jgi.p|Nanoce1779_2|573074, mRNA_1681 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|573074
Unique NamemRNA_1681
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length759
Alignment locationscaffold_1:1223117..1223985 -

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Properties
Property NameValue
TranscriptId573160
TrackFilteredModels2
ProteinId573074
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_1supercontigscaffold_1:1223117..1223985 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|573074gene_1681Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|573074mRNA_1681-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1681CDS_1681Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1681 ID=mRNA_1681|Name=jgi.p|Nanoce1779_2|573074|organism=Nannochloropsis oceanica|type=mRNA|length=759bp
GAATCAGAAAAAGTGGAAGTATGTAATAGGTAGTGGAAGTATTGTATGTA
AAGGGAGCATGATCATTTTTGTGGATGCGGAAAGAAAGATTTTCGCTAAA
GGTAGGCAACTTAGAAAGCATACGAGACAAGAGTATGCAGCAATATCACT
ATGAAAAACCGGGGGGAAATACTACTACTCTTTATATTTATTTGTCTTTA
CATGTCTTCACTTGGTCAGTTCCCCCGACCCATTTATCCCTCACCCTGCG
AGCACGATCCCCCGCCGTTTCCCTCTTCGAGTTTCCTCGTTCCCGCCGCC
GCTGCCTCCTGCTGCTCACGTATCCTGCTTGACCGTCTTACCCCACCAAC
CGACACACTGCCGATGGCAGGTCGGGTACTGCTGGGGGAACGAATGCCAA
GCGCCCCCAGGATGAGACGAGAGGGCACGGCAGTGTCGCCCTTGGGGCGT
GGCGGGATAGCCAGTCCCGCTGCTAATGCCTGTTGCTGGACCGATGCCGC
AGCCCTTTTCAGACTCTGTGCCGTCACCCCTGTCGGCGCATGGACTTGCC
GCAACGCACGATTAGCTACCGGGATAGAATAGAACATGGCCACCGCACAA
GCATCATGCGGTGGCAACCACGTGATGAGTGCCCCGACATCCGTCCATGG
ACTGACTAGCACCTCCCGCTCTGTGGTCGAGGAAGAGGATGGGGGAAAGC
CCCAGAGATAGAGGCCATGGGCCAAGATGTCCTCCGGGGGAAGGTCGCGA
ACCACGTCT
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protein sequence of jgi.p|Nanoce1779_2|573074

>mRNA_1681-protein ID=mRNA_1681-protein|Name=jgi.p|Nanoce1779_2|573074|organism=Nannochloropsis oceanica|type=polypeptide|length=142bp
MKNRGEILLLFIFICLYMSSLGQFPRPIYPSPCEHDPPPFPSSSFLVPAA
AASCCSRILLDRLTPPTDTLPMAGRVLLGERMPSAPRMRREGTAVSPLGR
GGIASPAANACCWTDAAALFRLCAVTPVGAWTCRNARLATGI
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mRNA from alignment at scaffold_1:1223117..1223985-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1681 ID=mRNA_1681|Name=jgi.p|Nanoce1779_2|573074|organism=Nannochloropsis oceanica|type=mRNA|length=869bp|location=Sequence derived from alignment at scaffold_1:1223117..1223985- (Nannochloropsis oceanica)
GAATCAGAAAAAGTGGAAGTATGTAATAGGTAGTGGAAGTATTGTATGTA
AAGGGAGCATGATCATTTTTGTGGATGCGGAAAGAAAGATTTTCGCTAAA
GGTAGGCAACTTAGAAAGCATACGAGACAAGAGTATGCAGCAATATCACT
ATGAAAAACCGGGGGGAAATACTACTACTCTTTATATTTATTTGTCTTTA
CATGTCTTCACTTGGTCAGTTCCCCCGACCCATTTATCCCTCACCCTGCG
AGCACGATCCCCCGCCGTTTCCCTCTTCGAGTTTCCTCGTTCCCGCCGCC
GCTGCCTCCTGCTGCTCACGTATCCTGCTTGACCGTCTTACCCCACCAAC
CGACACACTGCCGATGGCAGGTCGGGTACTGCTGGGGGAACGAATGCCAA
GCGCCCCCAGGATGAGACGAGAGGGCACGGCAGTGTCGCCCTTGGGGCGT
GGCGGGATAGCCAGTCCCGCTGTCGACGCGTATGTGGGACTGTTGGTACT
TTCGACATTTACAGAATATTTTCATTTGACTTCATGTCTTTCCTCCAGTC
ATCTTTCCTCACTTTTCAATTCATCTTACCTGCTAATGCCTGTTGCTGGA
CCGATGCCGCAGCCCTTTTCAGACTCTGTGCCGTCACCCCTGTCGGCGCA
TGGACTTGCCGCAACGCACGATTAGCTACCGGGATAGAATAGAACATGGC
CACCGCACAAGCATCATGCGGTGGCAACCACGTGATGAGTGCCCCGACAT
CCGTCCATGGACTGACTAGCACCTCCCGCTCTGTGGTCGAGGAAGAGGAT
GGGGGAAAGCCCCAGAGATAGAGGCCATGGGCCAAGATGTCCTCCGGGGG
AAGGTCGCGAACCACGTCT
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Coding sequence (CDS) from alignment at scaffold_1:1223117..1223985-

>mRNA_1681 ID=mRNA_1681|Name=jgi.p|Nanoce1779_2|573074|organism=Nannochloropsis oceanica|type=CDS|length=854bp|location=Sequence derived from alignment at scaffold_1:1223117..1223985- (Nannochloropsis oceanica)
CTGCTAATGCCTGTTGCTGGACCGATGCCGCAGCCCTTTTCAGACTCTGT
GCCGTCACCCCTGTCGGCGCATGGACTTGCCGCAACGCACGATTAGCTAC
CGGGATAGATGAAAAACCGGGGGGAAATACTACTACTCTTTATATTTATT
TGTCTTTACATGTCTTCACTTGGTCAGTTCCCCCGACCCATTTATCCCTC
ACCCTGCGAGCACGATCCCCCGCCGTTTCCCTCTTCGAGTTTCCTCGTTC
CCGCCGCCGCTGCCTCCTGCTGCTCACGTATCCTGCTTGACCGTCTTACC
CCACCAACCGACACACTGCCGATGGCAGGTCGGGTACTGCTGGGGGAACG
AATGCCAAGCGCCCCCAGGATGAGACGAGAGGGCACGGCAGTGTCGCCCT
TGGGGCGTGGCGGGATAGCCAGTCCCGCTGCTAATGCCTGTTGCTGGACC
GATGCCGCAGCCCTTTTCAGACTCTGTGCCGTCACCCCTGTCGGCGCATG
GACTTGCCGCAACGCACGATTAGCTACCGGGATAGATGAAAAACCGGGGG
GAAATACTACTACTCTTTATATTTATTTGTCTTTACATGTCTTCACTTGG
TCAGTTCCCCCGACCCATTTATCCCTCACCCTGCGAGCACGATCCCCCGC
CGTTTCCCTCTTCGAGTTTCCTCGTTCCCGCCGCCGCTGCCTCCTGCTGC
TCACGTATCCTGCTTGACCGTCTTACCCCACCAACCGACACACTGCCGAT
GGCAGGTCGGGTACTGCTGGGGGAACGAATGCCAAGCGCCCCCAGGATGA
GACGAGAGGGCACGGCAGTGTCGCCCTTGGGGCGTGGCGGGATAGCCAGT
CCCG
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Synonyms
Publications