jgi.p|Nanoce1779_2|573042, mRNA_1667 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|573042
Unique Name	mRNA_1667
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	859
Alignment location	scaffold_1:1196727..1197972 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	573128
Track	FilteredModels2
ProteinId	573042

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_1	supercontig	scaffold_1:1196727..1197972 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|573042	gene_1667	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|573042	mRNA_1667-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_1667	CDS_1667	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_1:1196727..1197972+
coding sequence from alignment at scaffold_1:1196727..1197972+

mRNA sequence

>mRNA_1667 ID=mRNA_1667|Name=jgi.p|Nanoce1779_2|573042|organism=Nannochloropsis oceanica|type=mRNA|length=859bp
AGGTACGCTTCTCCTAGACAAGACATGGTTGCGCGCCAGGTTTCGCTCGT
GACAGGAGAAGGCAGGTCCAAGGGCAAGGGTAGTCGCCGCAGCAAATTAC
ATGCCATTTCAGTGGACATAATTACGAACAAGAAAGTTGCCTGCAGCAGT
GCCAAGAAAAAGCTGAAGCCCTCCACCACTAGGCGCCGTGTCACCATTGT
GGCAAGCAAGCAATCCTCCAGGCTCAACGTCGATGCCGCCCAAAGTGACA
ACACGCGGAAAGTGGTGATGACTGTTCTGAAATCCGGTAGCAGTGGGAGT
ACAAACATTAATAGCGCTGTCCAACTGCACGTAAAACCCCGGGTGGTAGT
CAACACCACTAAGAATCTGGAAGTTGGAAGAGCGGTATTTCACGGTGATC
AAAAGATGTTACAGAAGGACGTCACAAATCACAAGATCAGTGGGATGGCC
GCGGCACGTTTACGGGGAGCGGCTGGAGCAGTCCGAGGCGGAGGGAAGGT
CAGCAACATGACCAGCAGCAGCAAAAACACTGCGATAGGAAAAAGCAGTG
TAAACAACAGGAGTAGTAGCAACAACAGCAGCAGCAAGAGTACCACGGCG
TTGGCGACAGCCAAGTTGATCGTGTCGGCAGGGAGCCACCCCAAGAATTC
GGACATCAAGCAGTTACTGGGCGCGTACGAGAAGGGATGGGTGGCAGATA
AGACCTTCGCGCTGGAGCTCCAGAGACTGCTCGTCTGAATCTTTGAACGG
GGGTGGAAATAGGGGGGAGTGATCATGAAAGAGAGGGGGCATGTGCATAG
CAGCAAATAAAGTCCGATACTGGCAGCTCCATAAATTCAAGCAAAGAAGA
AGCAATGTG

protein sequence of jgi.p|Nanoce1779_2|573042

>mRNA_1667-protein ID=mRNA_1667-protein|Name=jgi.p|Nanoce1779_2|573042|organism=Nannochloropsis oceanica|type=polypeptide|length=238bp
MVARQVSLVTGEGRSKGKGSRRSKLHAISVDIITNKKVACSSAKKKLKPS
TTRRRVTIVASKQSSRLNVDAAQSDNTRKVVMTVLKSGSSGSTNINSAVQ
LHVKPRVVVNTTKNLEVGRAVFHGDQKMLQKDVTNHKISGMAAARLRGAA
GAVRGGGKVSNMTSSSKNTAIGKSSVNNRSSSNNSSSKSTTALATAKLIV
SAGSHPKNSDIKQLLGAYEKGWVADKTFALELQRLLV*

