jgi.p|Nanoce1779_2|626985, mRNA_1682 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|626985
Unique NamemRNA_1682
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length900
Alignment locationscaffold_1:1224222..1225512 +

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Properties
Property NameValue
TranscriptId627071
TrackFilteredModels2
ProteinId626985
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_1supercontigscaffold_1:1224222..1225512 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|626985gene_1682Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|626985mRNA_1682-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1682CDS_1682Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1682 ID=mRNA_1682|Name=jgi.p|Nanoce1779_2|626985|organism=Nannochloropsis oceanica|type=mRNA|length=900bp
CAGGCACTCGTCGTCATCCTTGTCGTCAAGACTAGCAAGCAAAGCCCAGC
ACTTTCTTTTTTGCTTAACGCTTGCGGTCACCCCCTTTCCCTCGCCCCGT
CAAACCCAACAACCAGTCCTGCCTCCATCATTACCACAACGCAAGCATGT
CAATCGCTAACATGGGCACCGCCCTGTCGGAAGAGGAGTTCCAGCAGTTG
CAGGACGTGGTGGCCTCGGCGAGTGACGACACCACCACGCCGCAGCTCGC
CCTGTCCTTCTTCAAAGAACGAGAGACGGGCAAAGGCAACCGGAAAGCCC
ACCTTTCCGCCTCTCAACTCTCCCATCTCATCTCACTTACTACCTCCTTT
GAGAGCAAGAAGTCTCTCGTTGTCCTGCTCGCACCCTACCTCTGCGCCGA
TGCCTCCAACTTCAAGGCCATCGTCGATCTTTTCCCCAGCATATCAGACC
GCACGGAAATCAAGAATTTCTTCATGGCCAACAACCCCGCCAAACTGGCA
GGTGATCCATCAGCATCCTCCATCCGCACCGACCCTGGCTCTCTCATCCC
GGCAGCTAGTGCTGCCTCTGCCGCTACGAACATCAGTGCCAGCAACAACG
GCAGCAACAACATCTTTCCTATGCCACAGCCACGTCGACGAGAGGACCTT
CAGCAGCAGCAGCAGCAGCAACAACAGCAGCAGCAGCAGCAGCCAATCAC
CCCCTTGAGTGTGACCTCGGGTATGATTCAGGCACCTGAAGTGATGGGCT
CGCCGATGGATTTAAGCAGCAGCAGCGACGACGAAAGCAGCAGAGATAGC
CGCCGGGGGGAAGGGAGCGATGATGGCAGCAGTTGTAATGGTGGGGAGAG
CCGGGGAGCGAGCACACTCAATTCGCAGGAGGACTTGGAAGAGCTAGGGG
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protein sequence of jgi.p|Nanoce1779_2|626985

>mRNA_1682-protein ID=mRNA_1682-protein|Name=jgi.p|Nanoce1779_2|626985|organism=Nannochloropsis oceanica|type=polypeptide|length=251bp
MSIANMGTALSEEEFQQLQDVVASASDDTTTPQLALSFFKERETGKGNRK
AHLSASQLSHLISLTTSFESKKSLVVLLAPYLCADASNFKAIVDLFPSIS
DRTEIKNFFMANNPAKLAGDPSASSIRTDPGSLIPAASAASAATNISASN
NGSNNIFPMPQPRRREDLQQQQQQQQQQQQQQPITPLSVTSGMIQAPEVM
GSPMDLSSSSDDESSRDSRRGEGSDDGSSCNGGESRGASTLNSQEDLEEL
