jgi.p|Nanoce1779_2|627678, mRNA_168 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|627678
Unique Name	mRNA_168
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2229
Alignment location	scaffold_3:429447..431675 +

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Properties


Property Name	Value
TranscriptId	627764
Track	FilteredModels2
ProteinId	627678

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_3	supercontig	scaffold_3:429447..431675 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|627678	gene_168	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|627678	mRNA_168-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_168	CDS_168	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_3:429447..431675+
coding sequence from alignment at scaffold_3:429447..431675+

mRNA sequence

>mRNA_168 ID=mRNA_168|Name=jgi.p|Nanoce1779_2|627678|organism=Nannochloropsis oceanica|type=mRNA|length=2229bp
GGAGATTTTGCCACCTCTGCCGGTGTCATCATCTCCGGCTCCCTCTCAAA
CTAAAGCTGACTACCATGGAGCTGAGCACGACGCTGATTCAATTCCTCAA
GCGCCTTCCCGCCACCTGCCAGGCACCGCCACAATATCCGGCATCATCCA
AGTACGGAACCACACCTTGCGGTACTCTGCTCCATCTAGCTTCTTGAGAT
TGAAGAACGGTAACATGGGAAGCCTTAGCAGCAACCCAGAAGCTCAACTA
TTCATTCCGCCAGCCTTTGGCGTCACGGTGCTGTGCTCGTCGCATAGCTT
CGACAGCAAGGGCTCAACGAGTGGGTATGTCCTTTGGATCGGTCGTCGAG
GTATTATGATCGATCCTCCGCCACATTCCTCGTCTCTATCACAGAAGCAG
CAGATCCATCCCTCTGTCATTGATGGAGTCCTTTTGACGCACTGTCGTGC
GGATCATGACGCGGGAACCTTTCAGAAGCTCTTGTGCGAAAAACGCATCA
CTCTATACACCACTCTGACAATTTATGAGTCTTTCATTCGCAAGTATTCC
GCCTTGTCTGGCACTGATGCCGAATTCCTAAAAACCACTCACCACTTCCG
TCAAAGTCGGTGAGCAAGAAATGCGCTTGCGAGGTGCCTCGTTCAATTTT
TTCTACTCCCTACACTCTATTCCCTGCATCGGGCTCGAGGTCTTCTTCGC
TGGTAAAAGTATTATATTTAGCGCAGATCACTGCAATGACCCAATGCGGA
TCGAGCAGATGCACGTCGAGGGCGTCTCGAGCGCGGGCAGACGGACAGAG
CTCCTGAACTTTCCTTGGGACCACGACATGAAGCTGGCGTTCCTCCAATC
CACACACCTCTTGCGACGCTTGAAGCATTGGACGACGATATTAAAGAAAA
GATGTACCTGGTGCACGTGTCGGAAGGTGCAGTACCAAAGGGATCCAAGC
TCAAGGTCGCACCTGTGGGAGTGAAAAACACATTGGAGGTCCCGGTGGAT
GTGCCGGAGTTCAGAAAGGCTATCTCAGTGCTAAGCCTCGTAGAAGATAT
TCACTTCTTAGCCGACTTAACTTTGCCACAAGCGCGCGGCTTACTTGAGA
TTGGTTACAAGAAGCGCTATGCAGCGGGGGAGGTGGTGGTACCCAAGGGG
TCGAGGCCGACGAATTTTTACGTCTTGTCCATTGGCTTGCTCGAAGTGAC
ATACCCGAGAGACGATCTCGACGACTTGGACGAGGAGGAGAATACCGAAG
AAAAGGTGAAGCGAGTTCACTGGTCTATGGGGGACTACTTCGGGGAGGCG
GCCTTTGCGCCTCTCACGGCCACCCCGGGACATGATGAAGTGCGGGCGCT
GACAGATGTGGAGCTGATTGTGTTTGCCGGCTCGGAGCTCCGGCACCTGC
TGGCAGATGGCCCCAGCGTCTCTCGAGGTCTGCTACAATGCCGATATTTT
TCTTCGTCCTCGTCCTTATCCTTTCCTTCCTCCTCAATGCGCCTAGAATT
GTTGCTTACGTTCGACTATACCCTCAATTCTTTGGCGCTCAAAAGCTCCA
ACTTGAGAGCTTAGGAGATGTCCGTACGGTGAAAGCGGGCGAGTACGTCT
GGACGACGGGCCAGACTGCTGACTTCAGTGTGTTCATTTAAGCTGGTCTA
CTGACTTATGAAGGCCGATGTGGGCAGCTTATGAAATCTCTCGGCTCACT
TTTGTATCGACGCAGGGGAAGCATATCTTCCTCGACTTCGGGCGCCGCAG
CCATTGCTGCGTCCCCCGCCGCAGATACTGATGCCGCAGTCTCGTCCTCT
TCTTCCCCTCTTCCATTTTCACTAACCGCCACCAACCCCAGCCTCGCCAA
TTATGATGATGTTTTGGTCCAATGCGAGGACGCCACGCAGAGTCCCTGCC
CCCCGTCCTTTTCAAAACGAAATTTTGTCGGCTATTTGGCTCATTCCTCT
TCTCTGCTCGTGACATCAAATTCGCACCGTCAGGCACATAATTTGGTAGT
AATGACAGATGCAACCTTGATTACATTTTCCGCTAACAGAATGACATCTT
TCTTTCAAGCGAATCCGGGTGTTTTCCGCTGCCTATTTGACGCGGAGTTT
GTGCTGTGACGAGAAAGAGAAAGGAGAGGAGAGAGCGCGGAAAAAAAAGT
TTGGGCACGTTTATTTCAATGCGTCTGGACCGAGGAACGACGGGGGAAAA
AGATTAAAGAACAAACCCTCCAGCATCAC

