jgi.p|Nanoce1779_2|13810, mRNA_1679 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|13810
Unique NamemRNA_1679
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1693
Alignment locationscaffold_1:1218592..1220487 -

Link to JBrowse

Properties
Property NameValue
TranscriptId13896
TrackFilteredModels2
ProteinId13810
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_1supercontigscaffold_1:1218592..1220487 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|13810gene_1679Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|13810mRNA_1679-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1679CDS_1679Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1679 ID=mRNA_1679|Name=jgi.p|Nanoce1779_2|13810|organism=Nannochloropsis oceanica|type=mRNA|length=1693bp
CGTACGTCGAGCTGGTTTGCGAAGACTTGCGAACGTCCGAAAAGAGGAAG
ATGCTTGCGCAAGACCAAGAAGGCGGTACCTGGATCATCGACCCCGGTGC
TCTGTGGCGCATTCGCTGGGACATTCTGATACTGATCTTGATTATATGGA
CAAGCTATAGCGTACCTTACCGTGCTTCGTTTTCGACCCGTAGCAGCGGG
ATCGAGGCCTGGTCTGAGTTGTCCATCGACATCGTGTTTTGTTTGGACGT
GTTTCTTAACTTTATCACGGCTTACTATGAGTCGGAAGGCATTTTGCAAA
CGAATCCACGGGCCATTGCGCGTCGTTATTTGCGGGGTTGGTTCTTTCTT
GACCTTGTCTCCTCGATCCCAATCAGTGAGCTCTCATCTGCATTATCTCC
CACATTGGCCCGCGTCTTCCTCGCTCTCAAGTTCGTCAAGCTTTTGCGTT
TAGTCCGACTCATGCGCTACATTGATTCGAAGGAGATGGCCATGTTCTTT
ACGCCATCCATGCTTCGGCTCTTTACTACCTTTGTGCTTTTAGCTTGGAT
CTGGCATGTAATCACATGTCTGTACTGGTACATTTCCATCAGCCAGGGCC
TGGGGAGCTCTGAGTGGACCCCCGACGCTGATTACCATCACAACACGGAC
ATCCTCAACTACTTCCTTTGTTTTCTTTGGACAGTACAGGCGACTTTTTC
CATCCAAACCTATAGTCCGCCAGAGAAGATGGCCGAGGCTATTTTTACAA
TTTTTTGTTATTTGGTAGGGATTTTCTTGAATGCCTATGTGATTGGTAGC
GCGGGCTCCGCGCTTCAGAGCATGGACCAAGACAAGAACGAGCAGCGCCA
GCTGATGGACCGCATTATAACATACATGAAGAAGCGTCAGCTTCCCGCGT
ATTTTCAACGGATTATTTTGGATTTTTATAATTATATGAGTGCGAAGCAT
TCTGAGCAAGGCATCTTGACGGACCTGCCGCCCGCCATTCAGTTGCGCCT
TTCTCTATTGCTTAATCGCGAGCTTGTCAAAAACATTCCCTTGCTGAAGC
AGCTGGAGCTGAACACGATCATCGGTCTGATGCAAACACTGCAGTCAACA
ATGTACATGCCGGGGGAGCACGTCTTCAAGACTGGAGAGAAGGGCCAGTC
CCTCTACTTTGTTAAAAATGGGCAGCTGGAGATCACCTTGGACAACGTCA
ATGTGATAAGCAATCTGCAAAAAGGTGAAATGTTTGGGCAAGTCGCCTTG
ACGACCGACAGCAACCACGACTTCAATGTCCGCGCCGCTGTATATTCCGA
AGTTCTCTCCCTCCCTCGAGAGGCCTACGAGGACCTGAGTGCCGAGAGCG
AGAAATTTATGGAGCTCGTCGAGATGGAGGCGATCAAGCAAGAGCAGTTC
ATTGTCAAGGCCCAGAAGAACATGCAGCGGCTGGCGAAGATGAATCGGAT
GGGTGCCGGGGTAGGGAGAGAGGGAGCAAGGAATGTCGAAGCGGGGGGAG
GAGGAGTGGGAGGAGGAGGGGGGAGAGGGAAAAGGGCCGGGAACAACGGG
GGTGGGCCCAATGTTCGGGAATCAATTCAGAAAACCAAGACGATAAGCAG
CGTGGTGGGTATGTTCCTCAAAAATGGTAGCAGCAAGGTAACGCCAAAGA
GATGAGAGAAGCGATGAAGGGGCGGAGGGAGGGAAGCGATGCT
back to top