G
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mRNA from alignment at scaffold_1:1224222..1225512+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1682 ID=mRNA_1682|Name=jgi.p|Nanoce1779_2|626985|organism=Nannochloropsis oceanica|type=mRNA|length=1291bp|location=Sequence derived from alignment at scaffold_1:1224222..1225512+ (Nannochloropsis oceanica)
CAGGCACTCGTCGTCATCCTTGTCGTCAAGACTAGCAAGCAAAGCCCAGC
ACTTTCTTTTTTGCTTAACGCTTGCGGTCACCCCCTTTCCCTCGCCCCGT
CAAACCCAACAACCAGTCCTGCCTCCATCATTACCACAACGCAAGCATGT
CAATCGCTAACATGGGCACCGCCCTGTCGGAAGAGGAGTTCCAGCAGTTG
CAGGACGTGGTGGCCTCGGCGAGGTAAGACAGTGTCCGGCGTGCTTTTTA
ATCACCGAGCTTGGTCCTCTGTCTCGGGAGCGGCAATGAGGCATGACCAT
CTCTGACCTTGAATTGGCAATGTACAACCTCGTTTCCGTCGCAAACACCT
TCAATGCTCCTCCACATCTCTCTCCCGCCTTTCACCCTCCCTTATTCCCT
CAACCTGATTAACTCTCTCGTTACACCACAGTGACGACACCACCACGCCG
CAGCTCGCCCTGTCCTTCTTCAAAGAACGAGAGACGGGCAAAGGCAACCG
GAAAGCCCACCTTTCCGCCTCTCAACTCTCCCATCTCATCTCACTTACTA
CCTCCTTTGAGAGCAAGAAGTCTCTCGTTGTCCTGCTCGCACCCTACCTC
TGCGCCGATGCCTCCAACTTCAAGGCCATCGTCGATCTTTTCCCCAGCAT
ATCAGACGTAAGTTCTGTCGTTGTACCTTGCGGCATGTTGGCGTAGTGCT
ATCCTTGTGTTCATTCACGTAACTTCTTGAGAAGGGACGGACTGCCCTGC
AAACTCCAGTGGTAGCTGCAACCCTCCACCGTAAATCTACACTCTTCTTC
ATTTATTTACCACCACCCACCACGCACCAACAATACACAGCGCACGGAAA
TCAAGAATTTCTTCATGGCCAACAACCCCGCCAAACTGGCAGGTGATCCA
TCAGCATCCTCCATCCGCACCGACCCTGGCTCTCTCATCCCGGCAGCTAG
TGCTGCCTCTGCCGCTACGAACATCAGTGCCAGCAACAACGGCAGCAACA
ACATCTTTCCTATGCCACAGCCACGTCGACGAGAGGACCTTCAGCAGCAG
CAGCAGCAGCAACAACAGCAGCAGCAGCAGCAGCCAATCACCCCCTTGAG
TGTGACCTCGGGTATGATTCAGGCACCTGAAGTGATGGGCTCGCCGATGG
ATTTAAGCAGCAGCAGCGACGACGAAAGCAGCAGAGATAGCCGCCGGGGG
GAAGGGAGCGATGATGGCAGCAGTTGTAATGGTGGGGAGAGCCGGGGAGC
GAGCACACTCAATTCGCAGGAGGACTTGGAAGAGCTAGGGG
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Coding sequence (CDS) from alignment at scaffold_1:1224222..1225512+

>mRNA_1682 ID=mRNA_1682|Name=jgi.p|Nanoce1779_2|626985|organism=Nannochloropsis oceanica|type=CDS|length=2259bp|location=Sequence derived from alignment at scaffold_1:1224222..1225512+ (Nannochloropsis oceanica)
ATGTCAATCGCTAACATGGGCACCGCCCTGTCGGAAGAGGAGTTCCAGCA
GTTGCAGGACGTGGTGGCCTCGGCGAGTGACGACACCACCACGCCGCAGC
TCGCCCTGTCCTTCTTCAAAGAACGAGAGACGGGCAAAGGCAACCGGAAA
