jgi.p|Nanoce1779_2|573028, mRNA_1663 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|573028
Unique NamemRNA_1663
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1171
Alignment locationscaffold_1:1189198..1190368 +

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Properties
Property NameValue
TranscriptId573114
TrackFilteredModels2
ProteinId573028
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_1supercontigscaffold_1:1189198..1190368 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|573028gene_1663Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|573028mRNA_1663-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1663CDS_1663Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1663 ID=mRNA_1663|Name=jgi.p|Nanoce1779_2|573028|organism=Nannochloropsis oceanica|type=mRNA|length=1171bp
CTTATCCCACGTACATACCCCACCACATCACGCAATCAAGTCTGCATAAT
CTTCCTGTTGTCTCGGTGCCGCTGTCGCTCCACCTCTAGCATCACAAGCC
CCTTCCCTGCCTCTCCTCCCCCTCTTCAAGCCGTCAATCCAGCCATGGCA
CCGGCAGTAGCCGCCGTGACGGCCGCCCGGTCCTCCCTCATCAACCACGG
CAAGAAAATCATCGGTGTCGGGAAAAATTACGCCCTCCATATCAAGGAAA
TGGGGGGCCAAGCACCCAAGGCCCCCGTTCTGTTTCTCAAACCCACTACA
AGTTATGTCTTTGAAGGCACTCCCATCCGTCTTCATCCCAAGATTGGGGT
CGTGCACCACGAGGTGGAACTCGCCCTGGTCATCGACAAGAAAGCTCGAA
AAGTCAGGCCCGAAAACGCCATGCAATTCGTGGGTGGGTACGCCCTTGCA
ATCGACCTTACTGCTCGCGACATCCAAGAAGAGGCCAAGAAGCAAGGGCT
CCCGTGGACGGTAGCCAAGGGGCAAGATTACTTCTGTCCTATCTCCAACA
TGCTCTCCAAGGCTCAAATTCCCGATCCGGATGATGTGGGGATATGGCTG
CGTGTGAATGATGAGCCGCGTCAACGCTCGAATACGAAGCATATGGTGCA
TCGGACTGCCTTCTTGGTTAGTTACATCTCGCATTTGTTCACGCTTGAGC
CAGGGGATGTGATTTTGACGGGAACTCCTGAGGGGGTGGGGCCAATAAAG
GCTGGAGATACAGTGACGGCTGGCATAGAGGGCTTGATGCAGATGAGATT
TGCAGTGGAGGTGGATAGGGATGTATGAGGAGGGTAAAAAGGAAGGGTGG
GAGTAAACGAGGGAGGAGTCATGGCGGCGTATGCCTCCCTGTGAGCCCTG
TGAGCTTAGCTCTCAGCAAGTAAACTAGAACAGTCGATGAATGGGTAGAG
AGAGTGCGTTTCAGCATTCATGCGTGCTTCTTGTCATGATCTACATTTGG
GGATAGAATTAGTAGTAGTGAGGTGTATATATATGCATATTTTCGTTTGT
TTTGTTTCTTCGTTCATGTGGATTGAAGGAGGACACGTATGCGATGTGTC
TTGACTGAAGTATACGCGGAGCGAGGAGTGAGGAAGAAAAGACAATTAGA
AGGAGATTATAATGATGACGA
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protein sequence of jgi.p|Nanoce1779_2|573028

