGCAGCCTTGAGAACCGTCTCAAGCGGTTAATCACCCAAG
CTCCCGTGGTGGTCTTTATGAAGGGCTCTCCCTCAAACCCTCGTTGCGGC
TTCTCCCGCTCGCTTGTCGAGCTGCTTAAATCTGAACAAATCGCCTTTGC
CTCTTTCGACATTTTGGAAGACAATGAGGTGAGACAAGGGTTGAAAGTCT
ACTCGGACTGGAAGACCTACCCTCAGCTTTACGTCAACGGCGAGCTCGTA
GGTGGGTTAGACATTGTGAAAGAAATGGTGGTGGAGGGAGGGAACTCGGG
TCGCCTCAAGGAAGAGCTGGGCATTAAGGACGTCCCTCTTTCCTCCGTTC
CCTCCGCCTCTTCTGCCCCCTCCTCCGCCCCCTCCCTCGAAACCCGCCTC
ACGGCGCTTATCAACAAGGCCCCAGTCATGCTCTTTATGAAAGGAGATCC
CGCGACACCCAGGTGTGGGTTTAGCAACCAGATGGTATCGATTTTGCAAA
AAGCAGGCGTGGCCTTTGATACCTTCGACATCCTTAGCGACGAGGAAGTG
AGGCAAGGGTTGAAGAAGCTCTCGCAGTGGCCGACCTATCCCCAGTTGTA
CGTGAAAGGGGAATTGATCGGAGGGTTGGACATTGTGAAGGAACTGCAGG
AGACGGGGGAGTTAGAGAGTGCCTTGAAGGGTTAGAGGGG

protein sequence of jgi.p|Nanoce1779_2|573084

>mRNA_1683-protein ID=mRNA_1683-protein|Name=jgi.p|Nanoce1779_2|573084|organism=Nannochloropsis oceanica|type=polypeptide|length=370bp
MEGSSTGRVVDVMSKAQWDALLKDGIPAVAFFWADWHEPSKLQGQMDLVF
THLAALHPSLHFFRVEAEAVPDVSVIFSIAVVPTFVFLREGKITDKQEGA
HSAELAKKVQAFAAAAASLPPPTSAGVDASIQQQQQQQQPLTGTDGSLEN
RLKRLITQAPVVVFMKGSPSNPRCGFSRSLVELLKSEQIAFASFDILEDN
EVRQGLKVYSDWKTYPQLYVNGELVGGLDIVKEMVVEGGNSGRLKEELGI
KDVPLSSVPSASSAPSSAPSLETRLTALINKAPVMLFMKGDPATPRCGFS
NQMVSILQKAGVAFDTFDILSDEEVRQGLKKLSQWPTYPQLYVKGELIGG
LDIVKELQETGELESALKG*

