jgi.p|Nanoce1779_2|573011, mRNA_1656 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|573011
Unique NamemRNA_1656
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1470
Alignment locationscaffold_1:1169301..1170770 +

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Properties
Property NameValue
TranscriptId573097
TrackFilteredModels2
ProteinId573011
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_1supercontigscaffold_1:1169301..1170770 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|573011gene_1656Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|573011mRNA_1656-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1656CDS_1656Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1656 ID=mRNA_1656|Name=jgi.p|Nanoce1779_2|573011|organism=Nannochloropsis oceanica|type=mRNA|length=1470bp
GGGATTGATGACGTCATGAATAGGTAAGCAATTTCGGGGCCTGTCGAGCA
GAGAAAACATTCGCTCACCCCCATTTCATCCATTCCTCCATCCCTGTATT
TTGTCTACCTGCAGCAACAACCTGAATTTCCGTCTCATGGCAATTTTTCC
CGCCGTGCTTGCTCTGTACGGGACGTACCAAGCTTCCAAAGCTGCCATTT
ACAAGTTGACAAAGAAAAAAGGAAGGAGGGAGACAATTATGTTGCTGCGG
TCATTTTTGCTCTCTATGGAGAGGATGCTGAACCTGAGAAATGTCGGCGC
CTCGGAGGTAGGTAGGGAGTGTTGGAATTAATTCGGCACTAGGGATAAAA
CAGGGGCTGATTATCTAAAAAAAGAACCACACACTTTCGCATTTAACTTC
CCGCTTACCACCCATGTCCTTCTCCCTTCTTCCCTTCCTCCCTTCCTCCC
CTAGAACGAGATCAAATACTTGAAGCTTGACCGCACCCCAGTTCTCAAGC
CCATCCATGCCCCTGTCGGTGCAGCTGGTCAATCTCTCTCTCTCTCGCCA
GCTCCGCACCTGAACCGGCACCAGCACCGGCACCACCTGTCCACCTCCGT
TTCTTTGCCAGCAGGAGCTACACATCCACCATCGGCAGCAACAGGAGCAG
CAGTAGGAGTAGGAGTGGGAAGGAAAGACGGGTTATCTCTAGATGAAATT
AGGCAAATGTCTGCTGATAGCAGCGTCAATGGCAGAGGCGAGAGCTCCTC
GGTCTACGAGGACCTCCATAAGGAGAGGGCAGACGGCATTCAAGGACAGA
GGAACGGAGGGAGGGGGATAGAGGAGGAGAAAGACGATGGGAGGGAACCG
CCCAGGATTCAAACTGCTTGCCTGCAGGGCTCGCCGATCAGCAGTGCGGA
GAGCACGTGGGGGGACTTGGAAGGAGGAGGAAGTAATAATAATTACAACA
CAGATTTACGCGTTGTGTTCTTGAGGCCTGAAGACCTGGGGGTGTTGCTA
CTGTTGGTAAATCAATTTGCCGGGGTCATTCAACGGACGAGTAGTCGGTT
TCTGACTGATCTGGAGCTGAGAAATCTGCAGGAGGACTTGAATGAGATCG
CGGGAAACTGCGGGCCGGTGACTGTGGCACAGCAATTGTGTGTGGTGCAA
CGAATGCACCGGAGCTATCGGTTTTTGCAGTTGCCAGCCGGAAGTTTGTT
TTCGGGGTTGTAATGTGGGGAAAGACTGGAAAGAAGAAGGAAAGGCTGGG
ATTGATATGAAAAAATGCCATGAAATGGAGAAATATGGCCGTTGCGGGTG
TTACAGCACCGTCTAAATAGCAAGAGGGCTCTCGAAGTATCACTGGAAAC
ATCAGAAATGTCTGGGTGTGCTCTATGCATATTAAAGAGATGGTGCGATA
ATTAATTAATGGAGTAGATATATATAGAGTAGATATATATAGTGGTATTT
ATCGTCATGGTGAACTTTCG
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protein sequence of jgi.p|Nanoce1779_2|573011

