jgi.p|Nanoce1779_2|573065, mRNA_1677 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|573065
Unique NamemRNA_1677
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1659
Alignment locationscaffold_1:1215375..1217435 -

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Properties
Property NameValue
TranscriptId573151
TrackFilteredModels2
ProteinId573065
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_1supercontigscaffold_1:1215375..1217435 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|573065gene_1677Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|573065mRNA_1677-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1677CDS_1677Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1677 ID=mRNA_1677|Name=jgi.p|Nanoce1779_2|573065|organism=Nannochloropsis oceanica|type=mRNA|length=1659bp
ACAGCTCTCATCCCTAGCACAGATCGGAGCCATGCCCAAGTCTTTTGGAG
ACCGAGCGGGGGACATGCTTGTGGGTGCGGCGCTGACAGCCAGCTTGGGC
GCAGTGGCCCTCTTGCTAAGAAAACGAAAGAAGGGACAGGGTCCCGACGA
TTCGGTCAAGAAAGCCATTCTTGAGGCCCTGGATGAAGCCCGTCAATCCC
ATCCCAATATCAAACTCCCTCACCAACACGAACGAAAAATGCAAGAACGT
ATGGGGCGAATCTCAGCGGCCGAAGAAGACTTGCACAGTGAGGGACAGGA
ACGCCGGATGGTCACCGTGCGAGTGCCCGCGACGTCCGCGAATTTGGGGC
CGGGATACGATACGATTGGGATGGCATTGGATATGTGGAGCGAGATAACA
GTTGAACGGGCCGATAAGTTTGAAATCATTGCCGAGGGTGAGGGATCGGA
TGACGTGCCTCGGGATGAGACCAACCTTGTGGTAACGGGTATGAAGGCGG
CGTTTGCTGCTGCTAAGAAACCTATGCCACTTTTGAAGTACCATTGCATA
AACCGTATTCCTTATGCGCGTGGGTTGGGCTCATCGTCTGCTGCGATTGT
CGCCGGCCTGATTGCGGGCTTGGTGCTGGCGGGGCATCAGTTGCCATGTT
GGGGTTCGGAGGAGTTGCTGCAGCTGGCAGCGTCTATTGAGGGACATCCA
GATAATGTCGCCCCTGCGATTTATGGTGGGATTCAGTTGGGCTTGCACAC
GGGGGAGAGATGGACGAGTGAGCGCGTCAACACGCCTCCGGGGATCCAGC
TTGTGTTGTTTATTCCTGATTTTATTGGCAAGACAAGCGATGCCCGCGGG
GTACTTTCCGAGACGGTTTCGAGAAATGATGCCGTTTACAATATTGGGAG
GGTAGCGTGGTTGGTCAATGCCTTATCAACGTCTAACATGGACAATCTTC
ACATTGGCGTTGAGGACGCACTGCACCAACCTCAGCGAGGCAAAGCCGTT
TACAAGCATCTGTATCCTTTGATCGAGGCTGCCAATGCAGCGGGTGCAAA
TGGATGTTTTTTGTCAGGCGCGGGACCGACGGTGATGGCGATTACGAGTG
GGGCGTCGGGGGATATTTTTGCGCAGCGGTTGAGTGAGCGCGTGGATTGG
ACCGTGGCGGAGGCAATGGTGAGGACGGCAGAGGCGGTGGGCGTGAAGGG
ACAGGTATATATCACAAGTCCGGCGGAGCATGGGGCACAAGTGGTGAGTG
CAGAGCCGGCGTTCTCGAGTAAGGTGGTGCGTTTTAAGGGCGATGTGTAG
