jgi.p|Nanoce1779_2|573067, mRNA_1678 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|573067
Unique NamemRNA_1678
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1070
Alignment locationscaffold_1:1217592..1218791 -

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Properties
Property NameValue
TranscriptId573153
TrackFilteredModels2
ProteinId573067
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_1supercontigscaffold_1:1217592..1218791 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|573067gene_1678Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|573067mRNA_1678-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1678CDS_1678Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1678 ID=mRNA_1678|Name=jgi.p|Nanoce1779_2|573067|organism=Nannochloropsis oceanica|type=mRNA|length=1070bp
GGGGGAGGAGGAGTGGGAGGAGGAGGGGGGAGAGGGAAAAGGGCCGGGAA
CAACGGGGGTGGGCCCAATGTTCGGGAATCAATTCAGAAAACCAAGACGA
TAAGCAGCGTGGTGGGTATGTTCCTCAAAAATGGTAGCAGCAAGGTAACG
CCAAAGAGATGAGAGAAGCGATGAAGGGGCGGAGGGAGGGAAGCGATGCT
CAAAAAGCAATAGTGTAATGACATGCCTCATTTTTTTTTCGAATGATGGA
AGGCCGTGCGTGCTTTTCATGTGGTCTTCGGGTCAAAACCAAAATATGAC
AAACATGTGTATGTCTCTAGTCTGAAATCGTCCTATCTTCTTCGTATGAT
ATGCTTTAAAAGTCCTTTCATTCACCTAAGCTTGGTATTAACACTGGCTC
GCGGGATGCGCAGGACAATGCGCTCGGGTCTTAGGAACGCGGTGTCTTTG
AAGATGGGCTTGGAGTCATCCGAGGCCTGCACTGCTTCCCCTCCCACCCC
CACTGGTCCCAACGGCGGAATCTTTCCTGCTTCATCTCCCTTTCCTCCTC
CCTCCACCAGCAAATTCAACCCCGGCTCCCTCACCATCTCCCTTGAGGTT
TCCAATTCTCGGCCCTCCTCCTTCGAGGCCTCCTGCTGGGATGTCTTTGG
AAATGAGGCAGGGGTGGCAGCTCCAGTACGATTCCACGACGAAGAGGCAG
AAGACATGAATATTTTGATATGTCGCGTCAGAAAAGCCAATCAGCCGTGC
CCCACTCGCCTCGTGTGGGTGTATGAGGAGAGGAGGCAGAGGAGAGCTGG
GGAGGTTGGTAGTGGCTTTTATTTTGGCAACGTTTGATGCAGGGTTCGTT
GAGCCACGCTCTGGGCACTGCGATAGAGTGTGGGGGCGTGAAAAGCTTGT
GACATGAATTGTGACATGAGTGAGCGTACTGGGTTATGTCAGGGAGTGAG
CCGATTGAGTTAGCCGGAAAGCGCGAGAGTTGGCGAGGGGAAAGTGCTGC
TGGCGGTATGGCTGGCCAGGCTATCTTCTTGCCACCATATTGGTCCACGG
ACCTCGTAAGGAGATCTGGC
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protein sequence of jgi.p|Nanoce1779_2|573067

