jgi.p|Nanoce1779_2|573061, mRNA_1675 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|573061
Unique NamemRNA_1675
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1243
Alignment locationscaffold_1:1211431..1212673 -

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Properties
Property NameValue
TranscriptId573147
TrackFilteredModels2
ProteinId573061
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_1supercontigscaffold_1:1211431..1212673 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|573061gene_1675Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|573061mRNA_1675-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1675CDS_1675Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1675 ID=mRNA_1675|Name=jgi.p|Nanoce1779_2|573061|organism=Nannochloropsis oceanica|type=mRNA|length=1243bp
AAGCTGTCATGACTTCGCGATCGAGACAGTTATCTTCTTCTACAAGTGCA
GGGAGCCAAGAAGGTATCTTATCACCACCAAGACTCTCCTTGGCCGAAAG
TAGCAATTGTAATGTCAGTAGTACTTCCATTATTACATCAAGAAGCAGCA
CTACTTCTCACTCTCTGCCACCCCTTCGTAACGGCCTCGCCCTGATTCGT
CCCCCCGGGCATCATGCGGAAGCGCACCATGCCCGTGGCTTCTGCCTTCT
TAATAATGTCGCGATCGCCGCTCAATTCGCCCGACAAAGGCTAGGTGTCA
GCAAAATCTTGATATGTGACTGGGACGTGCATCATGGGCAGGGTACCCAG
CAGATGTTCTGGAAGGATAAGTCTGTGCTATATTTCTCTGTGCATAGATA
TGACAATGGAAGCTTTTTTCCGGGCACGGGCTCACCGAAAGGGGTAGGAG
AGGGGGAGGGAGAGGGTTACACAATAAATGTGGCATGGAATGAGGGAGGG
ATGGGGGACAGGGAGTACAGGGAGGTCTGGAGGAGGGTATTGTTGCCGGT
AGCGAGGGCATTTGAGCCGGAGTTGATTTTGGTGTCGGCGGGGTTCGACG
GGGCAAAAGGGGATGGAATGGGGGGATGTGAGGTTACTGGAAAGGGTGGA
TTTGGATGGATGACGCAACGGCTGGTGCGGGAGGTAGAGAGCGCGCAGGG
AAGGGTGGTGTTGGCCCTGGAGGGAGGTTACAAATTGAGTGTGTTGGGGG
AGTGCGTGGAGGCTTGTTTGGGAGGTTTGATGGAGAAGGAAGGAGGAGAA
GGTGGGGATGAGGAGACGAACGAGGATACTGAAGAGGAAGAGATTAGAGA
GGAGGCGACAGAGGCGATTGCGAGGACGATTGCGGTGCACAGGAAGTACT
GGCCATGTTTGGGTGGGGGGCTTGGTGATGACGGTCACGGGAAGGAGGGA
GAGGAGGTGAAGAGTTGTAAAAGTGTATAAGGCGAGTAACGGTTGTGTAG
CCCTTGCTATTTTCGAACGGTAAGGTAGGTAATATTTTAAACGGTACGGT
AAGTGTATATGCTTCCACGCATCTCGAGAGAGAAAGAAAATTGATAGGAC
TGTGTGGCTTGTTGGAGCGTTTGTCGGCTTTTCATACACTCATTATCTTG
GCGTTAGTAAGAGTAACGCTTGGGTGCGTGTGTAAATGACAATGTAGAGA
AAGGAAAATAAAGATAAAATATGACTGGCGAGGCGTTTCTTCT
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protein sequence of jgi.p|Nanoce1779_2|573061

