jgi.p|Nanoce1779_2|573032, mRNA_1664 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|573032
Unique NamemRNA_1664
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length2020
Alignment locationscaffold_1:1190369..1192613 -

Link to JBrowse

Properties
Property NameValue
TranscriptId573118
TrackFilteredModels2
ProteinId573032
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_1supercontigscaffold_1:1190369..1192613 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|573032gene_1664Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|573032mRNA_1664-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1664CDS_1664Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1664 ID=mRNA_1664|Name=jgi.p|Nanoce1779_2|573032|organism=Nannochloropsis oceanica|type=mRNA|length=2020bp
GGAGGACAGTGCCAGCACATGGCTCGGCGATTATTGCGGCGAAGACGGGA
GAAACATATTTCATAGGCAGCACAAAACCACGCTCTCACCGAACCCACGG
ATACATAATAGGGGTACTATTACGTGGAGCTACGACTAACAAGAGGGCCA
TCCCAGCAAGGCGTACAGGGGCAGGTCAGCAGGGACAAAGCAAGGCCATA
GCTAGCCATGCTCTGGATGTCCGCTGTGGACATGGGATCTCCGGTCTTCA
TAACCGTGGGTGTTGCGCTGGTCACAACACTTTTGCTTGTGCATATGCGG
CGCCATGCACAGACCACGCAGCCTCTTCCCCCCTCGTACCGAGGCTGGGT
GCCCTTCCTGGGGGTGGGACTGGCATTCCTTAAGAATGTCAACGACTTTC
TCATCAAAATGCATACGAAACACCTGAATGATAGCCCCTTTAGAATCTAT
GTTGCGGGTAAATGGTGGTCTCTCGTGTACGCGCTGCCCGACGTAAAGCT
AGTGCTAAATAGTAAGGAAAGCGATCTGTCCTTCTTGGAAGGCTTTGCGG
ACTTGATGCAAGACATGCTACCAAAAGGGTTCACCTTCATACCACGGCAT
CATTTCTTTCTCCCCCTTTTTCGAGACGCCAACATGCAGTGGTTCTGCAA
TCTCCTTGCCGCCGAAGCTAAGACGCAGATACCATTACTCTTCCACGCCC
CCTCCTCCTCCTCGTCGTCGTCTTATTCCTCATCCCCGTCATCCCCATCA
ACCCCCCCGGGCCTGATTGACCTTTTTGACACATGCCGTCACCTAGTCAT
GCGCCTCAATCTTCGCGTTCTATTCGGGCCACACATTTTAAAAGATGGTC
GTTATGGGCAATTTTATGAGTGTTTTGACGTGATCGACCCGGAAAAAGGC
CTGGTTGACATGATGTCTTCTCTTTTGCTCGGCCCCAGAAAAAAGGAACA
GGCATGGGTAAAAATAAGAGGCTTAACAGAGGAGGCGCTGGTCTTGTACC
GAAAAGCAAAGGAGGAACGAGGGAGGGAGGGAGAGGTAGGAGAGAAGGAA
GAGCGTGCGGAAAGTGTTCTTGATCTATTGGTGCGGGAGGAGGTGGGCGG
GTTGGACTTGGAGGAGTTGGTGGCGGACATGTTTGCCTTTGTGTTTGCGG
CCTTTACAAATAGCTTTGCGGTTTTGGCGTGGTGTATATGGGAATTGGCG
GGGAATGAGGAGGTGCGATCGCGGTTCGTCGCAGAATGCACCACCAGCAG
CAGTGGCAGTTGCAGCAGCAGCAGCAGCAGCAGCAGATATCGCGACGAGA
GTGTGGAGAAATTGGAGCAGCAGGAAATGCGCCAAGTGAGAAGTGACAGC
AATAAGAAGACGAGCAAGTGCAAAGCAGACGACCACCATCTCTCCAACAT
TGAGAATATGCGCGTCGGGAAAGCCGTCATCGATGAAGTCATTCGCCTTC
ATTCCCCCGGGCTTTTCTTTCGCAAGGTGGTCAATCCTCATGGCCTCCTT
CTGTCCACAGGACACCACGTCCCAGCCGGTGACTTTCTTGCTTTCTCAGC
CCGACACATAAACACCCTCTCCTCCTTCTATCATAGCCCGTTGGATTTTG
ACATCGACCGGTTTTTGGTCCGGGACGAGAAGAAGAAGGCGGGGATTTTC
GCCCTGCAGTGGGGGGGAGGGAGGCATCCTTGTCTGGGGGCCAGATTCGC
GGCGCTTGAGATTTTGTTGGTGCTGCGGGAGGTATTTGGGGAGGAAGGGA
AGGGGGAAGGGAAGGGGATGAGGTTGTGGAGGGTGACGGAGGAGGTGGAG
GTGAGTAAAGGACAGGTGGGGACGAGTGATAAGCCGGTGCATCCTGTTTA
CGTGGGTGTACTTCTGAAGGGAGAGGAGGAGGTAAGGGAGTAAGCAAACA
TGTGCTCCTGCAGGGAATGGTGGAGATGAGAGTCAAAAAAGCATACGTTA
GAATGGATGAAGATGTAAATACCCATGAAAATTAAGGTATTTTATGTTGC
GTCTTATTAACATAATCATA
back to top