GCCCACCTTTCCGCCTCTCAACTCTCCCATCTCATCTCACTTACTACCTC
CTTTGAGAGCAAGAAGTCTCTCGTTGTCCTGCTCGCACCCTACCTCTGCG
CCGATGCCTCCAACTTCAAGGCCATCGTCGATCTTTTCCCCAGCATATCA
GACCGCACGGAAATCAAGAATTTCTTCATGGCCAACAACCCCGCCAAACT
GGCAGGTGATCCATCAGCATCCTCCATCCGCACCGACCCTGGCTCTCTCA
TCCCGGCAGCTAGTGCTGCCTCTGCCGCTACGAACATCAGTGCCAGCAAC
AACGGCAGCAACAACATCTTTCCTATGCCACAGCCACGTCGACGAGAGGA
CCTTCAGCAGCAGCAGCAGCAGCAACAACAGCAGCAGCAGCAGCAGCCAA
TCACCCCCTTGAGTGTGACCTCGGGTATGATTCAGGCACCTGAAGTGATG
GGCTCGCCGATGGATTTAAGCAGCAGCAGCGACGACGAAAGCAGCAGAGA
TAGCCGCCGGGGGGAAGGGAGCGATGATGGCAGCAGTTGTAATGGTGGGG
AGAGCCGGGGAGCGAGCACACTCAATTCGCAGGAGGACTTGGAAGAGCTA
GGGATGTCAATCGCTAACATGGGCACCGCCCTGTCGGAAGAGGAGTTCCA
GCAGTTGCAGGACGTGGTGGCCTCGGCGAGTGACGACACCACCACGCCGC
AGCTCGCCCTGTCCTTCTTCAAAGAACGAGAGACGGGCAAAGGCAACCGG
AAAGCCCACCTTTCCGCCTCTCAACTCTCCCATCTCATCTCACTTACTAC
CTCCTTTGAGAGCAAGAAGTCTCTCGTTGTCCTGCTCGCACCCTACCTCT
GCGCCGATGCCTCCAACTTCAAGGCCATCGTCGATCTTTTCCCCAGCATA
TCAGACCGCACGGAAATCAAGAATTTCTTCATGGCCAACAACCCCGCCAA
ACTGGCAGGTGATCCATCAGCATCCTCCATCCGCACCGACCCTGGCTCTC
TCATCCCGGCAGCTAGTGCTGCCTCTGCCGCTACGAACATCAGTGCCAGC
AACAACGGCAGCAACAACATCTTTCCTATGCCACAGCCACGTCGACGAGA
GGACCTTCAGCAGCAGCAGCAGCAGCAACAACAGCAGCAGCAGCAGCAGC
CAATCACCCCCTTGAGTGTGACCTCGGGTATGATTCAGGCACCTGAAGTG
ATGGGCTCGCCGATGGATTTAAGCAGCAGCAGCGACGACGAAAGCAGCAG
AGATAGCCGCCGGGGGGAAGGGAGCGATGATGGCAGCAGTTGTAATGGTG
GGGAGAGCCGGGGAGCGAGCACACTCAATTCGCAGGAGGACTTGGAAGAG
CTAGGGATGTCAATCGCTAACATGGGCACCGCCCTGTCGGAAGAGGAGTT
CCAGCAGTTGCAGGACGTGGTGGCCTCGGCGAGTGACGACACCACCACGC
CGCAGCTCGCCCTGTCCTTCTTCAAAGAACGAGAGACGGGCAAAGGCAAC
CGGAAAGCCCACCTTTCCGCCTCTCAACTCTCCCATCTCATCTCACTTAC
TACCTCCTTTGAGAGCAAGAAGTCTCTCGTTGTCCTGCTCGCACCCTACC
TCTGCGCCGATGCCTCCAACTTCAAGGCCATCGTCGATCTTTTCCCCAGC
ATATCAGACCGCACGGAAATCAAGAATTTCTTCATGGCCAACAACCCCGC
CAAACTGGCAGGTGATCCATCAGCATCCTCCATCCGCACCGACCCTGGCT
CTCTCATCCCGGCAGCTAGTGCTGCCTCTGCCGCTACGAACATCAGTGCC
AGCAACAACGGCAGCAACAACATCTTTCCTATGCCACAGCCACGTCGACG
AGAGGACCTTCAGCAGCAGCAGCAGCAGCAACAACAGCAGCAGCAGCAGC
AGCCAATCACCCCCTTGAGTGTGACCTCGGGTATGATTCAGGCACCTGAA
GTGATGGGCTCGCCGATGGATTTAAGCAGCAGCAGCGACGACGAAAGCAG
CAGAGATAGCCGCCGGGGGGAAGGGAGCGATGATGGCAGCAGTTGTAATG
GTGGGGAGAGCCGGGGAGCGAGCACACTCAATTCGCAGGAGGACTTGGAA
GAGCTAGGG
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Synonyms
Publications