jgi.p|Nanoce1779_2|573025, mRNA_1661 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|573025
Unique NamemRNA_1661
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length406
Alignment locationscaffold_1:1186312..1186717 -

Link to JBrowse

Properties
Property NameValue
TranscriptId573111
TrackFilteredModels2
ProteinId573025
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_1supercontigscaffold_1:1186312..1186717 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|573025gene_1661Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|573025mRNA_1661-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1661CDS_1661Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1661 ID=mRNA_1661|Name=jgi.p|Nanoce1779_2|573025|organism=Nannochloropsis oceanica|type=mRNA|length=406bp
GGGGGAAGGGGAGGGGGACGAAGATGAAAAGGAGGAGGTAGATGGGGAAA
AAGACCAAATTCTCCCTCCTCTTCCTCGCAGGAGCAGTAGTAGCAACAGC
AGCATTAACGGAAAGCCCCGACACATTGCCCTGGTCTTGTTGGAGGTCAT
CGAAAATTGCCTCCCGTCCTTATCGCCCGCCAACCTTTCGTTGGTCCTTC
GCGCGTTGGCCCGTCTTGGGGTCCGCCCTCTCCCTATCGGCTTCCTCCGA
AAAGCAGAGAAACGCTTAGAACCTTTTGTCACCTCGCTAACAGGGATGGA
ATCTGCCTTAATTTTACATGCACTGGCGAGACTTTCCACACATGCCTGTG
CCAGGGAGGAGGAGGAAGGGAGAGAGGGAGGGGCGGGGATGTTGCACGGG
ACGTGT
back to top

protein sequence of jgi.p|Nanoce1779_2|573025

>mRNA_1661-protein ID=mRNA_1661-protein|Name=jgi.p|Nanoce1779_2|573025|organism=Nannochloropsis oceanica|type=polypeptide|length=76bp
MGKKTKFSLLFLAGAVVATAALTESPDTLPWSCWRSSKIASRPYRPPTFR
WSFARWPVLGSALSLSASSEKQRNA*
back to top

mRNA from alignment at scaffold_1:1186312..1186717-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1661 ID=mRNA_1661|Name=jgi.p|Nanoce1779_2|573025|organism=Nannochloropsis oceanica|type=mRNA|length=406bp|location=Sequence derived from alignment at scaffold_1:1186312..1186717- (Nannochloropsis oceanica)
GGGGGAAGGGGAGGGGGACGAAGATGAAAAGGAGGAGGTAGATGGGGAAA
AAGACCAAATTCTCCCTCCTCTTCCTCGCAGGAGCAGTAGTAGCAACAGC
AGCATTAACGGAAAGCCCCGACACATTGCCCTGGTCTTGTTGGAGGTCAT
CGAAAATTGCCTCCCGTCCTTATCGCCCGCCAACCTTTCGTTGGTCCTTC
GCGCGTTGGCCCGTCTTGGGGTCCGCCCTCTCCCTATCGGCTTCCTCCGA
AAAGCAGAGAAACGCTTAGAACCTTTTGTCACCTCGCTAACAGGGATGGA
ATCTGCCTTAATTTTACATGCACTGGCGAGACTTTCCACACATGCCTGTG
CCAGGGAGGAGGAGGAAGGGAGAGAGGGAGGGGCGGGGATGTTGCACGGG
ACGTGT
back to top

Coding sequence (CDS) from alignment at scaffold_1:1186312..1186717-

>mRNA_1661 ID=mRNA_1661|Name=jgi.p|Nanoce1779_2|573025|organism=Nannochloropsis oceanica|type=CDS|length=228bp|location=Sequence derived from alignment at scaffold_1:1186312..1186717- (Nannochloropsis oceanica)
ATGGGGAAAAAGACCAAATTCTCCCTCCTCTTCCTCGCAGGAGCAGTAGT
AGCAACAGCAGCATTAACGGAAAGCCCCGACACATTGCCCTGGTCTTGTT
GGAGGTCATCGAAAATTGCCTCCCGTCCTTATCGCCCGCCAACCTTTCGT
TGGTCCTTCGCGCGTTGGCCCGTCTTGGGGTCCGCCCTCTCCCTATCGGC
TTCCTCCGAAAAGCAGAGAAACGCTTAG
back to top
Synonyms
Publications