protein sequence of jgi.p|Nanoce1779_2|573032

>mRNA_1664-protein ID=mRNA_1664-protein|Name=jgi.p|Nanoce1779_2|573032|organism=Nannochloropsis oceanica|type=polypeptide|length=562bp
MLWMSAVDMGSPVFITVGVALVTTLLLVHMRRHAQTTQPLPPSYRGWVPF
LGVGLAFLKNVNDFLIKMHTKHLNDSPFRIYVAGKWWSLVYALPDVKLVL
NSKESDLSFLEGFADLMQDMLPKGFTFIPRHHFFLPLFRDANMQWFCNLL
AAEAKTQIPLLFHAPSSSSSSSYSSSPSSPSTPPGLIDLFDTCRHLVMRL
NLRVLFGPHILKDGRYGQFYECFDVIDPEKGLVDMMSSLLLGPRKKEQAW
VKIRGLTEEALVLYRKAKEERGREGEVGEKEERAESVLDLLVREEVGGLD
LEELVADMFAFVFAAFTNSFAVLAWCIWELAGNEEVRSRFVAECTTSSSG
SCSSSSSSSRYRDESVEKLEQQEMRQVRSDSNKKTSKCKADDHHLSNIEN
MRVGKAVIDEVIRLHSPGLFFRKVVNPHGLLLSTGHHVPAGDFLAFSARH
INTLSSFYHSPLDFDIDRFLVRDEKKKAGIFALQWGGGRHPCLGARFAAL
EILLVLREVFGEEGKGEGKGMRLWRVTEEVEVSKGQVGTSDKPVHPVYVG
VLLKGEEEVRE*
back to top