>mRNA_1675-protein ID=mRNA_1675-protein|Name=jgi.p|Nanoce1779_2|573061|organism=Nannochloropsis oceanica|type=polypeptide|length=324bp
MTSRSRQLSSSTSAGSQEGILSPPRLSLAESSNCNVSSTSIITSRSSTTS
HSLPPLRNGLALIRPPGHHAEAHHARGFCLLNNVAIAAQFARQRLGVSKI
LICDWDVHHGQGTQQMFWKDKSVLYFSVHRYDNGSFFPGTGSPKGVGEGE
GEGYTINVAWNEGGMGDREYREVWRRVLLPVARAFEPELILVSAGFDGAK
GDGMGGCEVTGKGGFGWMTQRLVREVESAQGRVVLALEGGYKLSVLGECV
EACLGGLMEKEGGEGGDEETNEDTEEEEIREEATEAIARTIAVHRKYWPC
LGGGLGDDGHGKEGEEVKSCKSV*
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mRNA from alignment at scaffold_1:1211431..1212673-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1675 ID=mRNA_1675|Name=jgi.p|Nanoce1779_2|573061|organism=Nannochloropsis oceanica|type=mRNA|length=1243bp|location=Sequence derived from alignment at scaffold_1:1211431..1212673- (Nannochloropsis oceanica)
AAGCTGTCATGACTTCGCGATCGAGACAGTTATCTTCTTCTACAAGTGCA
GGGAGCCAAGAAGGTATCTTATCACCACCAAGACTCTCCTTGGCCGAAAG
TAGCAATTGTAATGTCAGTAGTACTTCCATTATTACATCAAGAAGCAGCA
CTACTTCTCACTCTCTGCCACCCCTTCGTAACGGCCTCGCCCTGATTCGT
CCCCCCGGGCATCATGCGGAAGCGCACCATGCCCGTGGCTTCTGCCTTCT
TAATAATGTCGCGATCGCCGCTCAATTCGCCCGACAAAGGCTAGGTGTCA
GCAAAATCTTGATATGTGACTGGGACGTGCATCATGGGCAGGGTACCCAG
CAGATGTTCTGGAAGGATAAGTCTGTGCTATATTTCTCTGTGCATAGATA
TGACAATGGAAGCTTTTTTCCGGGCACGGGCTCACCGAAAGGGGTAGGAG
AGGGGGAGGGAGAGGGTTACACAATAAATGTGGCATGGAATGAGGGAGGG
ATGGGGGACAGGGAGTACAGGGAGGTCTGGAGGAGGGTATTGTTGCCGGT
AGCGAGGGCATTTGAGCCGGAGTTGATTTTGGTGTCGGCGGGGTTCGACG
GGGCAAAAGGGGATGGAATGGGGGGATGTGAGGTTACTGGAAAGGGTGGA
TTTGGATGGATGACGCAACGGCTGGTGCGGGAGGTAGAGAGCGCGCAGGG
AAGGGTGGTGTTGGCCCTGGAGGGAGGTTACAAATTGAGTGTGTTGGGGG
AGTGCGTGGAGGCTTGTTTGGGAGGTTTGATGGAGAAGGAAGGAGGAGAA
GGTGGGGATGAGGAGACGAACGAGGATACTGAAGAGGAAGAGATTAGAGA
GGAGGCGACAGAGGCGATTGCGAGGACGATTGCGGTGCACAGGAAGTACT
GGCCATGTTTGGGTGGGGGGCTTGGTGATGACGGTCACGGGAAGGAGGGA
GAGGAGGTGAAGAGTTGTAAAAGTGTATAAGGCGAGTAACGGTTGTGTAG
CCCTTGCTATTTTCGAACGGTAAGGTAGGTAATATTTTAAACGGTACGGT
AAGTGTATATGCTTCCACGCATCTCGAGAGAGAAAGAAAATTGATAGGAC
TGTGTGGCTTGTTGGAGCGTTTGTCGGCTTTTCATACACTCATTATCTTG
GCGTTAGTAAGAGTAACGCTTGGGTGCGTGTGTAAATGACAATGTAGAGA
AAGGAAAATAAAGATAAAATATGACTGGCGAGGCGTTTCTTCT
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Coding sequence (CDS) from alignment at scaffold_1:1211431..1212673-

>mRNA_1675 ID=mRNA_1675|Name=jgi.p|Nanoce1779_2|573061|organism=Nannochloropsis oceanica|type=CDS|length=972bp|location=Sequence derived from alignment at scaffold_1:1211431..1212673- (Nannochloropsis oceanica)
ATGACTTCGCGATCGAGACAGTTATCTTCTTCTACAAGTGCAGGGAGCCA
AGAAGGTATCTTATCACCACCAAGACTCTCCTTGGCCGAAAGTAGCAATT
GTAATGTCAGTAGTACTTCCATTATTACATCAAGAAGCAGCACTACTTCT
CACTCTCTGCCACCCCTTCGTAACGGCCTCGCCCTGATTCGTCCCCCCGG
GCATCATGCGGAAGCGCACCATGCCCGTGGCTTCTGCCTTCTTAATAATG
TCGCGATCGCCGCTCAATTCGCCCGACAAAGGCTAGGTGTCAGCAAAATC
TTGATATGTGACTGGGACGTGCATCATGGGCAGGGTACCCAGCAGATGTT
CTGGAAGGATAAGTCTGTGCTATATTTCTCTGTGCATAGATATGACAATG
GAAGCTTTTTTCCGGGCACGGGCTCACCGAAAGGGGTAGGAGAGGGGGAG
GGAGAGGGTTACACAATAAATGTGGCATGGAATGAGGGAGGGATGGGGGA
CAGGGAGTACAGGGAGGTCTGGAGGAGGGTATTGTTGCCGGTAGCGAGGG
CATTTGAGCCGGAGTTGATTTTGGTGTCGGCGGGGTTCGACGGGGCAAAA
GGGGATGGAATGGGGGGATGTGAGGTTACTGGAAAGGGTGGATTTGGATG
GATGACGCAACGGCTGGTGCGGGAGGTAGAGAGCGCGCAGGGAAGGGTGG
TGTTGGCCCTGGAGGGAGGTTACAAATTGAGTGTGTTGGGGGAGTGCGTG
GAGGCTTGTTTGGGAGGTTTGATGGAGAAGGAAGGAGGAGAAGGTGGGGA
TGAGGAGACGAACGAGGATACTGAAGAGGAAGAGATTAGAGAGGAGGCGA
CAGAGGCGATTGCGAGGACGATTGCGGTGCACAGGAAGTACTGGCCATGT
TTGGGTGGGGGGCTTGGTGATGACGGTCACGGGAAGGAGGGAGAGGAGGT
GAAGAGTTGTAAAAGTGTATAA
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Synonyms
Publications