protein sequence of jgi.p|Nanoce1779_2|13810

>mRNA_1679-protein ID=mRNA_1679-protein|Name=jgi.p|Nanoce1779_2|13810|organism=Nannochloropsis oceanica|type=polypeptide|length=535bp
MLAQDQEGGTWIIDPGALWRIRWDILILILIIWTSYSVPYRASFSTRSSG
IEAWSELSIDIVFCLDVFLNFITAYYESEGILQTNPRAIARRYLRGWFFL
DLVSSIPISELSSALSPTLARVFLALKFVKLLRLVRLMRYIDSKEMAMFF
TPSMLRLFTTFVLLAWIWHVITCLYWYISISQGLGSSEWTPDADYHHNTD
ILNYFLCFLWTVQATFSIQTYSPPEKMAEAIFTIFCYLVGIFLNAYVIGS
AGSALQSMDQDKNEQRQLMDRIITYMKKRQLPAYFQRIILDFYNYMSAKH
SEQGILTDLPPAIQLRLSLLLNRELVKNIPLLKQLELNTIIGLMQTLQST
MYMPGEHVFKTGEKGQSLYFVKNGQLEITLDNVNVISNLQKGEMFGQVAL
TTDSNHDFNVRAAVYSEVLSLPREAYEDLSAESEKFMELVEMEAIKQEQF
IVKAQKNMQRLAKMNRMGAGVGREGARNVEAGGGGVGGGGGRGKRAGNNG
GGPNVRESIQKTKTISSVVGMFLKNGSSKVTPKR*
back to top

mRNA from alignment at scaffold_1:1218592..1220487-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1679 ID=mRNA_1679|Name=jgi.p|Nanoce1779_2|13810|organism=Nannochloropsis oceanica|type=mRNA|length=1896bp|location=Sequence derived from alignment at scaffold_1:1218592..1220487- (Nannochloropsis oceanica)
CGTACGTCGAGCTGGTTTGCGAAGACTTGCGAACGTCCGAAAAGAGGAAG
ATGCTTGCGCAAGACCAAGAAGGCGGTACCTGGATCATCGACCCCGGTGC
TCTGTGGCGCATTCGCTGGGACATTCTGATACTGATCTTGATTATATGGA
CAAGCTATAGCGTACCTTACCGTGCTTCGTTTTCGACCCGTAGCAGCGGG
ATCGAGGCCTGGTCTGAGTTGTCCATCGACATCGTGTTTTGTTTGGACGT
GTTTCTTAACTTTATCACGGCTTACTATGAGTCGGAAGGCATTTTGCAAA
CGAATCCACGGGCCATTGCGCGTCGTTATTTGCGGGGTTGGTTCTTTCTT
GACCTTGTCTCCTCGATCCCAATCAGTGAGCTCTCATCTGCATTATCTCC
CACATTGGCCCGCGTCTTCCTCGCTCTCAAGTTCGTCAAGCTTTTGCGTT
TAGTCCGACTCATGCGCTACATTGATTCGAAGGAGATGGCCATGTTCTTT
ACGCCATCCATGCTTCGGCTCTTTACTACCTTTGTGCTTTTAGCTTGGAT
CTGGCATGTAATCACATGTCTGTACTGGTACATTTCCATCAGCCAGGGCC
TGGGGAGCTCTGAGTGGACCCCCGACGCTGATTACCATCACAACACGGAC
ATCCTCAACTACTTCCTTTGTTTTCTTTGGACAGTACAGGCGACTTTTTC
CATCCAAACCTATAGTCCGCCAGAGAAGATGGCCGAGGCTATTTTTACAA
TTTTTTGTTATTTGGTAGGGATTTTCTTGAATGCCTATGTGATTGGTAGC
GCGGGCTCCGCGCTTCAGAGCATGGACCAAGACAAGAACGAGCAGCGCCA
GCTGATGGACCGCATTATAACATACATGAAGAAGCGTCAGCTTCCCGCGT
ATTTTCAACGGATTATTTTGGATTTTTATAATTATATGAGTGCGAAGCAT
TCTGAGCAAGGCATCTTGACGGACCTGCCGCCCGCCATTCAGTTGCGCCT
TTCTCTATTGCTTAATCGCGAGCTTGTCAAAAACATTCCCTTGCTGAAGC
AGCTGGAGCTGAACACGATCATCGGTCTGATGCAAACACTGCAGTCAACA
ATGTACATGCCGGGGGAGCACGTCTTCAAGACTGGAGAGAAGGGCCAGTC
CCTCTACTTTGTTAAAAATGGGCAGCTGGAGATCACCTTGGACAACGTCA
ATGTGATAAGGTGGGTGCTTTACGGAGGGTGGTGTGGCTGGATATGCCTT
GTTCATATGTTTCTTCTTCCCTGTACAATTTTATGCAAGTTTGAGGCTGC
CCACCTCCATTCCGCTGTCCATATCTAAGACCTGTTGGAACAGGAGACGT
ATTCTTTCAAGTGAACTTACCTATCCGGCACTTTCCCTTTCCCTCCATCC
CTCCCTCTCCTAGCAATCTGCAAAAAGGTGAAATGTTTGGGCAAGTCGCC
TTGACGACCGACAGCAACCACGACTTCAATGTCCGCGCCGCTGTATATTC
CGAAGTTCTCTCCCTCCCTCGAGAGGCCTACGAGGACCTGAGTGCCGAGA
GCGAGAAATTTATGGAGCTCGTCGAGATGGAGGCGATCAAGCAAGAGCAG
TTCATTGTCAAGGCCCAGAAGAACATGCAGCGGCTGGCGAAGATGAATCG
GATGGGTGCCGGGGTAGGGAGAGAGGGAGCAAGGAATGTCGAAGCGGGGG
GAGGAGGAGTGGGAGGAGGAGGGGGGAGAGGGAAAAGGGCCGGGAACAAC
GGGGGTGGGCCCAATGTTCGGGAATCAATTCAGAAAACCAAGACGATAAG
CAGCGTGGTGGGTATGTTCCTCAAAAATGGTAGCAGCAAGGTAACGCCAA
AGAGATGAGAGAAGCGATGAAGGGGCGGAGGGAGGGAAGCGATGCT
back to top