>mRNA_1663-protein ID=mRNA_1663-protein|Name=jgi.p|Nanoce1779_2|573028|organism=Nannochloropsis oceanica|type=polypeptide|length=228bp
MAPAVAAVTAARSSLINHGKKIIGVGKNYALHIKEMGGQAPKAPVLFLKP
TTSYVFEGTPIRLHPKIGVVHHEVELALVIDKKARKVRPENAMQFVGGYA
LAIDLTARDIQEEAKKQGLPWTVAKGQDYFCPISNMLSKAQIPDPDDVGI
WLRVNDEPRQRSNTKHMVHRTAFLVSYISHLFTLEPGDVILTGTPEGVGP
IKAGDTVTAGIEGLMQMRFAVEVDRDV*
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mRNA from alignment at scaffold_1:1189198..1190368+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1663 ID=mRNA_1663|Name=jgi.p|Nanoce1779_2|573028|organism=Nannochloropsis oceanica|type=mRNA|length=1171bp|location=Sequence derived from alignment at scaffold_1:1189198..1190368+ (Nannochloropsis oceanica)
CTTATCCCACGTACATACCCCACCACATCACGCAATCAAGTCTGCATAAT
CTTCCTGTTGTCTCGGTGCCGCTGTCGCTCCACCTCTAGCATCACAAGCC
CCTTCCCTGCCTCTCCTCCCCCTCTTCAAGCCGTCAATCCAGCCATGGCA
CCGGCAGTAGCCGCCGTGACGGCCGCCCGGTCCTCCCTCATCAACCACGG
CAAGAAAATCATCGGTGTCGGGAAAAATTACGCCCTCCATATCAAGGAAA
TGGGGGGCCAAGCACCCAAGGCCCCCGTTCTGTTTCTCAAACCCACTACA
AGTTATGTCTTTGAAGGCACTCCCATCCGTCTTCATCCCAAGATTGGGGT
CGTGCACCACGAGGTGGAACTCGCCCTGGTCATCGACAAGAAAGCTCGAA
AAGTCAGGCCCGAAAACGCCATGCAATTCGTGGGTGGGTACGCCCTTGCA
ATCGACCTTACTGCTCGCGACATCCAAGAAGAGGCCAAGAAGCAAGGGCT
CCCGTGGACGGTAGCCAAGGGGCAAGATTACTTCTGTCCTATCTCCAACA
TGCTCTCCAAGGCTCAAATTCCCGATCCGGATGATGTGGGGATATGGCTG
CGTGTGAATGATGAGCCGCGTCAACGCTCGAATACGAAGCATATGGTGCA
TCGGACTGCCTTCTTGGTTAGTTACATCTCGCATTTGTTCACGCTTGAGC
CAGGGGATGTGATTTTGACGGGAACTCCTGAGGGGGTGGGGCCAATAAAG
GCTGGAGATACAGTGACGGCTGGCATAGAGGGCTTGATGCAGATGAGATT
TGCAGTGGAGGTGGATAGGGATGTATGAGGAGGGTAAAAAGGAAGGGTGG
GAGTAAACGAGGGAGGAGTCATGGCGGCGTATGCCTCCCTGTGAGCCCTG
TGAGCTTAGCTCTCAGCAAGTAAACTAGAACAGTCGATGAATGGGTAGAG
AGAGTGCGTTTCAGCATTCATGCGTGCTTCTTGTCATGATCTACATTTGG
GGATAGAATTAGTAGTAGTGAGGTGTATATATATGCATATTTTCGTTTGT
TTTGTTTCTTCGTTCATGTGGATTGAAGGAGGACACGTATGCGATGTGTC
TTGACTGAAGTATACGCGGAGCGAGGAGTGAGGAAGAAAAGACAATTAGA
AGGAGATTATAATGATGACGA
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Coding sequence (CDS) from alignment at scaffold_1:1189198..1190368+

>mRNA_1663 ID=mRNA_1663|Name=jgi.p|Nanoce1779_2|573028|organism=Nannochloropsis oceanica|type=CDS|length=684bp|location=Sequence derived from alignment at scaffold_1:1189198..1190368+ (Nannochloropsis oceanica)
ATGGCACCGGCAGTAGCCGCCGTGACGGCCGCCCGGTCCTCCCTCATCAA
CCACGGCAAGAAAATCATCGGTGTCGGGAAAAATTACGCCCTCCATATCA
AGGAAATGGGGGGCCAAGCACCCAAGGCCCCCGTTCTGTTTCTCAAACCC
ACTACAAGTTATGTCTTTGAAGGCACTCCCATCCGTCTTCATCCCAAGAT
TGGGGTCGTGCACCACGAGGTGGAACTCGCCCTGGTCATCGACAAGAAAG
CTCGAAAAGTCAGGCCCGAAAACGCCATGCAATTCGTGGGTGGGTACGCC
CTTGCAATCGACCTTACTGCTCGCGACATCCAAGAAGAGGCCAAGAAGCA
AGGGCTCCCGTGGACGGTAGCCAAGGGGCAAGATTACTTCTGTCCTATCT
CCAACATGCTCTCCAAGGCTCAAATTCCCGATCCGGATGATGTGGGGATA
TGGCTGCGTGTGAATGATGAGCCGCGTCAACGCTCGAATACGAAGCATAT
GGTGCATCGGACTGCCTTCTTGGTTAGTTACATCTCGCATTTGTTCACGC
TTGAGCCAGGGGATGTGATTTTGACGGGAACTCCTGAGGGGGTGGGGCCA
ATAAAGGCTGGAGATACAGTGACGGCTGGCATAGAGGGCTTGATGCAGAT
GAGATTTGCAGTGGAGGTGGATAGGGATGTATGA
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Synonyms
Publications