>mRNA_1656-protein ID=mRNA_1656-protein|Name=jgi.p|Nanoce1779_2|573011|organism=Nannochloropsis oceanica|type=polypeptide|length=169bp
MSADSSVNGRGESSSVYEDLHKERADGIQGQRNGGRGIEEEKDDGREPPR
IQTACLQGSPISSAESTWGDLEGGGSNNNYNTDLRVVFLRPEDLGVLLLL
VNQFAGVIQRTSSRFLTDLELRNLQEDLNEIAGNCGPVTVAQQLCVVQRM
HRSYRFLQLPAGSLFSGL*
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mRNA from alignment at scaffold_1:1169301..1170770+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1656 ID=mRNA_1656|Name=jgi.p|Nanoce1779_2|573011|organism=Nannochloropsis oceanica|type=mRNA|length=1470bp|location=Sequence derived from alignment at scaffold_1:1169301..1170770+ (Nannochloropsis oceanica)
GGGATTGATGACGTCATGAATAGGTAAGCAATTTCGGGGCCTGTCGAGCA
GAGAAAACATTCGCTCACCCCCATTTCATCCATTCCTCCATCCCTGTATT
TTGTCTACCTGCAGCAACAACCTGAATTTCCGTCTCATGGCAATTTTTCC
CGCCGTGCTTGCTCTGTACGGGACGTACCAAGCTTCCAAAGCTGCCATTT
ACAAGTTGACAAAGAAAAAAGGAAGGAGGGAGACAATTATGTTGCTGCGG
TCATTTTTGCTCTCTATGGAGAGGATGCTGAACCTGAGAAATGTCGGCGC
CTCGGAGGTAGGTAGGGAGTGTTGGAATTAATTCGGCACTAGGGATAAAA
CAGGGGCTGATTATCTAAAAAAAGAACCACACACTTTCGCATTTAACTTC
CCGCTTACCACCCATGTCCTTCTCCCTTCTTCCCTTCCTCCCTTCCTCCC
CTAGAACGAGATCAAATACTTGAAGCTTGACCGCACCCCAGTTCTCAAGC
CCATCCATGCCCCTGTCGGTGCAGCTGGTCAATCTCTCTCTCTCTCGCCA
GCTCCGCACCTGAACCGGCACCAGCACCGGCACCACCTGTCCACCTCCGT
TTCTTTGCCAGCAGGAGCTACACATCCACCATCGGCAGCAACAGGAGCAG
CAGTAGGAGTAGGAGTGGGAAGGAAAGACGGGTTATCTCTAGATGAAATT
AGGCAAATGTCTGCTGATAGCAGCGTCAATGGCAGAGGCGAGAGCTCCTC
GGTCTACGAGGACCTCCATAAGGAGAGGGCAGACGGCATTCAAGGACAGA
GGAACGGAGGGAGGGGGATAGAGGAGGAGAAAGACGATGGGAGGGAACCG
CCCAGGATTCAAACTGCTTGCCTGCAGGGCTCGCCGATCAGCAGTGCGGA
GAGCACGTGGGGGGACTTGGAAGGAGGAGGAAGTAATAATAATTACAACA
CAGATTTACGCGTTGTGTTCTTGAGGCCTGAAGACCTGGGGGTGTTGCTA
CTGTTGGTAAATCAATTTGCCGGGGTCATTCAACGGACGAGTAGTCGGTT
TCTGACTGATCTGGAGCTGAGAAATCTGCAGGAGGACTTGAATGAGATCG
CGGGAAACTGCGGGCCGGTGACTGTGGCACAGCAATTGTGTGTGGTGCAA
CGAATGCACCGGAGCTATCGGTTTTTGCAGTTGCCAGCCGGAAGTTTGTT
TTCGGGGTTGTAATGTGGGGAAAGACTGGAAAGAAGAAGGAAAGGCTGGG
ATTGATATGAAAAAATGCCATGAAATGGAGAAATATGGCCGTTGCGGGTG
TTACAGCACCGTCTAAATAGCAAGAGGGCTCTCGAAGTATCACTGGAAAC
ATCAGAAATGTCTGGGTGTGCTCTATGCATATTAAAGAGATGGTGCGATA
ATTAATTAATGGAGTAGATATATATAGAGTAGATATATATAGTGGTATTT
ATCGTCATGGTGAACTTTCG
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Coding sequence (CDS) from alignment at scaffold_1:1169301..1170770+

>mRNA_1656 ID=mRNA_1656|Name=jgi.p|Nanoce1779_2|573011|organism=Nannochloropsis oceanica|type=CDS|length=507bp|location=Sequence derived from alignment at scaffold_1:1169301..1170770+ (Nannochloropsis oceanica)
ATGTCTGCTGATAGCAGCGTCAATGGCAGAGGCGAGAGCTCCTCGGTCTA
CGAGGACCTCCATAAGGAGAGGGCAGACGGCATTCAAGGACAGAGGAACG
GAGGGAGGGGGATAGAGGAGGAGAAAGACGATGGGAGGGAACCGCCCAGG
ATTCAAACTGCTTGCCTGCAGGGCTCGCCGATCAGCAGTGCGGAGAGCAC
GTGGGGGGACTTGGAAGGAGGAGGAAGTAATAATAATTACAACACAGATT
TACGCGTTGTGTTCTTGAGGCCTGAAGACCTGGGGGTGTTGCTACTGTTG
GTAAATCAATTTGCCGGGGTCATTCAACGGACGAGTAGTCGGTTTCTGAC
TGATCTGGAGCTGAGAAATCTGCAGGAGGACTTGAATGAGATCGCGGGAA
ACTGCGGGCCGGTGACTGTGGCACAGCAATTGTGTGTGGTGCAACGAATG
CACCGGAGCTATCGGTTTTTGCAGTTGCCAGCCGGAAGTTTGTTTTCGGG
GTTGTAA
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Synonyms
Publications