mRNA from alignment at scaffold_1:1196727..1197972+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_1667 ID=mRNA_1667|Name=jgi.p|Nanoce1779_2|573042|organism=Nannochloropsis oceanica|type=mRNA|length=1246bp|location=Sequence derived from alignment at scaffold_1:1196727..1197972+ (Nannochloropsis oceanica)
AGGTACGCTTCTCCTAGACAAGACATGGTTGCGCGCCAGGTTTCGCTCGT
GACAGGTAAGTCGTGTGCGGAGAGTAACAATGATGATAAAGCTGCCGTTC
TGCCTCATATGCTTCCCTCCCACCAGGAGAAGGCAGGTCCAAGGGCAAGG
GTAGTCGCCGCAGCAAATTACATGCCATTTCAGTGGACATAATTACGAAC
AAGAAAGTTGCCTGCAGCAGTGCCAAGAAAAAGCTGAAGCCCTCCACCAC
TAGGCGCCGTGTCACCATTGTGGCAAGGTAAGTCCCGGGGGCCTGGAAGT
CAAAAAGCTTTCCGCCGATGAGTCGCAGACACGCCAGCAATGCGACATTC
CTTTCGACTCTTCGTTTCTACTTGAGAGCGCCATTGTATGTGCTAAATCT
AGAGCGTAGCACGCCTTCCCAATAATCCCCCAAAAAGTGTCCTTTCGTTC
GCGTTCGTGTTCTTACATCCACGCGTTCCCCTTACAAACATACAGCAAGC
AATCCTCCAGGCTCAACGTCGATGCCGCCCAAAGTGACAACACGCGGAAA
GTGGTGATGACTGTTCTGAAATCCGGTAGCAGTGGGAGTACAAACATTAA
TAGCGCTGTCCAACTGCACGTAAAACCCCGGGTGGTAGTCAACACCACTA
AGAATCTGGAAGTTGGAAGAGCGGTATTTCACGGTGATCAAAAGATGTTA
CAGAAGGACGTCACAAATCACAAGATCAGTGGGATGGCCGCGGCACGTTT
ACGGGGAGCGGCTGGAGCAGTCCGAGGCGGAGGGAAGGTCAGCAACATGA
CCAGCAGCAGCAAAAACACTGCGATAGGAAAAAGCAGTGTAAACAACAGG
AGTAGTAGCAACAACAGCAGCAGCAAGAGTACCACGGCGTTGGCGACAGC
CAAGTTGATCGTGTCGGCAGGGAGCCACCCCAAGAATTCGGACATCAAGC
AGGTGCGTCTTGGGGCACATGGTAACCCGGGGAGAGGAGGTTAGATTTTT
CAAAATCACATCATGACTGGCATTATTTCACACACAAATATCCTAAACAG
TTACTGGGCGCGTACGAGAAGGGATGGGTGGCAGATAAGACCTTCGCGCT
GGAGCTCCAGAGACTGCTCGTCTGAATCTTTGAACGGGGGTGGAAATAGG
GGGGAGTGATCATGAAAGAGAGGGGGCATGTGCATAGCAGCAAATAAAGT
CCGATACTGGCAGCTCCATAAATTCAAGCAAAGAAGAAGCAATGTG

