jgi.p|Nanoce1779_2|645931, mRNA_1676 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|645931
Unique Name	mRNA_1676
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1888
Alignment location	scaffold_1:1213659..1215546 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	646017
Track	FilteredModels2
ProteinId	645931

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_1	supercontig	scaffold_1:1213659..1215546 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|645931	gene_1676	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|645931	mRNA_1676-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_1676	CDS_1676	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_1:1213659..1215546+
coding sequence from alignment at scaffold_1:1213659..1215546+

mRNA sequence

>mRNA_1676 ID=mRNA_1676|Name=jgi.p|Nanoce1779_2|645931|organism=Nannochloropsis oceanica|type=mRNA|length=1888bp
ACCTCATTAATCTCTTGTCATGTGCTTGATGGCGTTCAATCGTTGATGTC
ATGTCTATTTTGTGCCACTTAAGTTCCCTTTCAAAGTCCTCCGCTTTCGC
TTTCTCCATGAAGTGTGGCACGTACCGACCCAGACGGCTCAGTTCTTTTT
CATCTATATTCCACTAAAGAGCCTAAGCAACAATGCCACGCCGCGTCCTG
TTCTTCTTTCTCCTGGCCTTTATTGCCTCGGCTACTCGGACGCGTGGGGG
GCACCGCCCCAGATCTCCTACGCCTCCTGTCTCATCCGTGCAAACGCCGC
TTGTCCCACTGCACAACTGGGGGTATGCTTACTCGTTTGAGGTGACCACT
TTTGTGGCACCCACCACAATTGTCGAAATTCAAGGCATCGTTCAGGACAC
TGTGCTATATCCAAGCCCTGTGCGAGCCCTCGGCAACATTCACAGCGTTA
CAGCCTGCGTCGTGAGCAATGGTACCATCGTAGACATGCGGGGCATGGAC
AAGGTTTTGAGTCTGGACAAGAGTAGCCATGGCTCGCAGACGGTGTCAGT
CCAAGGTGGGGTCACATTGATCAATGTGCACAACTACCTGGCTGACCAGG
ATTTGGAGCTGCCCTTTGCTGCTGAGATAGGGGACGCCACAGTCGGGAGC
CTCACAAGCAGCATCAGCAAGGACTCAGGCGTGGGTGACCCGGCGGTGAC
GGGCAGCCTCTACAAGAGCATCGTAGGTGTAACTTATGTGAATCACATGG
GCGATCTAGTGACACTGACAGACGCGGACAACACCACGGCCTTGGCGCAC
TTCAAGTCGAGTGAGGGCCTTCTCGGCATTGTCGTGATCGTCGATCTCCT
CGTCAGGCCCGCCAAGCTCCTGACCTTTACGAACCGGGTCCTACCCACGG
CGGAGGTGTTGAACCATCTGTATAATAATTCGTTCCACGTTAACGCTGAC
ACCAACTATTGGTTCTTGCTTCATCCGGAGTACAGTCTGGTGCAGAAACG
CACGCTGGCTTTACCGGGTGCTCAGGAGACGGACCCTGTTACCCTCAGCG
TCATTGTCAATGCGACTCGCGCGTCCTTTGCCGAGGGAATTTTGGGTGTA
GCCTTAATTAGCAAGAGCGTTGGGAATCCCCCTATGCGATGGACGACCTA
CAAGCACAAGATGGTCAATCATTACGGTGCTCTACCCGCTCCAATCGGCA
ACGCCTCAGTGGGCCCGCGGTTAGATTTTACGTGGTTTGAGTATCCTATC
GAGAGGTTCCAGGAGATTGTGATGGCATATATGGCGTTTTGGAAGGAATT
CAAGGACTCACATAATGACTTTGAGCCTGCCGCTGCTGCTACGTACTTTG
TGCGACGCATTTCGGAGAAACCGCATGGATGGTTCAGCCAAACTGGGAAA
GGGTTCGAGAATCCCGGCCTCTCCTTCACGCTGGACCCTATCTATCACGA
TCCCAACGATCCGCTATGGCAGGAATTTCTGCAAGAGTCGATCAAGTTTG
CAACTACGTATGGCGGGCGCGTAGCCTTGACTCAGACGCGCTTTTTGACT
CGTGAGGACTTTTTGAGCGCTCCTGGTAATGTGGCTCTGGAAGAATCGCC
GAACGGCCGATTTACCAGTGCGTACTTTGCCCAGTTTGTTTTTTTCAAAA
AAAATGCCACGCCACCGGGTACGACTGAAGTGCAGAAAGACGCAACGTAA
ACACAAACCGGTCGCTTGGTAAAGATACTATCTTGTATGTAAATTTGTTT
CTCCGTTTCGTCGTGATTAAATTTGTGCGAGTAAATCCGCAAAATCACAA
TTAGTACCTGCCAGTCCCCACCATAAGCATCCTTTCCATTGTTCTTCTGC
GGGAAGGCGCAAGTGAATCCATCAGGCCCGCAGACGAA