GCTGGGGTCACTGCGGGAGATGTAGGCGTTTTGAAAAAGGAAGCAAGATT
GAAGGAAGAAAGGAAGTAGAAAAGAACGACAGCAGGTGAAGACAGTAGAT
CTCCGGGCAAATGCTCTGAGTAGGAGGAGTAATTGATACTTTGGTTCTTT
TGTATGAGTGCGTACGTTTTGTGTGTACATTTGTCTCTTCGTCTGCGGGC
CTGATGGATTCACTTGCGCCTTCCCGCAGAAGAACAATGGAAAGGATGCT
TATGGTGGGGACTGGCAGGTACTAATTGTGATTTTGCGGATTTACTCGCA
CAAATTTAATCACGACGAAACGGAGAAACAAATTTACATACAAGATAGTA
TCTTTACCA
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protein sequence of jgi.p|Nanoce1779_2|573065

>mRNA_1677-protein ID=mRNA_1677-protein|Name=jgi.p|Nanoce1779_2|573065|organism=Nannochloropsis oceanica|type=polypeptide|length=423bp
MPKSFGDRAGDMLVGAALTASLGAVALLLRKRKKGQGPDDSVKKAILEAL
DEARQSHPNIKLPHQHERKMQERMGRISAAEEDLHSEGQERRMVTVRVPA
TSANLGPGYDTIGMALDMWSEITVERADKFEIIAEGEGSDDVPRDETNLV
VTGMKAAFAAAKKPMPLLKYHCINRIPYARGLGSSSAAIVAGLIAGLVLA
GHQLPCWGSEELLQLAASIEGHPDNVAPAIYGGIQLGLHTGERWTSERVN
TPPGIQLVLFIPDFIGKTSDARGVLSETVSRNDAVYNIGRVAWLVNALST
SNMDNLHIGVEDALHQPQRGKAVYKHLYPLIEAANAAGANGCFLSGAGPT
VMAITSGASGDIFAQRLSERVDWTVAEAMVRTAEAVGVKGQVYITSPAEH
GAQVVSAEPAFSSKVVRFKGDV*
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mRNA from alignment at scaffold_1:1215375..1217435-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1677 ID=mRNA_1677|Name=jgi.p|Nanoce1779_2|573065|organism=Nannochloropsis oceanica|type=mRNA|length=2061bp|location=Sequence derived from alignment at scaffold_1:1215375..1217435- (Nannochloropsis oceanica)
ACAGCTCTCATCCCTAGCACAGATCGGAGCCATGCCCAAGTCTTTTGGAG
ACCGAGCGGGGGACATGCTTGTGGGTGCGGCGCTGACAGCCAGCTTGGGC
GCAGTGGCCCTCTTGCTAAGAAAACGAAAGAAGGGACAGGTACGTGTTGG
TCAATGTGGTAATCGATTGGGATAGGGGATTGTATCCAAGCCGTGTGTAC
TTGGCGTGCAGAGGATTATATGGAAAAGGTTGGGCAGGATTAAAAATTGG
CGGAAAGACAGCGACGGCGTGTGGCTTACGGGTGATGGTACAGGTGGAGC
TTGACTCAAGGAGGGACAGTCTTGCACGAATTGGCGCGCCTTTCCTGTCT
TAATCACTTGCAATTTGAGGCAGCAAATGAGCTGCTCGCTATCCTTCAGT
GAAGTACGCCTCTGCTTCTTGCCGATATCGGTGGCAAACCAGCCGTGTGT
CAAGCAGTGTCTGCCGTTTTTCCAAACCCAGAGCAACACGTTCATAACAC
TCAGGCCCCCATCCCACCCAACCGATCTCTCATTCCCTCAGGGTCCCGAC
GATTCGGTCAAGAAAGCCATTCTTGAGGCCCTGGATGAAGCCCGTCAATC
CCATCCCAATATCAAACTCCCTCACCAACACGAACGAAAAATGCAAGAAC
GTATGGGGCGAATCTCAGCGGCCGAAGAAGACTTGCACAGTGAGGGACAG
GAACGCCGGATGGTCACCGTGCGAGTGCCCGCGACGTCCGCGAATTTGGG
