jgi.p|Nanoce1779_2|573004, mRNA_1653 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|573004
Unique NamemRNA_1653
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1157
Alignment locationscaffold_1:1164089..1165786 +

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Properties
Property NameValue
TranscriptId573090
TrackFilteredModels2
ProteinId573004
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_1supercontigscaffold_1:1164089..1165786 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|573004gene_1653Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|573004mRNA_1653-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1653CDS_1653Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1653 ID=mRNA_1653|Name=jgi.p|Nanoce1779_2|573004|organism=Nannochloropsis oceanica|type=mRNA|length=1157bp
ACAGGAGAGCGCTCTTCTTCATTGTTTGTCTCGCCTTAGTGAATCATGGC
GCGCGGCCCGAAGAAGCACCTCAAGCGGGTCAATGCCCCCCGGCATTGGA
TGCTGTCCAAGATGGATGGCATCTTTGCCCCCCGTCCCTCCACGGGCCCT
CACAAGCTCCGTGAATCCCTGCCTCTCATTCTCATTCTCCGCAACCGTCT
TAAGTATGCCTTGACCAAGGCAGAGGCTAATGCGATTTGCATGCAGAAGC
TAGTGAAGGTTGATGGGAAGGTCCGCACGGACCTGAACTACCCCGCTGGC
TTCATGGACGTCGTCTCGATTGAGAAGAGCGGGGACGAGTTCCGCCTCCT
CTACGACCCGAAGGGGCGTTTCTACCTGCAACGGTTGGAGGAGGGCAGCG
AGGAGAGGAATTTCAAGCTTTGCCGAGTGAACAAGAACTTGATGTCTGCC
AACAAAATCCCCTACCTGGTGACTCACGACGGTCGTACTCTGCGTTACCC
GGACCCCCTCATTAAGGTGGACGACACGGTGAAGGTTGATGTCCGCACGG
GCAAGATTTTGGACTTCATTAAATTCGACTTGGGCAATCTGGTGTACCTG
ACCCGAGGGCACAACGCGGGGAGAGTGGGAGTGATCCAGCACATTGAGCG
GCACCCGGGCTCGTTCGATATCATCACGGTGAAGGACGCGCAGGGCCACA
CCTTTGCCACGCGTCGACAGAATGTATTTGTGATTGGCGTAGGGAACAAG
CCGATGGTGTCTCTGCCCAAGCAGAAGGGTATCAAGCTCTCGATCGTGGA
GGAGCGCAATGCGCGACGTGCGCATTAAGTCGTGAGAGGAAGGGAAGGAA
GAAGGAAGGAACGAGGGAGTGAGGATGTGCGGACGTGAGCCTCTGTTGTG
GATGTGAGCGTCTGTAGGTTTCTCGATTTGTTCTTCAAGGTGCTCTGGAG
GAGAAAGGAGGGAGAGAGGGAGCGATGTCATCTCCCGAACTTTCCTTTCT
TATCTTCTGGCCTTCTAGCGCGAATTTCTCTCGATAGGGTGAAGAGGGAA
GAGGCAATCATGCCAGGGGGAAGACCCCGAACCAAAACTCACAAACACAT
GAAACCAAAACCACCAAAAAAGGAGAAAAGAAGAAGAAAGGACGAGAACG
CCACAAA
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protein sequence of jgi.p|Nanoce1779_2|573004

>mRNA_1653-protein ID=mRNA_1653-protein|Name=jgi.p|Nanoce1779_2|573004|organism=Nannochloropsis oceanica|type=polypeptide|length=261bp
