jgi.p|Nanoce1779_2|13482, mRNA_1658 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|13482
Unique Name	mRNA_1658
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2128
Alignment location	scaffold_1:1175774..1178128 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	13568
Track	FilteredModels2
ProteinId	13482

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_1	supercontig	scaffold_1:1175774..1178128 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|13482	gene_1658	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|13482	mRNA_1658-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_1658	CDS_1658	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_1:1175774..1178128+
coding sequence from alignment at scaffold_1:1175774..1178128+

mRNA sequence

>mRNA_1658 ID=mRNA_1658|Name=jgi.p|Nanoce1779_2|13482|organism=Nannochloropsis oceanica|type=mRNA|length=2128bp
CTTTATGTACAATGGGAAGTACATCCTGCGCGAAGCCTCCGCTTCTGAGT
CGTCCTTTGGACTGACGCTTCATTGAGACATGGATACCAGAGGGTGGGAA
TGTCTCCGCATCAAAGCCAAATTTACACATGACCTGTCCAGACCAAAAAA
CGACGGAAAATGTACGCTTGTGTTGTGCCGGGGTGCCGACACATGCCCTA
AATTCATCAGTCCCATGCCCCATGCCCTACCATTCCCGATGGGGCAACCC
TTTCGCAAAGGGGAAAAGGCGCCAAGCCTCCTTTTAGACAAAAGCACCAA
GAAAGCCGCCGCCCTCACCATGCTGTCGCGTCGTAGCCACGACCATGTAG
CGCAGCATCTCCTGCTCTCTGTCCCTCACAGTGTCTATGCGTCGGGCTAC
CTCATCGAAGCGGCCCCCTCAAAATCGCTCACGGCTCGCTCATTCCCGCC
TTGAATTCTTTCCGCGTCGGGACCCCTCACGTTCTTCGTCGACTCACTCA
CAAACACAACAGAGCGCGCACGGAGGCTCCTTGTCTCCGTCCGCAGGCAT
GCAAACCACTACCCGTGCCATCCACGGGGAGCCCAGCTACACGCGGGTCA
AGCGCGAGCCGACCAAGCTCCTGAGCCTCTACAATACAGCTCCCGAGGCT
GAAATCACCCTGGAGGAATTTGAGCTATACGCGCTGGACCGCCTCCAAGT
GCTGCGGACGATTGAAAGCTTGCGGCTGCGTGGCATTAAGGGCGACGAGT
TTAAGATGAAGCTCGAAGAGGTTATGGCGACGTGCTTGCCCATGAGTCAG
GGCACGGTGGAGGAAGTCCTGAAAGACCAAGTCTCGCATTTCATTCTGCG
CATCGCCCACTGCAAGACGGAGGACCTGCGTCGATGGTTCCTAAAGCACG
AGAGCGAACTGTTTCGCTTTCGGTTGGAGAGGTTGGATAGTGGGGAACGG
GCGAAATTTATGGAGCAGAGTGGGTTGGCGTACGACATGGTCTCAAAGGA
GGACGTGTTGCGTCTCAAGGCCCAATTGCAGGCCGTCCCTATCTTTAGCC
AGCAGCCGGGGTATGGCCAGGGGGGCCATACTGTAGAAGTGACGAGGACG
CAGTTCTTTCGGATCCCGTTCACACAGGCATTGGATTTGGTTGCGCACCG
ACAGGTTTTCTTGGAGGCGGGGTTTGCGTATGTACCTGTTGAGAGGTTGG
TCAGCATTATTGTGGCCAGGTTTCGTAGTTCCTTGTCGCGGGGCCTCTTG
GATGCATTTGGGTCGATGCCTTACGTGTTGGCGGACGGGAGGATTGCGCC
GTTGGTGAATAACATGGCGAAGCAGTACACGGGGAAGGACTTCTCGGAGA
CCAAGAGTGGCGATACGGTGAATGTGAATGACTTGGACATGCTCGCCGAC
AGGTCCATGCCGTTGTGCATGCGTGTGCTGCACAAGAATCTCCGGTCGGA
GCATAAACTAAAGCATTGGGGGCGGTTGCAGTATGGCTTGTTCTTGAAGG
GGGTGGGGATAGGCATGGAAGATGCGATCCAATTCTGGGAGCGGGAGTTC
ACGAAGATTATGACGACGGATGTATTCAACAAGCAGTACGCGTATTCGAT
TAGGCATTATTTTGGAAAGGAGGGAAGAAGGAAGGATTATACGCCGTTCA
ATTGCTCTAAGATAATCTTGGGTGCGGGCCCGGGGGTGGGGGAGTATCAT
GGATGCCCTTACAGACATTACGATGAGGCGAACTTGAACCGACTATTGGA
GAGGAGTGGGGTGGGGGTTACAGAGAGGGAGGAGATGTTGAAGCTCTCCA
AGGGGCAGCATTATCAGTTGGCGTGCGCGAAGCACTTTGAAGTAAGTCAT
AAGGGGGCGGAGAGTGTGATCAGTCTTGATGGGGTCGGCAACCACCCAAA
TGCATTTTTTGCGGCCAGCATGGCTTACTATGAAGGAGGTTTAGGATTTA
TGCGAGTGCTGTGTGCTTTCGAGCTGCGAGGTGAGGGAGAGGAATGAGCT
GATGGGGAAAAGCTCCAAATAACAAAAGAGTAATTGAGCAGGAGACGGAA
AGGATTAAAGATGATTAAGAAAAATGAGACGAACAGCTTTTATAAGATCA
TCAACAACAAGAATAACAAATAATATAA