mRNA from alignment at scaffold_1:1190369..1192613-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1664 ID=mRNA_1664|Name=jgi.p|Nanoce1779_2|573032|organism=Nannochloropsis oceanica|type=mRNA|length=2245bp|location=Sequence derived from alignment at scaffold_1:1190369..1192613- (Nannochloropsis oceanica)
GGAGGACAGTGCCAGCACATGGCTCGGCGATTATTGCGGCGAAGACGGGA
GAAACATATTTCATAGGCAGCACAAAACCACGCTCTCACCGAACCCACGG
ATACATAATAGGGGTACTATTACGTGGAGCTACGACTAACAAGAGGGCCA
TCCCAGCAAGGCGTACAGGGGCAGGTCAGCAGGGACAAAGCAAGTACGTA
CGACCCAAGAAGTGGACCTCGATCAGCGACATGGGGAGGTTAATTTCGGT
CGGCCTGGGCAATCATACAGTCTCCCCCGCCAGATATGTCCATGAATACA
AACGACCCATCAAATAACTCAATGTATCTCGAGAGATTGCCATTGTCAAT
ATCGATATGACAAAAGGCCAGGAAAATCATAATCACGCAATCAACTCAAC
AACAACAACACCGACCAGGGCCATAGCTAGCCATGCTCTGGATGTCCGCT
GTGGACATGGGATCTCCGGTCTTCATAACCGTGGGTGTTGCGCTGGTCAC
AACACTTTTGCTTGTGCATATGCGGCGCCATGCACAGACCACGCAGCCTC
TTCCCCCCTCGTACCGAGGCTGGGTGCCCTTCCTGGGGGTGGGACTGGCA
TTCCTTAAGAATGTCAACGACTTTCTCATCAAAATGCATACGAAACACCT
GAATGATAGCCCCTTTAGAATCTATGTTGCGGGTAAATGGTGGTCTCTCG
TGTACGCGCTGCCCGACGTAAAGCTAGTGCTAAATAGTAAGGAAAGCGAT
CTGTCCTTCTTGGAAGGCTTTGCGGACTTGATGCAAGACATGCTACCAAA
AGGGTTCACCTTCATACCACGGCATCATTTCTTTCTCCCCCTTTTTCGAG
ACGCCAACATGCAGTGGTTCTGCAATCTCCTTGCCGCCGAAGCTAAGACG
CAGATACCATTACTCTTCCACGCCCCCTCCTCCTCCTCGTCGTCGTCTTA
TTCCTCATCCCCGTCATCCCCATCAACCCCCCCGGGCCTGATTGACCTTT
TTGACACATGCCGTCACCTAGTCATGCGCCTCAATCTTCGCGTTCTATTC
GGGCCACACATTTTAAAAGATGGTCGTTATGGGCAATTTTATGAGTGTTT
TGACGTGATCGACCCGGAAAAAGGCCTGGTTGACATGATGTCTTCTCTTT
TGCTCGGCCCCAGAAAAAAGGAACAGGCATGGGTAAAAATAAGAGGCTTA
ACAGAGGAGGCGCTGGTCTTGTACCGAAAAGCAAAGGAGGAACGAGGGAG
GGAGGGAGAGGTAGGAGAGAAGGAAGAGCGTGCGGAAAGTGTTCTTGATC
TATTGGTGCGGGAGGAGGTGGGCGGGTTGGACTTGGAGGAGTTGGTGGCG
GACATGTTTGCCTTTGTGTTTGCGGCCTTTACAAATAGCTTTGCGGTTTT
GGCGTGGTGTATATGGGAATTGGCGGGGAATGAGGAGGTGCGATCGCGGT
TCGTCGCAGAATGCACCACCAGCAGCAGTGGCAGTTGCAGCAGCAGCAGC
AGCAGCAGCAGATATCGCGACGAGAGTGTGGAGAAATTGGAGCAGCAGGA
AATGCGCCAAGTGAGAAGTGACAGCAATAAGAAGACGAGCAAGTGCAAAG
CAGACGACCACCATCTCTCCAACATTGAGAATATGCGCGTCGGGAAAGCC
GTCATCGATGAAGTCATTCGCCTTCATTCCCCCGGGCTTTTCTTTCGCAA
GGTGGTCAATCCTCATGGCCTCCTTCTGTCCACAGGACACCACGTCCCAG
CCGGTGACTTTCTTGCTTTCTCAGCCCGACACATAAACACCCTCTCCTCC
TTCTATCATAGCCCGTTGGATTTTGACATCGACCGGTTTTTGGTCCGGGA
CGAGAAGAAGAAGGCGGGGATTTTCGCCCTGCAGTGGGGGGGAGGGAGGC
ATCCTTGTCTGGGGGCCAGATTCGCGGCGCTTGAGATTTTGTTGGTGCTG
CGGGAGGTATTTGGGGAGGAAGGGAAGGGGGAAGGGAAGGGGATGAGGTT
GTGGAGGGTGACGGAGGAGGTGGAGGTGAGTAAAGGACAGGTGGGGACGA
GTGATAAGCCGGTGCATCCTGTTTACGTGGGTGTACTTCTGAAGGGAGAG
GAGGAGGTAAGGGAGTAAGCAAACATGTGCTCCTGCAGGGAATGGTGGAG
ATGAGAGTCAAAAAAGCATACGTTAGAATGGATGAAGATGTAAATACCCA
TGAAAATTAAGGTATTTTATGTTGCGTCTTATTAACATAATCATA
back to top