Coding sequence (CDS) from alignment at scaffold_1:1218592..1220487-

>mRNA_1679 ID=mRNA_1679|Name=jgi.p|Nanoce1779_2|13810|organism=Nannochloropsis oceanica|type=CDS|length=3210bp|location=Sequence derived from alignment at scaffold_1:1218592..1220487- (Nannochloropsis oceanica)
CAATCTGCAAAAAGGTGAAATGTTTGGGCAAGTCGCCTTGACGACCGACA
GCAACCACGACTTCAATGTCCGCGCCGCTGTATATTCCGAAGTTCTCTCC
CTCCCTCGAGAGGCCTACGAGGACCTGAGTGCCGAGAGCGAGAAATTTAT
GGAGCTCGTCGAGATGGAGGCGATCAAGCAAGAGCAGTTCATTGTCAAGG
CCCAGAAGAACATGCAGCGGCTGGCGAAGATGAATCGGATGGGTGCCGGG
GTAGGGAGAGAGGGAGCAAGGAATGTCGAAGCGGGGGGAGGAGGAGTGGG
AGGAGGAGGGGGGAGAGGGAAAAGGGCCGGGAACAACGGGGGTGGGCCCA
ATGTTCGGGAATCAATTCAGAAAACCAAGACGATAAGCAGCGTGGTGGGT
ATGTTCCTCAAAAATGGTAGCAGCAAGGTAACGCCAAAGAGATGAATGCT
TGCGCAAGACCAAGAAGGCGGTACCTGGATCATCGACCCCGGTGCTCTGT
GGCGCATTCGCTGGGACATTCTGATACTGATCTTGATTATATGGACAAGC
TATAGCGTACCTTACCGTGCTTCGTTTTCGACCCGTAGCAGCGGGATCGA
GGCCTGGTCTGAGTTGTCCATCGACATCGTGTTTTGTTTGGACGTGTTTC
TTAACTTTATCACGGCTTACTATGAGTCGGAAGGCATTTTGCAAACGAAT
CCACGGGCCATTGCGCGTCGTTATTTGCGGGGTTGGTTCTTTCTTGACCT
TGTCTCCTCGATCCCAATCAGTGAGCTCTCATCTGCATTATCTCCCACAT
TGGCCCGCGTCTTCCTCGCTCTCAAGTTCGTCAAGCTTTTGCGTTTAGTC
CGACTCATGCGCTACATTGATTCGAAGGAGATGGCCATGTTCTTTACGCC
ATCCATGCTTCGGCTCTTTACTACCTTTGTGCTTTTAGCTTGGATCTGGC
ATGTAATCACATGTCTGTACTGGTACATTTCCATCAGCCAGGGCCTGGGG
AGCTCTGAGTGGACCCCCGACGCTGATTACCATCACAACACGGACATCCT
CAACTACTTCCTTTGTTTTCTTTGGACAGTACAGGCGACTTTTTCCATCC
AAACCTATAGTCCGCCAGAGAAGATGGCCGAGGCTATTTTTACAATTTTT
TGTTATTTGGTAGGGATTTTCTTGAATGCCTATGTGATTGGTAGCGCGGG
CTCCGCGCTTCAGAGCATGGACCAAGACAAGAACGAGCAGCGCCAGCTGA
TGGACCGCATTATAACATACATGAAGAAGCGTCAGCTTCCCGCGTATTTT
CAACGGATTATTTTGGATTTTTATAATTATATGAGTGCGAAGCATTCTGA
GCAAGGCATCTTGACGGACCTGCCGCCCGCCATTCAGTTGCGCCTTTCTC
TATTGCTTAATCGCGAGCTTGTCAAAAACATTCCCTTGCTGAAGCAGCTG
GAGCTGAACACGATCATCGGTCTGATGCAAACACTGCAGTCAACAATGTA