MARGPKKHLKRVNAPRHWMLSKMDGIFAPRPSTGPHKLRESLPLILILRN
RLKYALTKAEANAICMQKLVKVDGKVRTDLNYPAGFMDVVSIEKSGDEFR
LLYDPKGRFYLQRLEEGSEERNFKLCRVNKNLMSANKIPYLVTHDGRTLR
YPDPLIKVDDTVKVDVRTGKILDFIKFDLGNLVYLTRGHNAGRVGVIQHI
ERHPGSFDIITVKDAQGHTFATRRQNVFVIGVGNKPMVSLPKQKGIKLSI
VEERNARRAH*
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mRNA from alignment at scaffold_1:1164089..1165786+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1653 ID=mRNA_1653|Name=jgi.p|Nanoce1779_2|573004|organism=Nannochloropsis oceanica|type=mRNA|length=1698bp|location=Sequence derived from alignment at scaffold_1:1164089..1165786+ (Nannochloropsis oceanica)
ACAGGAGAGCGCTCTTCTTCATTGTTTGTCTCGCCTTAGTGAATCATGGT
ACGTTTTGGGTCGTCGCGGAAGGGAGGAGGAGGGAGGGGGGGAGGGGGGA
AGGGGAGGTGGAAGAAAAAAAGGGCGTGATGTATGTCTGTCGGCCAACGT
TGTCCCGCTTGTTCACGATGGTCAACGTTCCTGTGCAATGTAAGTGTATA
GCTTTTAAAGGGACGGAGGGGTAAGTGCTGGTCCTTTCATCGCAGGTGCG
GAGAGAGACAGCAGCGTCCGTCAGGACACGAGAAGAAATGAAAGGTTCGG
CCACTTGCTTGGATGGTGAGATGCTTTGTCCCGGCTGCGCAGCTTGGAAC
CGGCGATTGCTGCCAAACCCCGTGTCCTGATGACGAGACAGACACGCAGG
CTCAGGGATGGGGAAGAGCTAGCCGGTCTAATCTCTCTGGGTGTGGACAT
CCTGCTGCCAGAGGCGGACGGATGATTAGCATAGGGACCGCAATGACAGG
GATGACCTCTTTCTTGTTTTTCTCTATAAACCCATCACTCATCCCCTCCC
TCCTTCCCTCCTTCCCTCCTTCCTTGCCTCCCACCTCAGGCGCGCGGCCC
GAAGAAGCACCTCAAGCGGGTCAATGCCCCCCGGCATTGGATGCTGTCCA
AGATGGATGGCATCTTTGCCCCCCGTCCCTCCACGGGCCCTCACAAGCTC
CGTGAATCCCTGCCTCTCATTCTCATTCTCCGCAACCGTCTTAAGTATGC
CTTGACCAAGGCAGAGGCTAATGCGATTTGCATGCAGAAGCTAGTGAAGG
TTGATGGGAAGGTCCGCACGGACCTGAACTACCCCGCTGGCTTCATGGAC
GTCGTCTCGATTGAGAAGAGCGGGGACGAGTTCCGCCTCCTCTACGACCC
GAAGGGGCGTTTCTACCTGCAACGGTTGGAGGAGGGCAGCGAGGAGAGGA
ATTTCAAGCTTTGCCGAGTGAACAAGAACTTGATGTCTGCCAACAAAATC
CCCTACCTGGTGACTCACGACGGTCGTACTCTGCGTTACCCGGACCCCCT
CATTAAGGTGGACGACACGGTGAAGGTTGATGTCCGCACGGGCAAGATTT
TGGACTTCATTAAATTCGACTTGGGCAATCTGGTGTACCTGACCCGAGGG
CACAACGCGGGGAGAGTGGGAGTGATCCAGCACATTGAGCGGCACCCGGG
CTCGTTCGATATCATCACGGTGAAGGACGCGCAGGGCCACACCTTTGCCA
CGCGTCGACAGAATGTATTTGTGATTGGCGTAGGGAACAAGCCGATGGTG
TCTCTGCCCAAGCAGAAGGGTATCAAGCTCTCGATCGTGGAGGAGCGCAA
TGCGCGACGTGCGCATTAAGTCGTGAGAGGAAGGGAAGGAAGAAGGAAGG
AACGAGGGAGTGAGGATGTGCGGACGTGAGCCTCTGTTGTGGATGTGAGC
GTCTGTAGGTTTCTCGATTTGTTCTTCAAGGTGCTCTGGAGGAGAAAGGA