GCCGGGATACGATACGATTGGGATGGCATTGGATATGTGGAGCGAGATAA
CAGTTGAACGGGCCGATAAGTTTGAAATCATTGCCGAGGGTGAGGGATCG
GATGACGTGCCTCGGGATGAGACCAACCTTGTGGTAACGGGTATGAAGGC
GGCGTTTGCTGCTGCTAAGAAACCTATGCCACTTTTGAAGTACCATTGCA
TAAACCGTATTCCTTATGCGCGTGGGTTGGGCTCATCGTCTGCTGCGATT
GTCGCCGGCCTGATTGCGGGCTTGGTGCTGGCGGGGCATCAGTTGCCATG
TTGGGGTTCGGAGGAGTTGCTGCAGCTGGCAGCGTCTATTGAGGGACATC
CAGATAATGTCGCCCCTGCGATTTATGGTGGGATTCAGTTGGGCTTGCAC
ACGGGGGAGAGATGGACGAGTGAGCGCGTCAACACGCCTCCGGGGATCCA
GCTTGTGTTGTTTATTCCTGATTTTATTGGCAAGACAAGCGATGCCCGCG
GGGTACTTTCCGAGACGGTTTCGAGAAATGATGCCGTTTACAATATTGGG
AGGGTAGCGTGGTTGGTCAATGCCTTATCAACGTCTAACATGGACAATCT
TCACATTGGCGTTGAGGACGCACTGCACCAACCTCAGCGAGGCAAAGCCG
TTTACAAGCATCTGTATCCTTTGATCGAGGCTGCCAATGCAGCGGGTGCA
AATGGATGTTTTTTGTCAGGCGCGGGACCGACGGTGATGGCGATTACGAG
TGGGGCGTCGGGGGATATTTTTGCGCAGCGGTTGAGTGAGCGCGTGGATT
GGACCGTGGCGGAGGCAATGGTGAGGACGGCAGAGGCGGTGGGCGTGAAG
GGACAGGTATATATCACAAGTCCGGCGGAGCATGGGGCACAAGTGGTGAG
TGCAGAGCCGGCGTTCTCGAGTAAGGTGGTGCGTTTTAAGGGCGATGTGT
AGGCTGGGGTCACTGCGGGAGATGTAGGCGTTTTGAAAAAGGAAGCAAGA
TTGAAGGAAGAAAGGAAGTAGAAAAGAACGACAGCAGGTGAAGACAGTAG
ATCTCCGGGCAAATGCTCTGAGTAGGAGGAGTAATTGATACTTTGGTTCT
TTTGTATGAGTGCGTACGTTTTGTGTGTACATTTGTCTCTTCGTCTGCGG
GCCTGATGGATTCACTTGCGCCTTCCCGCAGAAGAACAATGGAAAGGATG
CTTATGGTGGGGACTGGCAGGTACTAATTGTGATTTTGCGGATTTACTCG
CACAAATTTAATCACGACGAAACGGAGAAACAAATTTACATACAAGATAG
TATCTTTACCA
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Coding sequence (CDS) from alignment at scaffold_1:1215375..1217435-

>mRNA_1677 ID=mRNA_1677|Name=jgi.p|Nanoce1779_2|573065|organism=Nannochloropsis oceanica|type=CDS|length=2538bp|location=Sequence derived from alignment at scaffold_1:1215375..1217435- (Nannochloropsis oceanica)
GGTCCCGACGATTCGGTCAAGAAAGCCATTCTTGAGGCCCTGGATGAAGC
CCGTCAATCCCATCCCAATATCAAACTCCCTCACCAACACGAACGAAAAA
TGCAAGAACGTATGGGGCGAATCTCAGCGGCCGAAGAAGACTTGCACAGT
GAGGGACAGGAACGCCGGATGGTCACCGTGCGAGTGCCCGCGACGTCCGC
GAATTTGGGGCCGGGATACGATACGATTGGGATGGCATTGGATATGTGGA
GCGAGATAACAGTTGAACGGGCCGATAAGTTTGAAATCATTGCCGAGGGT
GAGGGATCGGATGACGTGCCTCGGGATGAGACCAACCTTGTGGTAACGGG
TATGAAGGCGGCGTTTGCTGCTGCTAAGAAACCTATGCCACTTTTGAAGT
ACCATTGCATAAACCGTATTCCTTATGCGCGTGGGTTGGGCTCATCGTCT
GCTGCGATTGTCGCCGGCCTGATTGCGGGCTTGGTGCTGGCGGGGCATCA