mRNA from alignment at scaffold_1:1227159..1228726+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_1683 ID=mRNA_1683|Name=jgi.p|Nanoce1779_2|573084|organism=Nannochloropsis oceanica|type=mRNA|length=1568bp|location=Sequence derived from alignment at scaffold_1:1227159..1228726+ (Nannochloropsis oceanica)
ACAGCACCTCATCGCGACCATCACTATGGAGGGAAGCAGCACCGGTCGGG
TTGTCGACGTCATGTCCAAGGCGCAATGGGATGCCTTGCTCAAAGGTAAA
GTTTTGATGGTGATGGTGATGACGACGATGCTTGTCCCCATATAGAACAA
ATTGCACTGGGTGCCTCTTACTGGCAGCGAAGCGCCCTTTCAAAGTCCCA
CGCCCGTAGCCACACATACTATCTACATCTGTGAGTATCGCGATGCCTTT
CCATGGTCGTACTAGTCCTCCACAAGCACCATAATCCCCATCCACTAGCA
GCACAGCACATACATGCACTACAGCGTGATAGTACCATTCACAGGAGTCA
AGCAGTCGAGCGTTATCTCGGCATGACATGGTAGACGCGTTATGCTTCTG
TTGGGCGTAGTTGATGCTACTGCTATCATTTTTTGTGTGTAAAAATGGCA
CTTAACCCCCCTAACTTTTCAGCATTTTTTTCGCACCCATCCTTCTAACC
CTATACCATCTCCACCACACAAGATGGCATCCCTGCCGTTGCCTTCTTCT
GGGCCGACTGGCACGAACCATCCAAGCTTCAAGGGCAAATGGACTTAGTT
TTCACGCACCTCGCCGCTCTTCACCCCTCTCTCCACTTTTTCCGGGTGGA
GGCCGAGGCCGTACCAGACGTCTCAGTCATCTTTAGCATAGCCGTCGTTC
CCACCTTCGTCTTTCTCCGGGAAGGCAAGATTACAGACAAACAAGAAGGA
GCACACTCTGCCGAGCTAGCTAAGAAAGTCCAGGCTTTTGCCGCAGCAGC
TGCTTCCTTGCCACCCCCCACTTCCGCCGGTGTCGACGCTTCCATACAGC
AGCAGCAGCAGCAGCAGCAACCTCTCACTGGCACGGACGGCAGCCTTGAG
AACCGTCTCAAGCGGTTAATCACCCAAGCTCCCGTGGTGGTCTTTATGAA
GGGCTCTCCCTCAAACCCTCGTTGCGGCTTCTCCCGCTCGCTTGTCGAGC
TGCTTAAATCTGAACAAATCGCCTTTGCCTCTTTCGACATTTTGGAAGAC
AATGAGGTGAGACAAGGGTTGAAAGTCTACTCGGACTGGAAGACCTACCC
TCAGCTTTACGTCAACGGCGAGCTCGTAGGTGGGTTAGACATTGTGAAAG
AAATGGTGGTGGAGGGAGGGAACTCGGGTCGCCTCAAGGAAGAGCTGGGC
ATTAAGGACGTCCCTCTTTCCTCCGTTCCCTCCGCCTCTTCTGCCCCCTC
CTCCGCCCCCTCCCTCGAAACCCGCCTCACGGCGCTTATCAACAAGGCCC
CAGTCATGCTCTTTATGAAAGGAGATCCCGCGACACCCAGGTGTGGGTTT
AGCAACCAGATGGTATCGATTTTGCAAAAAGCAGGCGTGGCCTTTGATAC
CTTCGACATCCTTAGCGACGAGGAAGTGAGGCAAGGGTTGAAGAAGCTCT
CGCAGTGGCCGACCTATCCCCAGTTGTACGTGAAAGGGGAATTGATCGGA
GGGTTGGACATTGTGAAGGAACTGCAGGAGACGGGGGAGTTAGAGAGTGC
CTTGAAGGGTTAGAGGGG