GGGAGAGAGGGAGCGATGTCATCTCCCGAACTTTCCTTTCTTATCTTCTG
GCCTTCTAGCGCGAATTTCTCTCGATAGGGTGAAGAGGGAAGAGGCAATC
ATGCCAGGGGGAAGACCCCGAACCAAAACTCACAAACACATGAAACCAAA
ACCACCAAAAAAGGAGAAAAGAAGAAGAAAGGACGAGAACGCCACAAA
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Coding sequence (CDS) from alignment at scaffold_1:1164089..1165786+

>mRNA_1653 ID=mRNA_1653|Name=jgi.p|Nanoce1779_2|573004|organism=Nannochloropsis oceanica|type=CDS|length=1566bp|location=Sequence derived from alignment at scaffold_1:1164089..1165786+ (Nannochloropsis oceanica)
ATGGCGCGCGGCCCGAAGAAGCACCTCAAGCGGGTCAATGCCCCCCGGCA
TTGGATGCTGTCCAAGATGGATGGCATCTTTGCCCCCCGTCCCTCCACGG
GCCCTCACAAGCTCCGTGAATCCCTGCCTCTCATTCTCATTCTCCGCAAC
CGTCTTAAGTATGCCTTGACCAAGGCAGAGGCTAATGCGATTTGCATGCA
GAAGCTAGTGAAGGTTGATGGGAAGGTCCGCACGGACCTGAACTACCCCG
CTGGCTTCATGGACGTCGTCTCGATTGAGAAGAGCGGGGACGAGTTCCGC
CTCCTCTACGACCCGAAGGGGCGTTTCTACCTGCAACGGTTGGAGGAGGG
CAGCGAGGAGAGGAATTTCAAGCTTTGCCGAGTGAACAAGAACTTGATGT
CTGCCAACAAAATCCCCTACCTGGTGACTCACGACGGTCGTACTCTGCGT
TACCCGGACCCCCTCATTAAGGTGGACGACACGGTGAAGGTTGATGTCCG
CACGGGCAAGATTTTGGACTTCATTAAATTCGACTTGGGCAATCTGGTGT
ACCTGACCCGAGGGCACAACGCGGGGAGAGTGGGAGTGATCCAGCACATT
GAGCGGCACCCGGGCTCGTTCGATATCATCACGGTGAAGGACGCGCAGGG
CCACACCTTTGCCACGCGTCGACAGAATGTATTTGTGATTGGCGTAGGGA
ACAAGCCGATGGTGTCTCTGCCCAAGCAGAAGGGTATCAAGCTCTCGATC
GTGGAGGAGCGCAATGCGCGACGTGCGCATTAAATGGCGCGCGGCCCGAA
GAAGCACCTCAAGCGGGTCAATGCCCCCCGGCATTGGATGCTGTCCAAGA
TGGATGGCATCTTTGCCCCCCGTCCCTCCACGGGCCCTCACAAGCTCCGT
GAATCCCTGCCTCTCATTCTCATTCTCCGCAACCGTCTTAAGTATGCCTT
GACCAAGGCAGAGGCTAATGCGATTTGCATGCAGAAGCTAGTGAAGGTTG
ATGGGAAGGTCCGCACGGACCTGAACTACCCCGCTGGCTTCATGGACGTC
GTCTCGATTGAGAAGAGCGGGGACGAGTTCCGCCTCCTCTACGACCCGAA
GGGGCGTTTCTACCTGCAACGGTTGGAGGAGGGCAGCGAGGAGAGGAATT
TCAAGCTTTGCCGAGTGAACAAGAACTTGATGTCTGCCAACAAAATCCCC
TACCTGGTGACTCACGACGGTCGTACTCTGCGTTACCCGGACCCCCTCAT
TAAGGTGGACGACACGGTGAAGGTTGATGTCCGCACGGGCAAGATTTTGG
ACTTCATTAAATTCGACTTGGGCAATCTGGTGTACCTGACCCGAGGGCAC
AACGCGGGGAGAGTGGGAGTGATCCAGCACATTGAGCGGCACCCGGGCTC
GTTCGATATCATCACGGTGAAGGACGCGCAGGGCCACACCTTTGCCACGC
GTCGACAGAATGTATTTGTGATTGGCGTAGGGAACAAGCCGATGGTGTCT
CTGCCCAAGCAGAAGGGTATCAAGCTCTCGATCGTGGAGGAGCGCAATGC
GCGACGTGCGCATTAA
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Synonyms
Publications