>mRNA_1678-protein ID=mRNA_1678-protein|Name=jgi.p|Nanoce1779_2|573067|organism=Nannochloropsis oceanica|type=polypeptide|length=164bp
MICFKSPFIHLSLVLTLARGMRRTMRSGLRNAVSLKMGLESSEACTASPP
TPTGPNGGIFPASSPFPPPSTSKFNPGSLTISLEVSNSRPSSFEASCWDV
FGNEAGVAAPVRFHDEEAEDMNILICRVRKANQPCPTRLVWVYEERRQRR
AGEVGSGFYFGNV*
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mRNA from alignment at scaffold_1:1217592..1218791-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1678 ID=mRNA_1678|Name=jgi.p|Nanoce1779_2|573067|organism=Nannochloropsis oceanica|type=mRNA|length=1200bp|location=Sequence derived from alignment at scaffold_1:1217592..1218791- (Nannochloropsis oceanica)
GGGGGAGGAGGAGTGGGAGGAGGAGGGGGGAGAGGGAAAAGGGCCGGGAA
CAACGGGGGTGGGCCCAATGTTCGGGAATCAATTCAGAAAACCAAGACGA
TAAGCAGCGTGGTGGGTATGTTCCTCAAAAATGGTAGCAGCAAGGTAACG
CCAAAGAGATGAGAGAAGCGATGAAGGGGCGGAGGGAGGGAAGCGATGCT
CAAAAAGCAATAGTGTAATGACATGCCTCATTTTTTTTTCGAATGATGGA
AGGCCGTGCGTGCTTTTCATGTGGTCTTCGGGTCAAAACCAAAATATGAC
AAACATGTGTATGTCTCTAGTCTGAAATCGTCCTATCTTCTTCGTATGAT
ATGCTTTAAAAGTCCTTTCATTCACCTAAGCTTGGTATTAACACTGGCTC
GCGGGATGCGCAGGACAATGCGCTCGGGTCCTATGATTTTGGTGGTCGAG
ACAAGGGAATATTAAGGATATAGGCGGGACGGTAGGGGAAAGCATCAATT
TAAATCGTGATGTACTTGAATGATTAAGTCGAGATAAGGAAAAAACCAGT
CGATACGTACTTAGGAACGCGGTGTCTTTGAAGATGGGCTTGGAGTCATC
CGAGGCCTGCACTGCTTCCCCTCCCACCCCCACTGGTCCCAACGGCGGAA
TCTTTCCTGCTTCATCTCCCTTTCCTCCTCCCTCCACCAGCAAATTCAAC
CCCGGCTCCCTCACCATCTCCCTTGAGGTTTCCAATTCTCGGCCCTCCTC
CTTCGAGGCCTCCTGCTGGGATGTCTTTGGAAATGAGGCAGGGGTGGCAG
CTCCAGTACGATTCCACGACGAAGAGGCAGAAGACATGAATATTTTGATA
TGTCGCGTCAGAAAAGCCAATCAGCCGTGCCCCACTCGCCTCGTGTGGGT
GTATGAGGAGAGGAGGCAGAGGAGAGCTGGGGAGGTTGGTAGTGGCTTTT
ATTTTGGCAACGTTTGATGCAGGGTTCGTTGAGCCACGCTCTGGGCACTG
CGATAGAGTGTGGGGGCGTGAAAAGCTTGTGACATGAATTGTGACATGAG
TGAGCGTACTGGGTTATGTCAGGGAGTGAGCCGATTGAGTTAGCCGGAAA
GCGCGAGAGTTGGCGAGGGGAAAGTGCTGCTGGCGGTATGGCTGGCCAGG
CTATCTTCTTGCCACCATATTGGTCCACGGACCTCGTAAGGAGATCTGGC
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Coding sequence (CDS) from alignment at scaffold_1:1217592..1218791-

>mRNA_1678 ID=mRNA_1678|Name=jgi.p|Nanoce1779_2|573067|organism=Nannochloropsis oceanica|type=CDS|length=984bp|location=Sequence derived from alignment at scaffold_1:1217592..1218791- (Nannochloropsis oceanica)
TTAGGAACGCGGTGTCTTTGAAGATGGGCTTGGAGTCATCCGAGGCCTGC
ACTGCTTCCCCTCCCACCCCCACTGGTCCCAACGGCGGAATCTTTCCTGC
TTCATCTCCCTTTCCTCCTCCCTCCACCAGCAAATTCAACCCCGGCTCCC
TCACCATCTCCCTTGAGGTTTCCAATTCTCGGCCCTCCTCCTTCGAGGCC
TCCTGCTGGGATGTCTTTGGAAATGAGGCAGGGGTGGCAGCTCCAGTACG
ATTCCACGACGAAGAGGCAGAAGACATGAATATTTTGATATGTCGCGTCA
GAAAAGCCAATCAGCCGTGCCCCACTCGCCTCGTGTGGGTGTATGAGGAG
AGGAGGCAGAGGAGAGCTGGGGAGGTTGGTAGTGGCTTTTATTTTGGCAA
CGTTTGAATGATATGCTTTAAAAGTCCTTTCATTCACCTAAGCTTGGTAT
TAACACTGGCTCGCGGGATGCGCAGGACAATGCGCTCGGGTCTTAGGAAC
GCGGTGTCTTTGAAGATGGGCTTGGAGTCATCCGAGGCCTGCACTGCTTC
CCCTCCCACCCCCACTGGTCCCAACGGCGGAATCTTTCCTGCTTCATCTC
CCTTTCCTCCTCCCTCCACCAGCAAATTCAACCCCGGCTCCCTCACCATC
TCCCTTGAGGTTTCCAATTCTCGGCCCTCCTCCTTCGAGGCCTCCTGCTG
GGATGTCTTTGGAAATGAGGCAGGGGTGGCAGCTCCAGTACGATTCCACG
ACGAAGAGGCAGAAGACATGAATATTTTGATATGTCGCGTCAGAAAAGCC
AATCAGCCGTGCCCCACTCGCCTCGTGTGGGTGTATGAGGAGAGGAGGCA
GAGGAGAGCTGGGGAGGTTGGTAGTGGCTTTTATTTTGGCAACGTTTGAA
TGATATGCTTTAAAAGTCCTTTCATTCACCTAAGCTTGGTATTAACACTG
GCTCGCGGGATGCGCAGGACAATGCGCTCGGGTC
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Synonyms
Publications