jgi.p|Nanoce1779_2|13668, mRNA_1669 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|13668
Unique NamemRNA_1669
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length844
Alignment locationscaffold_1:1201214..1202169 -

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Properties
Property NameValue
TranscriptId13754
TrackFilteredModels2
ProteinId13668
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_1supercontigscaffold_1:1201214..1202169 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|13668gene_1669Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|13668mRNA_1669-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1669CDS_1669Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1669 ID=mRNA_1669|Name=jgi.p|Nanoce1779_2|13668|organism=Nannochloropsis oceanica|type=mRNA|length=844bp
TACCTCCTGCCTCTTCTTACTTTGATCAAACGGATTTTTAAACTGGACGG
AGCCGTTGGGATGAGTGCGCCGTATTTTTTGTGTATGTCTTTGTGCCCCG
CGGGCAAGTGCCACACGTATATTAACGACCCGACATAGCCTTTCTTCTAA
TCACATTCTGACGCCTATAGTCCCGCCATACTAAACCCAGAGCCATCTCC
ACTTAAAAACTACATAAATCAGGTTAACAGTCGCCTTCAACATTTGTTCC
TCGCTTGCTTCTCCCCTTCCCCCCTGCGCGCGCACCCCACGCCCCACATA
CACACAACAAGCTATACACGACCATGGAGATCGATTTCCCAACATTTTGC
GTCCTGTTTTTCTTGGCCTCAATCCTCCTGGCTTTTGTGGAGCTGGCAAT
CAAGAGCAAACCCATCTCCCAGGCCGACTACGAAAAGACCTACGGCATAC
CTCCGGGACTCGACAGCCTCAATTACCAGAACGGGGAGTGGAGGCACAAG
CCCACCGGCCGGCTGGCAACCAAAAGTGAGGTGGAATGCGCGGGGCTGGT
CTGGCCCACGACGCCGGTCGGAAGCAAGAGCAGGACACGCAGCTCGACTA
CAGGGAATTTGGAGACTGCCCCAGGCAACAAGAAGGACGACTAAGCTAGC
TAGGACTGTCAGGGATTACGGCTGGCTGAGGATGACGAGGCATGAAGGCC
GTCATTCCCTCTCTCTCTCCTAGGCAAATACATAGGAACACAAAGATACG
TACACAGGACACGCAATCAATTCTCATACACACCTACAGATGATTCCTTT
CTGCGAGTTATTTTGTATTTACACTCTTTTCTTTTTGTCCCCAC
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protein sequence of jgi.p|Nanoce1779_2|13668

>mRNA_1669-protein ID=mRNA_1669-protein|Name=jgi.p|Nanoce1779_2|13668|organism=Nannochloropsis oceanica|type=polypeptide|length=107bp
MEIDFPTFCVLFFLASILLAFVELAIKSKPISQADYEKTYGIPPGLDSLN
YQNGEWRHKPTGRLATKSEVECAGLVWPTTPVGSKSRTRSSTTGNLETAP
GNKKDD*
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mRNA from alignment at scaffold_1:1201214..1202169-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1669 ID=mRNA_1669|Name=jgi.p|Nanoce1779_2|13668|organism=Nannochloropsis oceanica|type=mRNA|length=956bp|location=Sequence derived from alignment at scaffold_1:1201214..1202169- (Nannochloropsis oceanica)
TACCTCCTGCCTCTTCTTACTTTGATCAAACGGATTTTTAAACTGGACGG
AGCCGTTGGGATGAGTGCGCCGTATTTTTTGTGTATGTCTTTGTGCCCCG
CGGGCAAGTGCCACACGTATATTAACGACCCGACATAGCCTTTCTTCTAA
TCACATTCTGACGCCTATAGTCCCGCCATACTAAACCCAGAGCCATCTCC
ACTTAAAAACTACATAAATCAGGTTAACAGTCGCCTTCAACATTTGTTCC
TCGCTTGCTTCTCCCCTTCCCCCCTGCGCGCGCACCCCACGCCCCACATA
CACACAACAAGCTATACACGACCATGGAGATCGATTTCCCAACATTTTGC
GTCCTGTTTTTCTTGGCCTCAATCCTCCTGGCTTTTGTGGAGCTGGCAAT
CAAGAGCAAACCCATCTCCCAGGCCGACTACGAAAAGACCTACGGCATAC
CTCCGGGACTCGACAGCCTCAATTACCAGAACGGGGAGTGGAGGCACAAG
CCCACCGGCCGGCTGGCAACCAAAAGTGAGGTGGAATGCGCGGGGCTGGT
CTGGCCCACGACGCCGGTCGGAAGCAAGAGCAGGACACGCAGCTCGACTA
CAGGGAATTTGGAGACTGCCCCAGGCAACAAGAAGGACGACTAAGCTAGC
TAGGACGTAAGAAATAAATAGGGAGGGGGTGAAGAATCGCAAAACAAAAA
GCTGCACATTGAGTGATGATCGATGTGTCTTATTCTTCTCTCTTTTTCAA
CCATTGTCTTGTTGGTAGTGTCAGGGATTACGGCTGGCTGAGGATGACGA
GGCATGAAGGCCGTCATTCCCTCTCTCTCTCCTAGGCAAATACATAGGAA
CACAAAGATACGTACACAGGACACGCAATCAATTCTCATACACACCTACA
GATGATTCCTTTCTGCGAGTTATTTTGTATTTACACTCTTTTCTTTTTGT
CCCCAC
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Coding sequence (CDS) from alignment at scaffold_1:1201214..1202169-

>mRNA_1669 ID=mRNA_1669|Name=jgi.p|Nanoce1779_2|13668|organism=Nannochloropsis oceanica|type=CDS|length=321bp|location=Sequence derived from alignment at scaffold_1:1201214..1202169- (Nannochloropsis oceanica)
ATGGAGATCGATTTCCCAACATTTTGCGTCCTGTTTTTCTTGGCCTCAAT
CCTCCTGGCTTTTGTGGAGCTGGCAATCAAGAGCAAACCCATCTCCCAGG
CCGACTACGAAAAGACCTACGGCATACCTCCGGGACTCGACAGCCTCAAT
TACCAGAACGGGGAGTGGAGGCACAAGCCCACCGGCCGGCTGGCAACCAA
AAGTGAGGTGGAATGCGCGGGGCTGGTCTGGCCCACGACGCCGGTCGGAA
GCAAGAGCAGGACACGCAGCTCGACTACAGGGAATTTGGAGACTGCCCCA
GGCAACAAGAAGGACGACTAA
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Synonyms
Publications