jgi.p|Nanoce1779_2|576429, mRNA_167 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|576429
Unique Name	mRNA_167
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	966
Alignment location	scaffold_3:429447..430412 +

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Properties


Property Name	Value
TranscriptId	576515
Track	FilteredModels2
ProteinId	576429

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_3	supercontig	scaffold_3:429447..430412 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|576429	gene_167	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|576429	mRNA_167-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_167	CDS_167	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_3:429447..430412+
coding sequence from alignment at scaffold_3:429447..430412+

mRNA sequence

>mRNA_167 ID=mRNA_167|Name=jgi.p|Nanoce1779_2|576429|organism=Nannochloropsis oceanica|type=mRNA|length=966bp
GGAGATTTTGCCACCTCTGCCGGTGTCATCATCTCCGGCTCCCTCTCAAA
CTAAAGCTGACTACCATGGAGCTGAGCACGACGCTGATTCAATTCCTCAA
GCGCCTTCCCGCCACCTGCCAGGCACCGCCACAATATCCGGCATCATCCA
AGTACGGAACCACACCTTGCGGTACTCTGCTCCATCTAGCTTCTTGAGAT
TGAAGAACGGTAACATGGGAAGCCTTAGCAGCAACCCAGAAGCTCAACTA
TTCATTCCGCCAGCCTTTGGCGTCACGGTGCTGTGCTCGTCGCATAGCTT
CGACAGCAAGGGCTCAACGAGTGGGTATGTCCTTTGGATCGGTCGTCGAG
GTATTATGATCGATCCTCCGCCACATTCCTCGTCTCTATCACAGAAGCAG
CAGATCCATCCCTCTGTCATTGATGGAGTCCTTTTGACGCACTGTCGTGC
GGATCATGACGCGGGAACCTTTCAGAAGCTCTTGTGCGAAAAACGCATCA
CTCTATACACCACTCTGACAATTTATGAGTCTTTCATTCGCAAGTATTCC
GCCTTGTCTGGCACTGATGCCGAATTCCTAAAAACCACTCACCACTTCCG
TCAAAGTCGGTGAGCAAGAAATGCGCTTGCGAGGTGCCTCGTTCAATTTT
TTCTACTCCCTACACTCTATTCCCTGCATCGGGCTCGAGGTCTTCTTCGC
TGGTAAAAGTATTATATTTAGCGCAGATCACTGCAATGACCCAATGCGGA
TCGAGCAGATGCACGTCGAGGGCGTCTCGAGCGCGGGCAGACGGACAGAG
CTCCTGAACTTTCCTTGGGACCACGACATGAAGCTGGCGTTCCTCCAATC
CACACACCTCTTGCGACGCTTGAAGCATTGGACGACGATATTAAAGAAAA
GATGTACCTGGTGCACGTGTCGGAAGGTGCAGTACCAAAGGGATCCAAGC
TCAAGGTCGCACCTGT

protein sequence of jgi.p|Nanoce1779_2|576429

>mRNA_167-protein ID=mRNA_167-protein|Name=jgi.p|Nanoce1779_2|576429|organism=Nannochloropsis oceanica|type=polypeptide|length=133bp
MGSLSSNPEAQLFIPPAFGVTVLCSSHSFDSKGSTSGYVLWIGRRGIMID
PPPHSSSLSQKQQIHPSVIDGVLLTHCRADHDAGTFQKLLCEKRITLYTT
LTIYESFIRKYSALSGTDAEFLKTTHHFRQSR*

mRNA from alignment at scaffold_3:429447..430412+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_167 ID=mRNA_167|Name=jgi.p|Nanoce1779_2|576429|organism=Nannochloropsis oceanica|type=mRNA|length=966bp|location=Sequence derived from alignment at scaffold_3:429447..430412+ (Nannochloropsis oceanica)
GGAGATTTTGCCACCTCTGCCGGTGTCATCATCTCCGGCTCCCTCTCAAA
CTAAAGCTGACTACCATGGAGCTGAGCACGACGCTGATTCAATTCCTCAA
GCGCCTTCCCGCCACCTGCCAGGCACCGCCACAATATCCGGCATCATCCA
AGTACGGAACCACACCTTGCGGTACTCTGCTCCATCTAGCTTCTTGAGAT
TGAAGAACGGTAACATGGGAAGCCTTAGCAGCAACCCAGAAGCTCAACTA
TTCATTCCGCCAGCCTTTGGCGTCACGGTGCTGTGCTCGTCGCATAGCTT
CGACAGCAAGGGCTCAACGAGTGGGTATGTCCTTTGGATCGGTCGTCGAG
GTATTATGATCGATCCTCCGCCACATTCCTCGTCTCTATCACAGAAGCAG
CAGATCCATCCCTCTGTCATTGATGGAGTCCTTTTGACGCACTGTCGTGC
GGATCATGACGCGGGAACCTTTCAGAAGCTCTTGTGCGAAAAACGCATCA
CTCTATACACCACTCTGACAATTTATGAGTCTTTCATTCGCAAGTATTCC
GCCTTGTCTGGCACTGATGCCGAATTCCTAAAAACCACTCACCACTTCCG
TCAAAGTCGGTGAGCAAGAAATGCGCTTGCGAGGTGCCTCGTTCAATTTT
TTCTACTCCCTACACTCTATTCCCTGCATCGGGCTCGAGGTCTTCTTCGC
TGGTAAAAGTATTATATTTAGCGCAGATCACTGCAATGACCCAATGCGGA
TCGAGCAGATGCACGTCGAGGGCGTCTCGAGCGCGGGCAGACGGACAGAG
CTCCTGAACTTTCCTTGGGACCACGACATGAAGCTGGCGTTCCTCCAATC
CACACACCTCTTGCGACGCTTGAAGCATTGGACGACGATATTAAAGAAAA
GATGTACCTGGTGCACGTGTCGGAAGGTGCAGTACCAAAGGGATCCAAGC
TCAAGGTCGCACCTGT

Coding sequence (CDS) from alignment at scaffold_3:429447..430412+

>mRNA_167 ID=mRNA_167|Name=jgi.p|Nanoce1779_2|576429|organism=Nannochloropsis oceanica|type=CDS|length=399bp|location=Sequence derived from alignment at scaffold_3:429447..430412+ (Nannochloropsis oceanica)
ATGGGAAGCCTTAGCAGCAACCCAGAAGCTCAACTATTCATTCCGCCAGC
CTTTGGCGTCACGGTGCTGTGCTCGTCGCATAGCTTCGACAGCAAGGGCT
CAACGAGTGGGTATGTCCTTTGGATCGGTCGTCGAGGTATTATGATCGAT
CCTCCGCCACATTCCTCGTCTCTATCACAGAAGCAGCAGATCCATCCCTC
TGTCATTGATGGAGTCCTTTTGACGCACTGTCGTGCGGATCATGACGCGG
GAACCTTTCAGAAGCTCTTGTGCGAAAAACGCATCACTCTATACACCACT
CTGACAATTTATGAGTCTTTCATTCGCAAGTATTCCGCCTTGTCTGGCAC
TGATGCCGAATTCCTAAAAACCACTCACCACTTCCGTCAAAGTCGGTGA

Synonyms

Publications