Coding sequence (CDS) from alignment at scaffold_1:1196727..1197972+

>mRNA_1667 ID=mRNA_1667|Name=jgi.p|Nanoce1779_2|573042|organism=Nannochloropsis oceanica|type=CDS|length=2856bp|location=Sequence derived from alignment at scaffold_1:1196727..1197972+ (Nannochloropsis oceanica)
ATGGTTGCGCGCCAGGTTTCGCTCGTGACAGGAGAAGGCAGGTCCAAGGG
CAAGGGTAGTCGCCGCAGCAAATTACATGCCATTTCAGTGGACATAATTA
CGAACAAGAAAGTTGCCTGCAGCAGTGCCAAGAAAAAGCTGAAGCCCTCC
ACCACTAGGCGCCGTGTCACCATTGTGGCAAGCAAGCAATCCTCCAGGCT
CAACGTCGATGCCGCCCAAAGTGACAACACGCGGAAAGTGGTGATGACTG
TTCTGAAATCCGGTAGCAGTGGGAGTACAAACATTAATAGCGCTGTCCAA
CTGCACGTAAAACCCCGGGTGGTAGTCAACACCACTAAGAATCTGGAAGT
TGGAAGAGCGGTATTTCACGGTGATCAAAAGATGTTACAGAAGGACGTCA
CAAATCACAAGATCAGTGGGATGGCCGCGGCACGTTTACGGGGAGCGGCT
GGAGCAGTCCGAGGCGGAGGGAAGGTCAGCAACATGACCAGCAGCAGCAA
AAACACTGCGATAGGAAAAAGCAGTGTAAACAACAGGAGTAGTAGCAACA
ACAGCAGCAGCAAGAGTACCACGGCGTTGGCGACAGCCAAGTTGATCGTG
TCGGCAGGGAGCCACCCCAAGAATTCGGACATCAAGCAGTTACTGGGCGC
GTACGAGAAGGGATGGGTGGCAGATAAGACCTTCGCGCTGGAGCTCCAGA
GACTGCTCGTCTGAATGGTTGCGCGCCAGGTTTCGCTCGTGACAGGAGAA
GGCAGGTCCAAGGGCAAGGGTAGTCGCCGCAGCAAATTACATGCCATTTC
AGTGGACATAATTACGAACAAGAAAGTTGCCTGCAGCAGTGCCAAGAAAA
AGCTGAAGCCCTCCACCACTAGGCGCCGTGTCACCATTGTGGCAAGCAAG
CAATCCTCCAGGCTCAACGTCGATGCCGCCCAAAGTGACAACACGCGGAA
AGTGGTGATGACTGTTCTGAAATCCGGTAGCAGTGGGAGTACAAACATTA
ATAGCGCTGTCCAACTGCACGTAAAACCCCGGGTGGTAGTCAACACCACT
AAGAATCTGGAAGTTGGAAGAGCGGTATTTCACGGTGATCAAAAGATGTT
ACAGAAGGACGTCACAAATCACAAGATCAGTGGGATGGCCGCGGCACGTT
TACGGGGAGCGGCTGGAGCAGTCCGAGGCGGAGGGAAGGTCAGCAACATG
ACCAGCAGCAGCAAAAACACTGCGATAGGAAAAAGCAGTGTAAACAACAG
GAGTAGTAGCAACAACAGCAGCAGCAAGAGTACCACGGCGTTGGCGACAG
CCAAGTTGATCGTGTCGGCAGGGAGCCACCCCAAGAATTCGGACATCAAG
CAGTTACTGGGCGCGTACGAGAAGGGATGGGTGGCAGATAAGACCTTCGC
GCTGGAGCTCCAGAGACTGCTCGTCTGAATGGTTGCGCGCCAGGTTTCGC
TCGTGACAGGAGAAGGCAGGTCCAAGGGCAAGGGTAGTCGCCGCAGCAAA
TTACATGCCATTTCAGTGGACATAATTACGAACAAGAAAGTTGCCTGCAG
CAGTGCCAAGAAAAAGCTGAAGCCCTCCACCACTAGGCGCCGTGTCACCA
TTGTGGCAAGCAAGCAATCCTCCAGGCTCAACGTCGATGCCGCCCAAAGT
GACAACACGCGGAAAGTGGTGATGACTGTTCTGAAATCCGGTAGCAGTGG
GAGTACAAACATTAATAGCGCTGTCCAACTGCACGTAAAACCCCGGGTGG
TAGTCAACACCACTAAGAATCTGGAAGTTGGAAGAGCGGTATTTCACGGT
GATCAAAAGATGTTACAGAAGGACGTCACAAATCACAAGATCAGTGGGAT
GGCCGCGGCACGTTTACGGGGAGCGGCTGGAGCAGTCCGAGGCGGAGGGA
AGGTCAGCAACATGACCAGCAGCAGCAAAAACACTGCGATAGGAAAAAGC
AGTGTAAACAACAGGAGTAGTAGCAACAACAGCAGCAGCAAGAGTACCAC
GGCGTTGGCGACAGCCAAGTTGATCGTGTCGGCAGGGAGCCACCCCAAGA
ATTCGGACATCAAGCAGTTACTGGGCGCGTACGAGAAGGGATGGGTGGCA
GATAAGACCTTCGCGCTGGAGCTCCAGAGACTGCTCGTCTGAATGGTTGC
GCGCCAGGTTTCGCTCGTGACAGGAGAAGGCAGGTCCAAGGGCAAGGGTA
GTCGCCGCAGCAAATTACATGCCATTTCAGTGGACATAATTACGAACAAG
AAAGTTGCCTGCAGCAGTGCCAAGAAAAAGCTGAAGCCCTCCACCACTAG
GCGCCGTGTCACCATTGTGGCAAGCAAGCAATCCTCCAGGCTCAACGTCG
ATGCCGCCCAAAGTGACAACACGCGGAAAGTGGTGATGACTGTTCTGAAA
TCCGGTAGCAGTGGGAGTACAAACATTAATAGCGCTGTCCAACTGCACGT
AAAACCCCGGGTGGTAGTCAACACCACTAAGAATCTGGAAGTTGGAAGAG
CGGTATTTCACGGTGATCAAAAGATGTTACAGAAGGACGTCACAAATCAC
AAGATCAGTGGGATGGCCGCGGCACGTTTACGGGGAGCGGCTGGAGCAGT
CCGAGGCGGAGGGAAGGTCAGCAACATGACCAGCAGCAGCAAAAACACTG
CGATAGGAAAAAGCAGTGTAAACAACAGGAGTAGTAGCAACAACAGCAGC
AGCAAGAGTACCACGGCGTTGGCGACAGCCAAGTTGATCGTGTCGGCAGG
GAGCCACCCCAAGAATTCGGACATCAAGCAGTTACTGGGCGCGTACGAGA
AGGGATGGGTGGCAGATAAGACCTTCGCGCTGGAGCTCCAGAGACTGCTC
GTCTGA

Synonyms

Publications