protein sequence of jgi.p|Nanoce1779_2|13482

>mRNA_1658-protein ID=mRNA_1658-protein|Name=jgi.p|Nanoce1779_2|13482|organism=Nannochloropsis oceanica|type=polypeptide|length=537bp
MRRATSSKRPPQNRSRLAHSRLEFFPRRDPSRSSSTHSQTQQSAHGGSLS
PSAGMQTTTRAIHGEPSYTRVKREPTKLLSLYNTAPEAEITLEEFELYAL
DRLQVLRTIESLRLRGIKGDEFKMKLEEVMATCLPMSQGTVEEVLKDQVS
HFILRIAHCKTEDLRRWFLKHESELFRFRLERLDSGERAKFMEQSGLAYD
MVSKEDVLRLKAQLQAVPIFSQQPGYGQGGHTVEVTRTQFFRIPFTQALD
LVAHRQVFLEAGFAYVPVERLVSIIVARFRSSLSRGLLDAFGSMPYVLAD
GRIAPLVNNMAKQYTGKDFSETKSGDTVNVNDLDMLADRSMPLCMRVLHK
NLRSEHKLKHWGRLQYGLFLKGVGIGMEDAIQFWEREFTKIMTTDVFNKQ
YAYSIRHYFGKEGRRKDYTPFNCSKIILGAGPGVGEYHGCPYRHYDEANL
NRLLERSGVGVTEREEMLKLSKGQHYQLACAKHFEVSHKGAESVISLDGV
GNHPNAFFAASMAYYEGGLGFMRVLCAFELRGEGEE*