CATGCCGGGGGAGCACGTCTTCAAGACTGGAGAGAAGGGCCAGTCCCTCT
ACTTTGTTAAAAATGGGCAGCTGGAGATCACCTTGGACAACGTCAATGTG
ATAAGCAATCTGCAAAAAGGTGAAATGTTTGGGCAAGTCGCCTTGACGAC
CGACAGCAACCACGACTTCAATGTCCGCGCCGCTGTATATTCCGAAGTTC
TCTCCCTCCCTCGAGAGGCCTACGAGGACCTGAGTGCCGAGAGCGAGAAA
TTTATGGAGCTCGTCGAGATGGAGGCGATCAAGCAAGAGCAGTTCATTGT
CAAGGCCCAGAAGAACATGCAGCGGCTGGCGAAGATGAATCGGATGGGTG
CCGGGGTAGGGAGAGAGGGAGCAAGGAATGTCGAAGCGGGGGGAGGAGGA
GTGGGAGGAGGAGGGGGGAGAGGGAAAAGGGCCGGGAACAACGGGGGTGG
GCCCAATGTTCGGGAATCAATTCAGAAAACCAAGACGATAAGCAGCGTGG
TGGGTATGTTCCTCAAAAATGGTAGCAGCAAGGTAACGCCAAAGAGATGA
ATGCTTGCGCAAGACCAAGAAGGCGGTACCTGGATCATCGACCCCGGTGC
TCTGTGGCGCATTCGCTGGGACATTCTGATACTGATCTTGATTATATGGA
CAAGCTATAGCGTACCTTACCGTGCTTCGTTTTCGACCCGTAGCAGCGGG
ATCGAGGCCTGGTCTGAGTTGTCCATCGACATCGTGTTTTGTTTGGACGT
GTTTCTTAACTTTATCACGGCTTACTATGAGTCGGAAGGCATTTTGCAAA
CGAATCCACGGGCCATTGCGCGTCGTTATTTGCGGGGTTGGTTCTTTCTT
GACCTTGTCTCCTCGATCCCAATCAGTGAGCTCTCATCTGCATTATCTCC
CACATTGGCCCGCGTCTTCCTCGCTCTCAAGTTCGTCAAGCTTTTGCGTT
TAGTCCGACTCATGCGCTACATTGATTCGAAGGAGATGGCCATGTTCTTT
ACGCCATCCATGCTTCGGCTCTTTACTACCTTTGTGCTTTTAGCTTGGAT
CTGGCATGTAATCACATGTCTGTACTGGTACATTTCCATCAGCCAGGGCC
TGGGGAGCTCTGAGTGGACCCCCGACGCTGATTACCATCACAACACGGAC
ATCCTCAACTACTTCCTTTGTTTTCTTTGGACAGTACAGGCGACTTTTTC
CATCCAAACCTATAGTCCGCCAGAGAAGATGGCCGAGGCTATTTTTACAA
TTTTTTGTTATTTGGTAGGGATTTTCTTGAATGCCTATGTGATTGGTAGC
GCGGGCTCCGCGCTTCAGAGCATGGACCAAGACAAGAACGAGCAGCGCCA
GCTGATGGACCGCATTATAACATACATGAAGAAGCGTCAGCTTCCCGCGT
ATTTTCAACGGATTATTTTGGATTTTTATAATTATATGAGTGCGAAGCAT
TCTGAGCAAGGCATCTTGACGGACCTGCCGCCCGCCATTCAGTTGCGCCT
TTCTCTATTGCTTAATCGCGAGCTTGTCAAAAACATTCCCTTGCTGAAGC
AGCTGGAGCTGAACACGATCATCGGTCTGATGCAAACACTGCAGTCAACA
ATGTACATGCCGGGGGAGCACGTCTTCAAGACTGGAGAGAAGGGCCAGTC
CCTCTACTTTGTTAAAAATGGGCAGCTGGAGATCACCTTGGACAACGTCA
ATGTGATAAG
back to top
Synonyms
Publications