protein sequence of jgi.p|Nanoce1779_2|627678

>mRNA_168-protein ID=mRNA_168-protein|Name=jgi.p|Nanoce1779_2|627678|organism=Nannochloropsis oceanica|type=polypeptide|length=221bp
MYLVHVSEGAVPKGSKLKVAPVGVKNTLEVPVDVPEFRKAISVLSLVEDI
HFLADLTLPQARGLLEIGYKKRYAAGEVVVPKGSRPTNFYVLSIGLLEVT
YPRDDLDDLDEEENTEEKVKRVHWSMGDYFGEAAFAPLTATPGHDEVRAL
TDVELIVFAGSELRHLLADGPSVSRGLLQCRYFSSSSSLSFPSSSMRLEL
LLTFDYTLNSLALKSSNLRA*

mRNA from alignment at scaffold_3:429447..431675+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_168 ID=mRNA_168|Name=jgi.p|Nanoce1779_2|627678|organism=Nannochloropsis oceanica|type=mRNA|length=2229bp|location=Sequence derived from alignment at scaffold_3:429447..431675+ (Nannochloropsis oceanica)
GGAGATTTTGCCACCTCTGCCGGTGTCATCATCTCCGGCTCCCTCTCAAA
CTAAAGCTGACTACCATGGAGCTGAGCACGACGCTGATTCAATTCCTCAA
GCGCCTTCCCGCCACCTGCCAGGCACCGCCACAATATCCGGCATCATCCA
AGTACGGAACCACACCTTGCGGTACTCTGCTCCATCTAGCTTCTTGAGAT
TGAAGAACGGTAACATGGGAAGCCTTAGCAGCAACCCAGAAGCTCAACTA
TTCATTCCGCCAGCCTTTGGCGTCACGGTGCTGTGCTCGTCGCATAGCTT
CGACAGCAAGGGCTCAACGAGTGGGTATGTCCTTTGGATCGGTCGTCGAG
GTATTATGATCGATCCTCCGCCACATTCCTCGTCTCTATCACAGAAGCAG
CAGATCCATCCCTCTGTCATTGATGGAGTCCTTTTGACGCACTGTCGTGC
GGATCATGACGCGGGAACCTTTCAGAAGCTCTTGTGCGAAAAACGCATCA
CTCTATACACCACTCTGACAATTTATGAGTCTTTCATTCGCAAGTATTCC
GCCTTGTCTGGCACTGATGCCGAATTCCTAAAAACCACTCACCACTTCCG
TCAAAGTCGGTGAGCAAGAAATGCGCTTGCGAGGTGCCTCGTTCAATTTT
TTCTACTCCCTACACTCTATTCCCTGCATCGGGCTCGAGGTCTTCTTCGC
TGGTAAAAGTATTATATTTAGCGCAGATCACTGCAATGACCCAATGCGGA
TCGAGCAGATGCACGTCGAGGGCGTCTCGAGCGCGGGCAGACGGACAGAG
CTCCTGAACTTTCCTTGGGACCACGACATGAAGCTGGCGTTCCTCCAATC
CACACACCTCTTGCGACGCTTGAAGCATTGGACGACGATATTAAAGAAAA
GATGTACCTGGTGCACGTGTCGGAAGGTGCAGTACCAAAGGGATCCAAGC
TCAAGGTCGCACCTGTGGGAGTGAAAAACACATTGGAGGTCCCGGTGGAT
GTGCCGGAGTTCAGAAAGGCTATCTCAGTGCTAAGCCTCGTAGAAGATAT
TCACTTCTTAGCCGACTTAACTTTGCCACAAGCGCGCGGCTTACTTGAGA
TTGGTTACAAGAAGCGCTATGCAGCGGGGGAGGTGGTGGTACCCAAGGGG
TCGAGGCCGACGAATTTTTACGTCTTGTCCATTGGCTTGCTCGAAGTGAC
ATACCCGAGAGACGATCTCGACGACTTGGACGAGGAGGAGAATACCGAAG