mRNA from alignment at scaffold_1:1175774..1178128+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_1658 ID=mRNA_1658|Name=jgi.p|Nanoce1779_2|13482|organism=Nannochloropsis oceanica|type=mRNA|length=2355bp|location=Sequence derived from alignment at scaffold_1:1175774..1178128+ (Nannochloropsis oceanica)
CTTTATGTACAATGGGAAGTACATCCTGCGCGAAGCCTCCGCTTCTGAGT
CGTCCTTTGGACTGACGCTTCATTGAGACATGGATACCAGAGGGTGGGAA
TGTCTCCGCATCAAAGCCAAATTTACACATGACCTGTCCAGACCAAAAAA
CGACGGAAAATGTACGCTTGTGTTGTGCCGGGGTGCCGACACATGCCCTA
AATTCATCAGTCCCATGCCCCATGCCCTACCATTCCCGATGGGGCAACCC
TTTCGCAAAGGGGAAAAGGCGCCAAGCCTCCTTTTAGACAAAAGCACCAA
GAAAGCCGCCGCCCTCACCATGCTGTCGCGTCGTAGCCACGACCATGTAG
CGCAGCATCTCCTGCTCTCTGTCCCTCACAGTGTCTATGCGTCGGGCTAC
CTCATCGAAGCGGCCCCCTCAAAATCGCTCACGGCTCGCTCATTCCCGCC
TTGAATTCTTTCCGCGTCGGGACCCCTCACGTTCTTCGTCGACTCACTCA
CAAACACAACAGAGCGCGCACGGAGGCTCCTTGTCTCCGTCCGCAGGCAT
GCAAACCACTACCCGTGCCATCCACGGGGAGCCCAGCTACACGCGGGTCA
AGCGCGAGCCGACCAAGCTCCTGAGCCTCTACAATACAGCTCCCGAGGCT
GAAATCACCCTGGAGGAATTTGAGCTATACGCGCTGGACCGCCTCCAAGT
GCTGCGGACGATTGAAAGCTTGCGGCTGCGTGGCATTAAGGGCGACGAGT
TTAAGATGAAGCTCGAAGAGGTTATGGCGACGTGCTTGCCCATGAGTCAG
GGCACGGTGGAGGAAGTCCTGAAAGACCAAGTCTCGCATTTCATTCTGCG
CATCGCCCACTGCAAGACGGAGGACCTGCGTCGATGGTTCCTAAAGCACG
AGAGCGAACTGTTTCGCTTTCGGTTGGAGAGGTTGGATAGTGGGGAACGG
GCGAAATTTATGGAGCAGAGTGGGTTGGCGTACGACATGGTCTCAAAGGA
GGACGTGTTGCGTCTCAAGGCCCAATTGCAGGCCGTCCCTATCTTTAGCC
AGCAGCCGGGGTATGGCCAGGGGGGCCATACTGTAGAAGTGACGAGGACG
CAGTTCTTTCGGATCCCGTTCACACAGGCATTGGATTTGGTTGCGCACCG
ACAGGTTTTCTTGGAGGCGGGGTTTGCGTATGTACCTGTTGAGAGGTTGG
TCAGCATTATTGTGGCCAGGTTTCGTAGTTCCTTGTCGCGGGGCCTCTTG
GATGCATTTGGGTCGATGCCTTACGTGTTGGCGGACGGGAGGATTGCGCC
GTTGGTGAATAACATGGCGAAGCAGTACACGGGGAAGGACTTCTCGGAGA
CCAAGAGTGGCGATACGGTGAATGTGAATGACTTGGACATGCTCGCCGAC
AGGTCCATGCCGTTGTGCATGCGTGTGCTGCACAAGAATCTCCGGTCGGA
GCATAAACTAAAGCATTGGGGGCGGTTGCAGTATGGCTTGTTCTTGAAGG
GGGTGGGGATAGGCATGGAAGATGCGATCCAATTCTGGGAGCGGGAGTTC
ACGAAGATTATGACGACGGATGTATTCAACAAGCAGTACGCGTATTCGAT
TAGGCATTATTTTGGAAAGGAGGGAAGAAGGAAGGATTATACGCCGTTCA
ATTGCTCTAAGATAATCTTGGGTGCGGGCCCGGGGGTGGGGGAGTATCAT
GGATGCCCTTACAGACATTACGATGAGGCGAACTTGAACCGACTATTGGA
GAGGAGTGGGGTGGGGGTTACAGAGAGGGAGGAGATGTTGAAGCTCTCCA
AGGGGCAGCATTATCAGTTGGCGTGCGCGAAGCACTTTGAAGTAAGTCAT
AAGGGGGCGGAGAGTGTGATCAGTCTTGATGGGGTCGGCAACCACCCAAA
TGCATTTTTTGCGGCCAGCATGGCTTACTATAAGGAGAAAAATGGGGGGG
AAACGGGAGGGAAAAGGGGAGGGAAAGAGTCGTCGCAGTCACCGGCGGGG
TCGCAAGCATCGGGATTCACGGCGGGAGGGGAGGGAGGGGAAGGGGACGA
TAGAGGGACGCCGACGTCGCCAATGGCGGCGGCGATGGAGGTGGAGGCGG
GGAGTGGGCACCCGCCGGAGTGAGGGGGGAAGGGAGGGAGGGAGGGGTGT
TTGCATAGGAAGGAGGTTTAGGATTTATGCGAGTGCTGTGTGCTTTCGAG
CTGCGAGGTGAGGGAGAGGAATGAGCTGATGGGGAAAAGCTCCAAATAAC
AAAAGAGTAATTGAGCAGGAGACGGAAAGGATTAAAGATGATTAAGAAAA
ATGAGACGAACAGCTTTTATAAGATCATCAACAACAAGAATAACAAATAA
TATAA