GTTGCCATGTTGGGGTTCGGAGGAGTTGCTGCAGCTGGCAGCGTCTATTG
AGGGACATCCAGATAATGTCGCCCCTGCGATTTATGGTGGGATTCAGTTG
GGCTTGCACACGGGGGAGAGATGGACGAGTGAGCGCGTCAACACGCCTCC
GGGGATCCAGCTTGTGTTGTTTATTCCTGATTTTATTGGCAAGACAAGCG
ATGCCCGCGGGGTACTTTCCGAGACGGTTTCGAGAAATGATGCCGTTTAC
AATATTGGGAGGGTAGCGTGGTTGGTCAATGCCTTATCAACGTCTAACAT
GGACAATCTTCACATTGGCGTTGAGGACGCACTGCACCAACCTCAGCGAG
GCAAAGCCGTTTACAAGCATCTGTATCCTTTGATCGAGGCTGCCAATGCA
GCGGGTGCAAATGGATGTTTTTTGTCAGGCGCGGGACCGACGGTGATGGC
GATTACGAGTGGGGCGTCGGGGGATATTTTTGCGCAGCGGTTGAGTGAGC
GCGTGGATTGGACCGTGGCGGAGGCAATGGTGAGGACGGCAGAGGCGGTG
GGCGTGAAGGGACAGGTATATATCACAAGTCCGGCGGAGCATGGGGCACA
AGTGGTGAGTGCAGAGCCGGCGTTCTCGAGTAAGGTGGTGCGTTTTAAGG
GCGATGTGTAGATGCCCAAGTCTTTTGGAGACCGAGCGGGGGACATGCTT
GTGGGTGCGGCGCTGACAGCCAGCTTGGGCGCAGTGGCCCTCTTGCTAAG
AAAACGAAAGAAGGGACAGGGTCCCGACGATTCGGTCAAGAAAGCCATTC
TTGAGGCCCTGGATGAAGCCCGTCAATCCCATCCCAATATCAAACTCCCT
CACCAACACGAACGAAAAATGCAAGAACGTATGGGGCGAATCTCAGCGGC
CGAAGAAGACTTGCACAGTGAGGGACAGGAACGCCGGATGGTCACCGTGC
GAGTGCCCGCGACGTCCGCGAATTTGGGGCCGGGATACGATACGATTGGG
ATGGCATTGGATATGTGGAGCGAGATAACAGTTGAACGGGCCGATAAGTT
TGAAATCATTGCCGAGGGTGAGGGATCGGATGACGTGCCTCGGGATGAGA
CCAACCTTGTGGTAACGGGTATGAAGGCGGCGTTTGCTGCTGCTAAGAAA
CCTATGCCACTTTTGAAGTACCATTGCATAAACCGTATTCCTTATGCGCG
TGGGTTGGGCTCATCGTCTGCTGCGATTGTCGCCGGCCTGATTGCGGGCT
TGGTGCTGGCGGGGCATCAGTTGCCATGTTGGGGTTCGGAGGAGTTGCTG
CAGCTGGCAGCGTCTATTGAGGGACATCCAGATAATGTCGCCCCTGCGAT
TTATGGTGGGATTCAGTTGGGCTTGCACACGGGGGAGAGATGGACGAGTG
AGCGCGTCAACACGCCTCCGGGGATCCAGCTTGTGTTGTTTATTCCTGAT
TTTATTGGCAAGACAAGCGATGCCCGCGGGGTACTTTCCGAGACGGTTTC
GAGAAATGATGCCGTTTACAATATTGGGAGGGTAGCGTGGTTGGTCAATG
CCTTATCAACGTCTAACATGGACAATCTTCACATTGGCGTTGAGGACGCA
CTGCACCAACCTCAGCGAGGCAAAGCCGTTTACAAGCATCTGTATCCTTT
GATCGAGGCTGCCAATGCAGCGGGTGCAAATGGATGTTTTTTGTCAGGCG
CGGGACCGACGGTGATGGCGATTACGAGTGGGGCGTCGGGGGATATTTTT
GCGCAGCGGTTGAGTGAGCGCGTGGATTGGACCGTGGCGGAGGCAATGGT
GAGGACGGCAGAGGCGGTGGGCGTGAAGGGACAGGTATATATCACAAGTC
CGGCGGAGCATGGGGCACAAGTGGTGAGTGCAGAGCCGGCGTTCTCGAGT
AAGGTGGTGCGTTTTAAGGGCGATGTGTAGATGCCCAAGTCTTTTGGAGA
CCGAGCGGGGGACATGCTTGTGGGTGCGGCGCTGACAGCCAGCTTGGGCG
CAGTGGCCCTCTTGCTAAGAAAACGAAAGAAGGGACAG
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Synonyms
Publications