AAAAGGTGAAGCGAGTTCACTGGTCTATGGGGGACTACTTCGGGGAGGCG
GCCTTTGCGCCTCTCACGGCCACCCCGGGACATGATGAAGTGCGGGCGCT
GACAGATGTGGAGCTGATTGTGTTTGCCGGCTCGGAGCTCCGGCACCTGC
TGGCAGATGGCCCCAGCGTCTCTCGAGGTCTGCTACAATGCCGATATTTT
TCTTCGTCCTCGTCCTTATCCTTTCCTTCCTCCTCAATGCGCCTAGAATT
GTTGCTTACGTTCGACTATACCCTCAATTCTTTGGCGCTCAAAAGCTCCA
ACTTGAGAGCTTAGGAGATGTCCGTACGGTGAAAGCGGGCGAGTACGTCT
GGACGACGGGCCAGACTGCTGACTTCAGTGTGTTCATTTAAGCTGGTCTA
CTGACTTATGAAGGCCGATGTGGGCAGCTTATGAAATCTCTCGGCTCACT
TTTGTATCGACGCAGGGGAAGCATATCTTCCTCGACTTCGGGCGCCGCAG
CCATTGCTGCGTCCCCCGCCGCAGATACTGATGCCGCAGTCTCGTCCTCT
TCTTCCCCTCTTCCATTTTCACTAACCGCCACCAACCCCAGCCTCGCCAA
TTATGATGATGTTTTGGTCCAATGCGAGGACGCCACGCAGAGTCCCTGCC
CCCCGTCCTTTTCAAAACGAAATTTTGTCGGCTATTTGGCTCATTCCTCT
TCTCTGCTCGTGACATCAAATTCGCACCGTCAGGCACATAATTTGGTAGT
AATGACAGATGCAACCTTGATTACATTTTCCGCTAACAGAATGACATCTT
TCTTTCAAGCGAATCCGGGTGTTTTCCGCTGCCTATTTGACGCGGAGTTT
GTGCTGTGACGAGAAAGAGAAAGGAGAGGAGAGAGCGCGGAAAAAAAAGT
TTGGGCACGTTTATTTCAATGCGTCTGGACCGAGGAACGACGGGGGAAAA
AGATTAAAGAACAAACCCTCCAGCATCAC

Coding sequence (CDS) from alignment at scaffold_3:429447..431675+

>mRNA_168 ID=mRNA_168|Name=jgi.p|Nanoce1779_2|627678|organism=Nannochloropsis oceanica|type=CDS|length=663bp|location=Sequence derived from alignment at scaffold_3:429447..431675+ (Nannochloropsis oceanica)
ATGTACCTGGTGCACGTGTCGGAAGGTGCAGTACCAAAGGGATCCAAGCT
CAAGGTCGCACCTGTGGGAGTGAAAAACACATTGGAGGTCCCGGTGGATG
TGCCGGAGTTCAGAAAGGCTATCTCAGTGCTAAGCCTCGTAGAAGATATT
CACTTCTTAGCCGACTTAACTTTGCCACAAGCGCGCGGCTTACTTGAGAT
TGGTTACAAGAAGCGCTATGCAGCGGGGGAGGTGGTGGTACCCAAGGGGT
CGAGGCCGACGAATTTTTACGTCTTGTCCATTGGCTTGCTCGAAGTGACA
TACCCGAGAGACGATCTCGACGACTTGGACGAGGAGGAGAATACCGAAGA
AAAGGTGAAGCGAGTTCACTGGTCTATGGGGGACTACTTCGGGGAGGCGG
CCTTTGCGCCTCTCACGGCCACCCCGGGACATGATGAAGTGCGGGCGCTG
ACAGATGTGGAGCTGATTGTGTTTGCCGGCTCGGAGCTCCGGCACCTGCT
GGCAGATGGCCCCAGCGTCTCTCGAGGTCTGCTACAATGCCGATATTTTT
CTTCGTCCTCGTCCTTATCCTTTCCTTCCTCCTCAATGCGCCTAGAATTG
TTGCTTACGTTCGACTATACCCTCAATTCTTTGGCGCTCAAAAGCTCCAA
CTTGAGAGCTTAG

Synonyms

Publications