Coding sequence (CDS) from alignment at scaffold_1:1175774..1178128+

>mRNA_1658 ID=mRNA_1658|Name=jgi.p|Nanoce1779_2|13482|organism=Nannochloropsis oceanica|type=CDS|length=3222bp|location=Sequence derived from alignment at scaffold_1:1175774..1178128+ (Nannochloropsis oceanica)
ATGCGTCGGGCTACCTCATCGAAGCGGCCCCCTCAAAATCGCTCACGGCT
CGCTCATTCCCGCCTTGAATTCTTTCCGCGTCGGGACCCCTCACGTTCTT
CGTCGACTCACTCACAAACACAACAGAGCGCGCACGGAGGCTCCTTGTCT
CCGTCCGCAGGCATGCAAACCACTACCCGTGCCATCCACGGGGAGCCCAG
CTACACGCGGGTCAAGCGCGAGCCGACCAAGCTCCTGAGCCTCTACAATA
CAGCTCCCGAGGCTGAAATCACCCTGGAGGAATTTGAGCTATACGCGCTG
GACCGCCTCCAAGTGCTGCGGACGATTGAAAGCTTGCGGCTGCGTGGCAT
TAAGGGCGACGAGTTTAAGATGAAGCTCGAAGAGGTTATGGCGACGTGCT
TGCCCATGAGTCAGGGCACGGTGGAGGAAGTCCTGAAAGACCAAGTCTCG
CATTTCATTCTGCGCATCGCCCACTGCAAGACGGAGGACCTGCGTCGATG
GTTCCTAAAGCACGAGAGCGAACTGTTTCGCTTTCGGTTGGAGAGGTTGG
ATAGTGGGGAACGGGCGAAATTTATGGAGCAGAGTGGGTTGGCGTACGAC
ATGGTCTCAAAGGAGGACGTGTTGCGTCTCAAGGCCCAATTGCAGGCCGT
CCCTATCTTTAGCCAGCAGCCGGGGTATGGCCAGGGGGGCCATACTGTAG
AAGTGACGAGGACGCAGTTCTTTCGGATCCCGTTCACACAGGCATTGGAT
TTGGTTGCGCACCGACAGGTTTTCTTGGAGGCGGGGTTTGCGTATGTACC
TGTTGAGAGGTTGGTCAGCATTATTGTGGCCAGGTTTCGTAGTTCCTTGT
CGCGGGGCCTCTTGGATGCATTTGGGTCGATGCCTTACGTGTTGGCGGAC
GGGAGGATTGCGCCGTTGGTGAATAACATGGCGAAGCAGTACACGGGGAA
GGACTTCTCGGAGACCAAGAGTGGCGATACGGTGAATGTGAATGACTTGG
ACATGCTCGCCGACAGGTCCATGCCGTTGTGCATGCGTGTGCTGCACAAG
AATCTCCGGTCGGAGCATAAACTAAAGCATTGGGGGCGGTTGCAGTATGG
CTTGTTCTTGAAGGGGGTGGGGATAGGCATGGAAGATGCGATCCAATTCT
GGGAGCGGGAGTTCACGAAGATTATGACGACGGATGTATTCAACAAGCAG
TACGCGTATTCGATTAGGCATTATTTTGGAAAGGAGGGAAGAAGGAAGGA
TTATACGCCGTTCAATTGCTCTAAGATAATCTTGGGTGCGGGCCCGGGGG
TGGGGGAGTATCATGGATGCCCTTACAGACATTACGATGAGGCGAACTTG
AACCGACTATTGGAGAGGAGTGGGGTGGGGGTTACAGAGAGGGAGGAGAT
GTTGAAGCTCTCCAAGGGGCAGCATTATCAGTTGGCGTGCGCGAAGCACT
TTGAAGTAAGTCATAAGGGGGCGGAGAGTGTGATCAGTCTTGATGGGGTC
