jgi.p|Nanoce1779_2|573059, mRNA_1674 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|573059
Unique Name	mRNA_1674
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1717
Alignment location	scaffold_1:1209519..1211235 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	573145
Track	FilteredModels2
ProteinId	573059

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_1	supercontig	scaffold_1:1209519..1211235 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|573059	gene_1674	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|573059	mRNA_1674-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_1674	CDS_1674	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_1:1209519..1211235+
coding sequence from alignment at scaffold_1:1209519..1211235+

mRNA sequence

>mRNA_1674 ID=mRNA_1674|Name=jgi.p|Nanoce1779_2|573059|organism=Nannochloropsis oceanica|type=mRNA|length=1717bp
CAGTCAAAGCCGGGGTCTGCTGCCGGCAGATGCCGGGCTTGAGAACGGCT
AGTCGAATCGCTCTCCTTCCATGCTTCGTCTTCATTCTCCTTTCGCAGCC
ACGTCCCTGCAGTTCCTTCTCCAGTCTGTGCCGCAGTTTTTTGCCTGACC
CTGGCGCGTTTTCAAACGAGGTCCAATGCAATGACAAAGGTATAAATTGG
CCACAGGATCGTCAATATTGCCTGCCGGAAAATTGGGGGCTGCAATGCGG
GGTAGGTTATCTAAGAAAGGATCGTCACTGGCTTGTAAAGGGAAGGACTT
CGGCACTCTCCTTCCCCTATCTCTTTATAGCTGAGAGCACACATCATGTG
TAATATAAGGCAGTGTATTACATCTTAAGATGTGCATCTCATCATCAACC
CCTTTCCTGCCTTCCCCCCATTTCAGACATGCCTCCAAACGTGCTACTTC
CTCCCCACCGTCAACAACACCGTCTTCATGCCCTTCAAGTACACCTTTCC
CTCCCTTGAATCGTTCGCACAGACCTGTGATACTCGCACTGTGGGTAAAA
GTTATAATGAGAGTACGCTGGGCATTTACTGTTGTCGGCCCTGCAAGCTC
TATCGCCTTGTCAACGAGCGCTGTGGCTCCATCCATTCCACCACGGCCGG
GCACGATCAAAGCTGCTTCCTTGAGAACACTACAACTCAAGCTGGTTTAC
CCATTCTCCGCACGCAAAGCAGTTTGGACAACACGGAGGCAAACCCTCAT
TGGCTTTTTATCCCTCCTACTCCGAACCGTGGGATTGAGGATGCGCGGAC
CAATGCCTCTATGTTTAAACAAGCCTGGCGTTTGGCCATGGACCCCTTAA
GCTACACCTCGCCTATAATTAAATATAGCAGCGGCAAGGGCGATAAGCGG
CAGCATTTTACCGCAAAATCTTTCATCTTCGACGACAAACAGGACGAAAT
GCAGCGGCATTATTTTAACACTTCAATTATTCCTGGCAAGATGGGGTTGA
CGAACGTGGCCATCGGCATCAATCAAGCCAATCACCGCTCGCAACACCAT
GCCCACATTCACTATGCGGCTTTTCCTATCTCCTTCCGCAAACATCTGCT
AGATCAAGCAAATGTGCCGCCATCCGCATCATCAGGACATCCAACGTGTA
CAGTAGCATCCGGCCTGAAATATGGTGAAAAGAACGTGACTTACTATGCG
TGGTTCTTTCCTTGGGACCTTGCAACTACTGCTGCGGGGGAAGAATCAGG
AGGAGGAAGTAGGGAGGAGAAAGTAGAAGGAACAGAAAGAGGAGGCGGGG
GAGGGGGAGGGATGTGGACGCTACGCGATCTGGCGTTGCGACAGTGTCCC
CCTCTGCTCGACACACTTGTCAAGGACATGGAGGGCAACACAATCGTCCG
CCCGCCTACACTCCCCTTCTCTCCACCTACCTCTAACCCTTTTCAGGGCG
ATGAAGATTTTTTGATGAGTCAAATTGCTGCAATCATCGCACCCTCTTTC
TCGCTCGATTCAAGCACGCAACGTCCTTCGGGTCACTACGTGTTAATGGG
GTCGACGAGTTCAAACTTTCATGCGGAGAGTTTGCTATGCACTCAATATG
GGACTGATGATGATAGTACAGGTGCTGGAGGTCAGCGAGGAGGAGGAGGA
GAAGGAAAAGGAGGGTGGGATCCCGTGACGGACTGTCCGGCTACTGCGGA
GGGTTGGCCGAAGCCGG

protein sequence of jgi.p|Nanoce1779_2|573059

>mRNA_1674-protein ID=mRNA_1674-protein|Name=jgi.p|Nanoce1779_2|573059|organism=Nannochloropsis oceanica|type=polypeptide|length=157bp
MCISSSTPFLPSPHFRHASKRATSSPPSTTPSSCPSSTPFPPLNRSHRPV
ILALWVKVIMRVRWAFTVVGPASSIALSTSAVAPSIPPRPGTIKAASLRT
LQLKLVYPFSARKAVWTTRRQTLIGFLSLLLRTVGLRMRGPMPLCLNKPG
VWPWTP*