Coding sequence (CDS) from alignment at scaffold_1:1190369..1192613-

>mRNA_1664 ID=mRNA_1664|Name=jgi.p|Nanoce1779_2|573032|organism=Nannochloropsis oceanica|type=CDS|length=1686bp|location=Sequence derived from alignment at scaffold_1:1190369..1192613- (Nannochloropsis oceanica)
ATGCTCTGGATGTCCGCTGTGGACATGGGATCTCCGGTCTTCATAACCGT
GGGTGTTGCGCTGGTCACAACACTTTTGCTTGTGCATATGCGGCGCCATG
CACAGACCACGCAGCCTCTTCCCCCCTCGTACCGAGGCTGGGTGCCCTTC
CTGGGGGTGGGACTGGCATTCCTTAAGAATGTCAACGACTTTCTCATCAA
AATGCATACGAAACACCTGAATGATAGCCCCTTTAGAATCTATGTTGCGG
GTAAATGGTGGTCTCTCGTGTACGCGCTGCCCGACGTAAAGCTAGTGCTA
AATAGTAAGGAAAGCGATCTGTCCTTCTTGGAAGGCTTTGCGGACTTGAT
GCAAGACATGCTACCAAAAGGGTTCACCTTCATACCACGGCATCATTTCT
TTCTCCCCCTTTTTCGAGACGCCAACATGCAGTGGTTCTGCAATCTCCTT
GCCGCCGAAGCTAAGACGCAGATACCATTACTCTTCCACGCCCCCTCCTC
CTCCTCGTCGTCGTCTTATTCCTCATCCCCGTCATCCCCATCAACCCCCC
CGGGCCTGATTGACCTTTTTGACACATGCCGTCACCTAGTCATGCGCCTC
AATCTTCGCGTTCTATTCGGGCCACACATTTTAAAAGATGGTCGTTATGG
GCAATTTTATGAGTGTTTTGACGTGATCGACCCGGAAAAAGGCCTGGTTG
ACATGATGTCTTCTCTTTTGCTCGGCCCCAGAAAAAAGGAACAGGCATGG
GTAAAAATAAGAGGCTTAACAGAGGAGGCGCTGGTCTTGTACCGAAAAGC
AAAGGAGGAACGAGGGAGGGAGGGAGAGGTAGGAGAGAAGGAAGAGCGTG
CGGAAAGTGTTCTTGATCTATTGGTGCGGGAGGAGGTGGGCGGGTTGGAC
TTGGAGGAGTTGGTGGCGGACATGTTTGCCTTTGTGTTTGCGGCCTTTAC
AAATAGCTTTGCGGTTTTGGCGTGGTGTATATGGGAATTGGCGGGGAATG
AGGAGGTGCGATCGCGGTTCGTCGCAGAATGCACCACCAGCAGCAGTGGC
AGTTGCAGCAGCAGCAGCAGCAGCAGCAGATATCGCGACGAGAGTGTGGA
GAAATTGGAGCAGCAGGAAATGCGCCAAGTGAGAAGTGACAGCAATAAGA
AGACGAGCAAGTGCAAAGCAGACGACCACCATCTCTCCAACATTGAGAAT
ATGCGCGTCGGGAAAGCCGTCATCGATGAAGTCATTCGCCTTCATTCCCC
CGGGCTTTTCTTTCGCAAGGTGGTCAATCCTCATGGCCTCCTTCTGTCCA
CAGGACACCACGTCCCAGCCGGTGACTTTCTTGCTTTCTCAGCCCGACAC
ATAAACACCCTCTCCTCCTTCTATCATAGCCCGTTGGATTTTGACATCGA
CCGGTTTTTGGTCCGGGACGAGAAGAAGAAGGCGGGGATTTTCGCCCTGC
AGTGGGGGGGAGGGAGGCATCCTTGTCTGGGGGCCAGATTCGCGGCGCTT
GAGATTTTGTTGGTGCTGCGGGAGGTATTTGGGGAGGAAGGGAAGGGGGA
AGGGAAGGGGATGAGGTTGTGGAGGGTGACGGAGGAGGTGGAGGTGAGTA
AAGGACAGGTGGGGACGAGTGATAAGCCGGTGCATCCTGTTTACGTGGGT
GTACTTCTGAAGGGAGAGGAGGAGGTAAGGGAGTAA
back to top
Synonyms
Publications