protein sequence of jgi.p|Nanoce1779_2|645931

>mRNA_1676-protein ID=mRNA_1676-protein|Name=jgi.p|Nanoce1779_2|645931|organism=Nannochloropsis oceanica|type=polypeptide|length=506bp
MPRRVLFFFLLAFIASATRTRGGHRPRSPTPPVSSVQTPLVPLHNWGYAY
SFEVTTFVAPTTIVEIQGIVQDTVLYPSPVRALGNIHSVTACVVSNGTIV
DMRGMDKVLSLDKSSHGSQTVSVQGGVTLINVHNYLADQDLELPFAAEIG
DATVGSLTSSISKDSGVGDPAVTGSLYKSIVGVTYVNHMGDLVTLTDADN
TTALAHFKSSEGLLGIVVIVDLLVRPAKLLTFTNRVLPTAEVLNHLYNNS
FHVNADTNYWFLLHPEYSLVQKRTLALPGAQETDPVTLSVIVNATRASFA
EGILGVALISKSVGNPPMRWTTYKHKMVNHYGALPAPIGNASVGPRLDFT
WFEYPIERFQEIVMAYMAFWKEFKDSHNDFEPAAAATYFVRRISEKPHGW
FSQTGKGFENPGLSFTLDPIYHDPNDPLWQEFLQESIKFATTYGGRVALT
QTRFLTREDFLSAPGNVALEESPNGRFTSAYFAQFVFFKKNATPPGTTEV
QKDAT*

mRNA from alignment at scaffold_1:1213659..1215546+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_1676 ID=mRNA_1676|Name=jgi.p|Nanoce1779_2|645931|organism=Nannochloropsis oceanica|type=mRNA|length=1888bp|location=Sequence derived from alignment at scaffold_1:1213659..1215546+ (Nannochloropsis oceanica)
ACCTCATTAATCTCTTGTCATGTGCTTGATGGCGTTCAATCGTTGATGTC
ATGTCTATTTTGTGCCACTTAAGTTCCCTTTCAAAGTCCTCCGCTTTCGC
TTTCTCCATGAAGTGTGGCACGTACCGACCCAGACGGCTCAGTTCTTTTT
CATCTATATTCCACTAAAGAGCCTAAGCAACAATGCCACGCCGCGTCCTG
TTCTTCTTTCTCCTGGCCTTTATTGCCTCGGCTACTCGGACGCGTGGGGG
GCACCGCCCCAGATCTCCTACGCCTCCTGTCTCATCCGTGCAAACGCCGC
TTGTCCCACTGCACAACTGGGGGTATGCTTACTCGTTTGAGGTGACCACT
TTTGTGGCACCCACCACAATTGTCGAAATTCAAGGCATCGTTCAGGACAC
TGTGCTATATCCAAGCCCTGTGCGAGCCCTCGGCAACATTCACAGCGTTA
CAGCCTGCGTCGTGAGCAATGGTACCATCGTAGACATGCGGGGCATGGAC
AAGGTTTTGAGTCTGGACAAGAGTAGCCATGGCTCGCAGACGGTGTCAGT
CCAAGGTGGGGTCACATTGATCAATGTGCACAACTACCTGGCTGACCAGG
ATTTGGAGCTGCCCTTTGCTGCTGAGATAGGGGACGCCACAGTCGGGAGC
CTCACAAGCAGCATCAGCAAGGACTCAGGCGTGGGTGACCCGGCGGTGAC
GGGCAGCCTCTACAAGAGCATCGTAGGTGTAACTTATGTGAATCACATGG
GCGATCTAGTGACACTGACAGACGCGGACAACACCACGGCCTTGGCGCAC
TTCAAGTCGAGTGAGGGCCTTCTCGGCATTGTCGTGATCGTCGATCTCCT
CGTCAGGCCCGCCAAGCTCCTGACCTTTACGAACCGGGTCCTACCCACGG
CGGAGGTGTTGAACCATCTGTATAATAATTCGTTCCACGTTAACGCTGAC
ACCAACTATTGGTTCTTGCTTCATCCGGAGTACAGTCTGGTGCAGAAACG
CACGCTGGCTTTACCGGGTGCTCAGGAGACGGACCCTGTTACCCTCAGCG
TCATTGTCAATGCGACTCGCGCGTCCTTTGCCGAGGGAATTTTGGGTGTA
GCCTTAATTAGCAAGAGCGTTGGGAATCCCCCTATGCGATGGACGACCTA
CAAGCACAAGATGGTCAATCATTACGGTGCTCTACCCGCTCCAATCGGCA
ACGCCTCAGTGGGCCCGCGGTTAGATTTTACGTGGTTTGAGTATCCTATC
GAGAGGTTCCAGGAGATTGTGATGGCATATATGGCGTTTTGGAAGGAATT
CAAGGACTCACATAATGACTTTGAGCCTGCCGCTGCTGCTACGTACTTTG
TGCGACGCATTTCGGAGAAACCGCATGGATGGTTCAGCCAAACTGGGAAA
GGGTTCGAGAATCCCGGCCTCTCCTTCACGCTGGACCCTATCTATCACGA
TCCCAACGATCCGCTATGGCAGGAATTTCTGCAAGAGTCGATCAAGTTTG
CAACTACGTATGGCGGGCGCGTAGCCTTGACTCAGACGCGCTTTTTGACT
CGTGAGGACTTTTTGAGCGCTCCTGGTAATGTGGCTCTGGAAGAATCGCC
GAACGGCCGATTTACCAGTGCGTACTTTGCCCAGTTTGTTTTTTTCAAAA
AAAATGCCACGCCACCGGGTACGACTGAAGTGCAGAAAGACGCAACGTAA
ACACAAACCGGTCGCTTGGTAAAGATACTATCTTGTATGTAAATTTGTTT
CTCCGTTTCGTCGTGATTAAATTTGTGCGAGTAAATCCGCAAAATCACAA
TTAGTACCTGCCAGTCCCCACCATAAGCATCCTTTCCATTGTTCTTCTGC
GGGAAGGCGCAAGTGAATCCATCAGGCCCGCAGACGAA