mRNA from alignment at scaffold_1:1209519..1211235+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_1674 ID=mRNA_1674|Name=jgi.p|Nanoce1779_2|573059|organism=Nannochloropsis oceanica|type=mRNA|length=1717bp|location=Sequence derived from alignment at scaffold_1:1209519..1211235+ (Nannochloropsis oceanica)
CAGTCAAAGCCGGGGTCTGCTGCCGGCAGATGCCGGGCTTGAGAACGGCT
AGTCGAATCGCTCTCCTTCCATGCTTCGTCTTCATTCTCCTTTCGCAGCC
ACGTCCCTGCAGTTCCTTCTCCAGTCTGTGCCGCAGTTTTTTGCCTGACC
CTGGCGCGTTTTCAAACGAGGTCCAATGCAATGACAAAGGTATAAATTGG
CCACAGGATCGTCAATATTGCCTGCCGGAAAATTGGGGGCTGCAATGCGG
GGTAGGTTATCTAAGAAAGGATCGTCACTGGCTTGTAAAGGGAAGGACTT
CGGCACTCTCCTTCCCCTATCTCTTTATAGCTGAGAGCACACATCATGTG
TAATATAAGGCAGTGTATTACATCTTAAGATGTGCATCTCATCATCAACC
CCTTTCCTGCCTTCCCCCCATTTCAGACATGCCTCCAAACGTGCTACTTC
CTCCCCACCGTCAACAACACCGTCTTCATGCCCTTCAAGTACACCTTTCC
CTCCCTTGAATCGTTCGCACAGACCTGTGATACTCGCACTGTGGGTAAAA
GTTATAATGAGAGTACGCTGGGCATTTACTGTTGTCGGCCCTGCAAGCTC
TATCGCCTTGTCAACGAGCGCTGTGGCTCCATCCATTCCACCACGGCCGG
GCACGATCAAAGCTGCTTCCTTGAGAACACTACAACTCAAGCTGGTTTAC
CCATTCTCCGCACGCAAAGCAGTTTGGACAACACGGAGGCAAACCCTCAT
TGGCTTTTTATCCCTCCTACTCCGAACCGTGGGATTGAGGATGCGCGGAC
CAATGCCTCTATGTTTAAACAAGCCTGGCGTTTGGCCATGGACCCCTTAA
GCTACACCTCGCCTATAATTAAATATAGCAGCGGCAAGGGCGATAAGCGG
CAGCATTTTACCGCAAAATCTTTCATCTTCGACGACAAACAGGACGAAAT
GCAGCGGCATTATTTTAACACTTCAATTATTCCTGGCAAGATGGGGTTGA
CGAACGTGGCCATCGGCATCAATCAAGCCAATCACCGCTCGCAACACCAT
GCCCACATTCACTATGCGGCTTTTCCTATCTCCTTCCGCAAACATCTGCT
AGATCAAGCAAATGTGCCGCCATCCGCATCATCAGGACATCCAACGTGTA
CAGTAGCATCCGGCCTGAAATATGGTGAAAAGAACGTGACTTACTATGCG
TGGTTCTTTCCTTGGGACCTTGCAACTACTGCTGCGGGGGAAGAATCAGG
AGGAGGAAGTAGGGAGGAGAAAGTAGAAGGAACAGAAAGAGGAGGCGGGG
GAGGGGGAGGGATGTGGACGCTACGCGATCTGGCGTTGCGACAGTGTCCC
CCTCTGCTCGACACACTTGTCAAGGACATGGAGGGCAACACAATCGTCCG
CCCGCCTACACTCCCCTTCTCTCCACCTACCTCTAACCCTTTTCAGGGCG
ATGAAGATTTTTTGATGAGTCAAATTGCTGCAATCATCGCACCCTCTTTC
TCGCTCGATTCAAGCACGCAACGTCCTTCGGGTCACTACGTGTTAATGGG
GTCGACGAGTTCAAACTTTCATGCGGAGAGTTTGCTATGCACTCAATATG
GGACTGATGATGATAGTACAGGTGCTGGAGGTCAGCGAGGAGGAGGAGGA
GAAGGAAAAGGAGGGTGGGATCCCGTGACGGACTGTCCGGCTACTGCGGA
GGGTTGGCCGAAGCCGG

Coding sequence (CDS) from alignment at scaffold_1:1209519..1211235+

>mRNA_1674 ID=mRNA_1674|Name=jgi.p|Nanoce1779_2|573059|organism=Nannochloropsis oceanica|type=CDS|length=471bp|location=Sequence derived from alignment at scaffold_1:1209519..1211235+ (Nannochloropsis oceanica)
ATGTGCATCTCATCATCAACCCCTTTCCTGCCTTCCCCCCATTTCAGACA
TGCCTCCAAACGTGCTACTTCCTCCCCACCGTCAACAACACCGTCTTCAT
GCCCTTCAAGTACACCTTTCCCTCCCTTGAATCGTTCGCACAGACCTGTG
ATACTCGCACTGTGGGTAAAAGTTATAATGAGAGTACGCTGGGCATTTAC
TGTTGTCGGCCCTGCAAGCTCTATCGCCTTGTCAACGAGCGCTGTGGCTC
CATCCATTCCACCACGGCCGGGCACGATCAAAGCTGCTTCCTTGAGAACA
CTACAACTCAAGCTGGTTTACCCATTCTCCGCACGCAAAGCAGTTTGGAC
AACACGGAGGCAAACCCTCATTGGCTTTTTATCCCTCCTACTCCGAACCG
TGGGATTGAGGATGCGCGGACCAATGCCTCTATGTTTAAACAAGCCTGGC
GTTTGGCCATGGACCCCTTAA

Synonyms

Publications