jgi.p|Nanoce1779_2|573001, mRNA_1652 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|573001
Unique NamemRNA_1652
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length339
Alignment locationscaffold_1:1163820..1164699 +

Link to JBrowse

Properties
Property NameValue
TranscriptId573087
TrackFilteredModels2
ProteinId573001
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_1supercontigscaffold_1:1163820..1164699 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|573001gene_1652Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|573001mRNA_1652-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1652CDS_1652Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1652 ID=mRNA_1652|Name=jgi.p|Nanoce1779_2|573001|organism=Nannochloropsis oceanica|type=mRNA|length=339bp
AAGCGATGGCCCTCCGCGGTGCCCTTTTTCTTCTTCCCTATCACGCCACC
CATGCTCGCTACCATTTCCCAATCAAGTCGGCACTGTTTTCTTTGAGCCC
AGGTGTGGGCTTGCATGGAGTGGAGAAGCTGTGGTGGTGGTGCCTTCATC
ACAGCCATTTCTCTTGTCACCAGCCAACTCTCTGCAACTCCCATCATCAT
CCACCCTTCTTCCATGCCTCATTGTTTCTCATGCCCTTCCTGCCGTACAT
CAACCCCACCAACACAATCACAGGAGAGCGCTCTTCTTCATTGTTTGTCT
CGCCTTAGTGAATCATGGCGCGCGGCCCGAAGAAGCACC
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protein sequence of jgi.p|Nanoce1779_2|573001

>mRNA_1652-protein ID=mRNA_1652-protein|Name=jgi.p|Nanoce1779_2|573001|organism=Nannochloropsis oceanica|type=polypeptide|length=101bp
MALRGALFLLPYHATHARYHFPIKSALFSLSPGVGLHGVEKLWWWCLHHS
HFSCHQPTLCNSHHHPPFFHASLFLMPFLPYINPTNTITGERSSSLFVSP
*
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mRNA from alignment at scaffold_1:1163820..1164699+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1652 ID=mRNA_1652|Name=jgi.p|Nanoce1779_2|573001|organism=Nannochloropsis oceanica|type=mRNA|length=880bp|location=Sequence derived from alignment at scaffold_1:1163820..1164699+ (Nannochloropsis oceanica)
AAGCGATGGCCCTCCGCGGTGCCCTTTTTCTTCTTCCCTATCACGCCACC
CATGCTCGCTACCATTTCCCAATCAAGTCGGCACTGTTTTCTTTGAGCCC
AGGTGTGGGCTTGCATGGAGTGGAGAAGCTGTGGTGGTGGTGCCTTCATC
ACAGCCATTTCTCTTGTCACCAGCCAACTCTCTGCAACTCCCATCATCAT
CCACCCTTCTTCCATGCCTCATTGTTTCTCATGCCCTTCCTGCCGTACAT
CAACCCCACCAACACAATCACAGGAGAGCGCTCTTCTTCATTGTTTGTCT
CGCCTTAGTGAATCATGGTACGTTTTGGGTCGTCGCGGAAGGGAGGAGGA
GGGAGGGGGGGAGGGGGGAAGGGGAGGTGGAAGAAAAAAAGGGCGTGATG
TATGTCTGTCGGCCAACGTTGTCCCGCTTGTTCACGATGGTCAACGTTCC
TGTGCAATGTAAGTGTATAGCTTTTAAAGGGACGGAGGGGTAAGTGCTGG
TCCTTTCATCGCAGGTGCGGAGAGAGACAGCAGCGTCCGTCAGGACACGA
GAAGAAATGAAAGGTTCGGCCACTTGCTTGGATGGTGAGATGCTTTGTCC
CGGCTGCGCAGCTTGGAACCGGCGATTGCTGCCAAACCCCGTGTCCTGAT
GACGAGACAGACACGCAGGCTCAGGGATGGGGAAGAGCTAGCCGGTCTAA
TCTCTCTGGGTGTGGACATCCTGCTGCCAGAGGCGGACGGATGATTAGCA
TAGGGACCGCAATGACAGGGATGACCTCTTTCTTGTTTTTCTCTATAAAC
CCATCACTCATCCCCTCCCTCCTTCCCTCCTTCCCTCCTTCCTTGCCTCC
CACCTCAGGCGCGCGGCCCGAAGAAGCACC
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Coding sequence (CDS) from alignment at scaffold_1:1163820..1164699+

>mRNA_1652 ID=mRNA_1652|Name=jgi.p|Nanoce1779_2|573001|organism=Nannochloropsis oceanica|type=CDS|length=303bp|location=Sequence derived from alignment at scaffold_1:1163820..1164699+ (Nannochloropsis oceanica)
ATGGCCCTCCGCGGTGCCCTTTTTCTTCTTCCCTATCACGCCACCCATGC
TCGCTACCATTTCCCAATCAAGTCGGCACTGTTTTCTTTGAGCCCAGGTG
TGGGCTTGCATGGAGTGGAGAAGCTGTGGTGGTGGTGCCTTCATCACAGC
CATTTCTCTTGTCACCAGCCAACTCTCTGCAACTCCCATCATCATCCACC
CTTCTTCCATGCCTCATTGTTTCTCATGCCCTTCCTGCCGTACATCAACC
CCACCAACACAATCACAGGAGAGCGCTCTTCTTCATTGTTTGTCTCGCCT
TAG
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Synonyms
Publications