jgi.p|Nanoce1779_2|521987, mRNA_1666 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|521987
Unique NamemRNA_1666
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length303
Alignment locationscaffold_1:1195770..1196371 -

Link to JBrowse

Properties
Property NameValue
TranscriptId522073
TrackFilteredModels2
ProteinId521987
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_1supercontigscaffold_1:1195770..1196371 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|521987gene_1666Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|521987mRNA_1666-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1666CDS_1666Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1666 ID=mRNA_1666|Name=jgi.p|Nanoce1779_2|521987|organism=Nannochloropsis oceanica|type=mRNA|length=303bp
TCGCAGGTCGAAGAGACCATTGAGCGAATCAAGATTAAGCAAGGTATCGA
AGGGTACGTCATAACTAACAAGAAAGGCCAAGTCCTCCGCCGCTTCCATA
CTATGAGCGAGGAAAGGGCAGACGCTATGGCAGCCACCGTGCGGCAGCTA
GCCCTCAAAGCCCAAAATGTTGCTCGGGACCTGGACCCTTCGAATGAATT
TCAATATCTGCGCATAAAGACGAAGAAGCATGAGGTGATCGCCGCCATCG
ATAACGAGTTCCTGGTGACGGTCCTCCAGCGATGGACGCCTTCCAGCGCC
TGA
back to top

protein sequence of jgi.p|Nanoce1779_2|521987

>mRNA_1666-protein ID=mRNA_1666-protein|Name=jgi.p|Nanoce1779_2|521987|organism=Nannochloropsis oceanica|type=polypeptide|length=101bp
SQVEETIERIKIKQGIEGYVITNKKGQVLRRFHTMSEERADAMAATVRQL
ALKAQNVARDLDPSNEFQYLRIKTKKHEVIAAIDNEFLVTVLQRWTPSSA
*
back to top

mRNA from alignment at scaffold_1:1195770..1196371-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1666 ID=mRNA_1666|Name=jgi.p|Nanoce1779_2|521987|organism=Nannochloropsis oceanica|type=mRNA|length=602bp|location=Sequence derived from alignment at scaffold_1:1195770..1196371- (Nannochloropsis oceanica)
TCGCAGGTCGAAGAGACCATTGAGCGAATCAAGATTAAGCAAGGTATCGA
AGGGTACGTGGATGTGTCAGCTCAATTCTGGCAGTACCTGTGTTTAATTT
ATTCTATGCTTACCATCCTCTCAGGTACGTCATAACTAACAAGAAAGGCC
AAGTCCTCCGCCGCTTCCATACTATGAGCGAGGAAAGGGCAGACGCTATG
GCAGCCACCGTGCGGCAGCTAGCCCTCAAAGCCCAAAATGTTGCTCGGGA
CCTGGACCCTTCGGTGAGTCTTTGTGTGCGTATACATATATATACATGTA
GATATGAGTGTGGCCACTGGATTGCCTGTCAGGGGTACTTGGCGCCTAGC
AAATTATCCCACTTTCTTCTGTCACACAACTGCCCTCTCTCTTATTTTGG
TCCACAGAATGAATTTCAATATCTGCGCATAAAGACGAAGAAGCATGAGG
TGATCGCCGCCATCGGTAGGTAAACGTTTTTGACCTCATCAAAGACGTGC
CACCCGACACATTATCTCACATGTTCCTCCGACCGCCACCCTCCTATAGA
TAACGAGTTCCTGGTGACGGTCCTCCAGCGATGGACGCCTTCCAGCGCCT
GA
back to top

Coding sequence (CDS) from alignment at scaffold_1:1195770..1196371-

>mRNA_1666 ID=mRNA_1666|Name=jgi.p|Nanoce1779_2|521987|organism=Nannochloropsis oceanica|type=CDS|length=1212bp|location=Sequence derived from alignment at scaffold_1:1195770..1196371- (Nannochloropsis oceanica)
ATAACGAGTTCCTGGTGACGGTCCTCCAGCGATGGACGCCTTCCAGCGCC
TGAAATGAATTTCAATATCTGCGCATAAAGACGAAGAAGCATGAGGTGAT
CGCCGCCATCGGTACGTCATAACTAACAAGAAAGGCCAAGTCCTCCGCCG
CTTCCATACTATGAGCGAGGAAAGGGCAGACGCTATGGCAGCCACCGTGC
GGCAGCTAGCCCTCAAAGCCCAAAATGTTGCTCGGGACCTGGACCCTTCG
TCGCAGGTCGAAGAGACCATTGAGCGAATCAAGATTAAGCAAGGTATCGA
AGGATAACGAGTTCCTGGTGACGGTCCTCCAGCGATGGACGCCTTCCAGC
GCCTGAAATGAATTTCAATATCTGCGCATAAAGACGAAGAAGCATGAGGT
GATCGCCGCCATCGGTACGTCATAACTAACAAGAAAGGCCAAGTCCTCCG
CCGCTTCCATACTATGAGCGAGGAAAGGGCAGACGCTATGGCAGCCACCG
TGCGGCAGCTAGCCCTCAAAGCCCAAAATGTTGCTCGGGACCTGGACCCT
TCGTCGCAGGTCGAAGAGACCATTGAGCGAATCAAGATTAAGCAAGGTAT
CGAAGGATAACGAGTTCCTGGTGACGGTCCTCCAGCGATGGACGCCTTCC
AGCGCCTGAAATGAATTTCAATATCTGCGCATAAAGACGAAGAAGCATGA
GGTGATCGCCGCCATCGGTACGTCATAACTAACAAGAAAGGCCAAGTCCT
CCGCCGCTTCCATACTATGAGCGAGGAAAGGGCAGACGCTATGGCAGCCA
CCGTGCGGCAGCTAGCCCTCAAAGCCCAAAATGTTGCTCGGGACCTGGAC
CCTTCGTCGCAGGTCGAAGAGACCATTGAGCGAATCAAGATTAAGCAAGG
TATCGAAGGATAACGAGTTCCTGGTGACGGTCCTCCAGCGATGGACGCCT
TCCAGCGCCTGAAATGAATTTCAATATCTGCGCATAAAGACGAAGAAGCA
TGAGGTGATCGCCGCCATCGGTACGTCATAACTAACAAGAAAGGCCAAGT
CCTCCGCCGCTTCCATACTATGAGCGAGGAAAGGGCAGACGCTATGGCAG
CCACCGTGCGGCAGCTAGCCCTCAAAGCCCAAAATGTTGCTCGGGACCTG
GACCCTTCGTCGCAGGTCGAAGAGACCATTGAGCGAATCAAGATTAAGCA
AGGTATCGAAGG
back to top
Synonyms
Publications