GGCAACCACCCAAATGCATTTTTTGCGGCCAGCATGGCTTACTATGAAGG
AGGTTTAGGATTTATGCGAGTGCTGTGTGCTTTCGAGCTGCGAGGTGAGG
GAGAGGAATGAATGCGTCGGGCTACCTCATCGAAGCGGCCCCCTCAAAAT
CGCTCACGGCTCGCTCATTCCCGCCTTGAATTCTTTCCGCGTCGGGACCC
CTCACGTTCTTCGTCGACTCACTCACAAACACAACAGAGCGCGCACGGAG
GCTCCTTGTCTCCGTCCGCAGGCATGCAAACCACTACCCGTGCCATCCAC
GGGGAGCCCAGCTACACGCGGGTCAAGCGCGAGCCGACCAAGCTCCTGAG
CCTCTACAATACAGCTCCCGAGGCTGAAATCACCCTGGAGGAATTTGAGC
TATACGCGCTGGACCGCCTCCAAGTGCTGCGGACGATTGAAAGCTTGCGG
CTGCGTGGCATTAAGGGCGACGAGTTTAAGATGAAGCTCGAAGAGGTTAT
GGCGACGTGCTTGCCCATGAGTCAGGGCACGGTGGAGGAAGTCCTGAAAG
ACCAAGTCTCGCATTTCATTCTGCGCATCGCCCACTGCAAGACGGAGGAC
CTGCGTCGATGGTTCCTAAAGCACGAGAGCGAACTGTTTCGCTTTCGGTT
GGAGAGGTTGGATAGTGGGGAACGGGCGAAATTTATGGAGCAGAGTGGGT
TGGCGTACGACATGGTCTCAAAGGAGGACGTGTTGCGTCTCAAGGCCCAA
TTGCAGGCCGTCCCTATCTTTAGCCAGCAGCCGGGGTATGGCCAGGGGGG
CCATACTGTAGAAGTGACGAGGACGCAGTTCTTTCGGATCCCGTTCACAC
AGGCATTGGATTTGGTTGCGCACCGACAGGTTTTCTTGGAGGCGGGGTTT
GCGTATGTACCTGTTGAGAGGTTGGTCAGCATTATTGTGGCCAGGTTTCG
TAGTTCCTTGTCGCGGGGCCTCTTGGATGCATTTGGGTCGATGCCTTACG
TGTTGGCGGACGGGAGGATTGCGCCGTTGGTGAATAACATGGCGAAGCAG
TACACGGGGAAGGACTTCTCGGAGACCAAGAGTGGCGATACGGTGAATGT
GAATGACTTGGACATGCTCGCCGACAGGTCCATGCCGTTGTGCATGCGTG
TGCTGCACAAGAATCTCCGGTCGGAGCATAAACTAAAGCATTGGGGGCGG
TTGCAGTATGGCTTGTTCTTGAAGGGGGTGGGGATAGGCATGGAAGATGC
GATCCAATTCTGGGAGCGGGAGTTCACGAAGATTATGACGACGGATGTAT
TCAACAAGCAGTACGCGTATTCGATTAGGCATTATTTTGGAAAGGAGGGA
AGAAGGAAGGATTATACGCCGTTCAATTGCTCTAAGATAATCTTGGGTGC
GGGCCCGGGGGTGGGGGAGTATCATGGATGCCCTTACAGACATTACGATG
AGGCGAACTTGAACCGACTATTGGAGAGGAGTGGGGTGGGGGTTACAGAG
AGGGAGGAGATGTTGAAGCTCTCCAAGGGGCAGCATTATCAGTTGGCGTG
CGCGAAGCACTTTGAAGTAAGTCATAAGGGGGCGGAGAGTGTGATCAGTC
TTGATGGGGTCGGCAACCACCCAAATGCATTTTTTGCGGCCAGCATGGCT
TACTATGAAGGAGGTTTAGGATTTATGCGAGTGCTGTGTGCTTTCGAGCT
GCGAGGTGAGGGAGAGGAATGA

Synonyms

Publications