Coding sequence (CDS) from alignment at scaffold_1:1213659..1215546+

>mRNA_1676 ID=mRNA_1676|Name=jgi.p|Nanoce1779_2|645931|organism=Nannochloropsis oceanica|type=CDS|length=1518bp|location=Sequence derived from alignment at scaffold_1:1213659..1215546+ (Nannochloropsis oceanica)
ATGCCACGCCGCGTCCTGTTCTTCTTTCTCCTGGCCTTTATTGCCTCGGC
TACTCGGACGCGTGGGGGGCACCGCCCCAGATCTCCTACGCCTCCTGTCT
CATCCGTGCAAACGCCGCTTGTCCCACTGCACAACTGGGGGTATGCTTAC
TCGTTTGAGGTGACCACTTTTGTGGCACCCACCACAATTGTCGAAATTCA
AGGCATCGTTCAGGACACTGTGCTATATCCAAGCCCTGTGCGAGCCCTCG
GCAACATTCACAGCGTTACAGCCTGCGTCGTGAGCAATGGTACCATCGTA
GACATGCGGGGCATGGACAAGGTTTTGAGTCTGGACAAGAGTAGCCATGG
CTCGCAGACGGTGTCAGTCCAAGGTGGGGTCACATTGATCAATGTGCACA
ACTACCTGGCTGACCAGGATTTGGAGCTGCCCTTTGCTGCTGAGATAGGG
GACGCCACAGTCGGGAGCCTCACAAGCAGCATCAGCAAGGACTCAGGCGT
GGGTGACCCGGCGGTGACGGGCAGCCTCTACAAGAGCATCGTAGGTGTAA
CTTATGTGAATCACATGGGCGATCTAGTGACACTGACAGACGCGGACAAC
ACCACGGCCTTGGCGCACTTCAAGTCGAGTGAGGGCCTTCTCGGCATTGT
CGTGATCGTCGATCTCCTCGTCAGGCCCGCCAAGCTCCTGACCTTTACGA
ACCGGGTCCTACCCACGGCGGAGGTGTTGAACCATCTGTATAATAATTCG
TTCCACGTTAACGCTGACACCAACTATTGGTTCTTGCTTCATCCGGAGTA
CAGTCTGGTGCAGAAACGCACGCTGGCTTTACCGGGTGCTCAGGAGACGG
ACCCTGTTACCCTCAGCGTCATTGTCAATGCGACTCGCGCGTCCTTTGCC
GAGGGAATTTTGGGTGTAGCCTTAATTAGCAAGAGCGTTGGGAATCCCCC
TATGCGATGGACGACCTACAAGCACAAGATGGTCAATCATTACGGTGCTC
TACCCGCTCCAATCGGCAACGCCTCAGTGGGCCCGCGGTTAGATTTTACG
TGGTTTGAGTATCCTATCGAGAGGTTCCAGGAGATTGTGATGGCATATAT
GGCGTTTTGGAAGGAATTCAAGGACTCACATAATGACTTTGAGCCTGCCG
CTGCTGCTACGTACTTTGTGCGACGCATTTCGGAGAAACCGCATGGATGG
TTCAGCCAAACTGGGAAAGGGTTCGAGAATCCCGGCCTCTCCTTCACGCT
GGACCCTATCTATCACGATCCCAACGATCCGCTATGGCAGGAATTTCTGC
AAGAGTCGATCAAGTTTGCAACTACGTATGGCGGGCGCGTAGCCTTGACT
CAGACGCGCTTTTTGACTCGTGAGGACTTTTTGAGCGCTCCTGGTAATGT
GGCTCTGGAAGAATCGCCGAACGGCCGATTTACCAGTGCGTACTTTGCCC
AGTTTGTTTTTTTCAAAAAAAATGCCACGCCACCGGGTACGACTGAAGTG
CAGAAAGACGCAACGTAA

Synonyms

Publications