Coding sequence (CDS) from alignment at scaffold_1:1227159..1228726+

>mRNA_1683 ID=mRNA_1683|Name=jgi.p|Nanoce1779_2|573084|organism=Nannochloropsis oceanica|type=CDS|length=2220bp|location=Sequence derived from alignment at scaffold_1:1227159..1228726+ (Nannochloropsis oceanica)
ATGGAGGGAAGCAGCACCGGTCGGGTTGTCGACGTCATGTCCAAGGCGCA
ATGGGATGCCTTGCTCAAAGATGGCATCCCTGCCGTTGCCTTCTTCTGGG
CCGACTGGCACGAACCATCCAAGCTTCAAGGGCAAATGGACTTAGTTTTC
ACGCACCTCGCCGCTCTTCACCCCTCTCTCCACTTTTTCCGGGTGGAGGC
CGAGGCCGTACCAGACGTCTCAGTCATCTTTAGCATAGCCGTCGTTCCCA
CCTTCGTCTTTCTCCGGGAAGGCAAGATTACAGACAAACAAGAAGGAGCA
CACTCTGCCGAGCTAGCTAAGAAAGTCCAGGCTTTTGCCGCAGCAGCTGC
TTCCTTGCCACCCCCCACTTCCGCCGGTGTCGACGCTTCCATACAGCAGC
AGCAGCAGCAGCAGCAACCTCTCACTGGCACGGACGGCAGCCTTGAGAAC
CGTCTCAAGCGGTTAATCACCCAAGCTCCCGTGGTGGTCTTTATGAAGGG
CTCTCCCTCAAACCCTCGTTGCGGCTTCTCCCGCTCGCTTGTCGAGCTGC
TTAAATCTGAACAAATCGCCTTTGCCTCTTTCGACATTTTGGAAGACAAT
GAGGTGAGACAAGGGTTGAAAGTCTACTCGGACTGGAAGACCTACCCTCA
GCTTTACGTCAACGGCGAGCTCGTAGGTGGGTTAGACATTGTGAAAGAAA
TGGTGGTGGAGGGAGGGAACTCGGGTCGCCTCAAGGAAGAGCTGGGCATT
AAGGACGTCCCTCTTTCCTCCGTTCCCTCCGCCTCTTCTGCCCCCTCCTC
CGCCCCCTCCCTCGAAACCCGCCTCACGGCGCTTATCAACAAGGCCCCAG
TCATGCTCTTTATGAAAGGAGATCCCGCGACACCCAGGTGTGGGTTTAGC
AACCAGATGGTATCGATTTTGCAAAAAGCAGGCGTGGCCTTTGATACCTT
CGACATCCTTAGCGACGAGGAAGTGAGGCAAGGGTTGAAGAAGCTCTCGC
AGTGGCCGACCTATCCCCAGTTGTACGTGAAAGGGGAATTGATCGGAGGG
TTGGACATTGTGAAGGAACTGCAGGAGACGGGGGAGTTAGAGAGTGCCTT
GAAGGGTTAGATGGAGGGAAGCAGCACCGGTCGGGTTGTCGACGTCATGT
CCAAGGCGCAATGGGATGCCTTGCTCAAAGATGGCATCCCTGCCGTTGCC
TTCTTCTGGGCCGACTGGCACGAACCATCCAAGCTTCAAGGGCAAATGGA
CTTAGTTTTCACGCACCTCGCCGCTCTTCACCCCTCTCTCCACTTTTTCC
GGGTGGAGGCCGAGGCCGTACCAGACGTCTCAGTCATCTTTAGCATAGCC
GTCGTTCCCACCTTCGTCTTTCTCCGGGAAGGCAAGATTACAGACAAACA
AGAAGGAGCACACTCTGCCGAGCTAGCTAAGAAAGTCCAGGCTTTTGCCG
CAGCAGCTGCTTCCTTGCCACCCCCCACTTCCGCCGGTGTCGACGCTTCC
ATACAGCAGCAGCAGCAGCAGCAGCAACCTCTCACTGGCACGGACGGCAG
CCTTGAGAACCGTCTCAAGCGGTTAATCACCCAAGCTCCCGTGGTGGTCT
TTATGAAGGGCTCTCCCTCAAACCCTCGTTGCGGCTTCTCCCGCTCGCTT
GTCGAGCTGCTTAAATCTGAACAAATCGCCTTTGCCTCTTTCGACATTTT
GGAAGACAATGAGGTGAGACAAGGGTTGAAAGTCTACTCGGACTGGAAGA
CCTACCCTCAGCTTTACGTCAACGGCGAGCTCGTAGGTGGGTTAGACATT
GTGAAAGAAATGGTGGTGGAGGGAGGGAACTCGGGTCGCCTCAAGGAAGA
GCTGGGCATTAAGGACGTCCCTCTTTCCTCCGTTCCCTCCGCCTCTTCTG
CCCCCTCCTCCGCCCCCTCCCTCGAAACCCGCCTCACGGCGCTTATCAAC
AAGGCCCCAGTCATGCTCTTTATGAAAGGAGATCCCGCGACACCCAGGTG
TGGGTTTAGCAACCAGATGGTATCGATTTTGCAAAAAGCAGGCGTGGCCT
TTGATACCTTCGACATCCTTAGCGACGAGGAAGTGAGGCAAGGGTTGAAG
AAGCTCTCGCAGTGGCCGACCTATCCCCAGTTGTACGTGAAAGGGGAATT
GATCGGAGGGTTGGACATTGTGAAGGAACTGCAGGAGACGGGGGAGTTAG
AGAGTGCCTTGAAGGGTTAG

Synonyms

Publications