jgi.p|Nanoce1779_2|572998, mRNA_1651 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|572998
Unique NamemRNA_1651
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length2035
Alignment locationscaffold_1:1161486..1163520 -

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Properties
Property NameValue
TranscriptId573084
TrackFilteredModels2
ProteinId572998
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_1supercontigscaffold_1:1161486..1163520 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|572998gene_1651Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|572998mRNA_1651-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1651CDS_1651Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1651 ID=mRNA_1651|Name=jgi.p|Nanoce1779_2|572998|organism=Nannochloropsis oceanica|type=mRNA|length=2035bp
AGCCTACGTCCCCACTCCAATCACGCCACAACGACCAAACCAAAGCTCAA
GTCCCATGGTCTTCGCAAAACAGTACACGCGAAAAGATCTTGCCATCACG
GCGCCCACTGCAGGGCCTCGCGAAGTTGCTTCCCGCTCCTCTTCCCGAGT
GTTTGCCTCCCTCATGGGCATCGACGGCCTGTTTGACAACCACATTTCCC
CCGCCCTTGCCACCCGGGAGCTTCTCCGCCTGTCCGCGGCCTGCAAAGAG
CTGCAGAAGCCTGCCCGTGCCCTTGTTACAGAAGTGTGCATCCGTCGAGA
TATTGTACGTCGAAGCGCCGTCCCCCGCGCGGTGCGAATAGGCCTTCCCC
TCCTCCCTGGCCTTCGTGTCCTAGACCTGTCCTTCGTTTCCCTCGCTCCG
CGCGACTATACCGCCATGGCCAGTGCATTGCTCTCGCCTGGGACAAGAAC
AAATGCGCGGCTGAAGACTTTTCGCTTGAGGCAACGGGCGGGGTATTCAC
CTGGTCCAATTCCTCGGGTAAGGTTTGGGTAAAGTATGTTGGTCGACAGC
ACCTACAGCAGCAGCAGCAGTAGTAGCTTCACCGCCAATACCACTACTTT
CATATTATCACCTAACTGCGTATGTACACTTTCAAAAACAAACAAATAAA
GAAGAAAATGCTACCTTCCCTCCTCTTACCCCGACGATAAAAACAAAACA
GGAGTCAGATCTGTGCCTGCTTCGTTTTTTCCAAGCCGTTGTGGCCACGC
AGGCCTGGCCTCTACTAGAAGATTTAGACCTATCAGGGCACTGCATAGGC
GATGCTGCTGTCGAGCTTTTGGTGTCCTGGATGGAAGGTACTGCGGGGGG
CAGCAGCAGCAGCAGCGGTCAATGGCAGCAGCGTCGGTTGAAGCGCCTCG
GTCTGAGTACCATTAACATGTCGGAGGTAGGCTTGATGCATCTACTAAAG
CCATTGGCGAAGGGAAAATGTCCCGTTTTGTTGCGCATGGACCTCTCCGG
GAATTCTTGTGGAAGCAGTGGTGGTGGGGGTGATGGAGGAGGAGACATGG
AGGGAGTAGGAGGCGTAGGGGAAGGGACGAAGAGGAAGTACAAGGAGGCC
CTGTGGACGGCAGCGTTGTGCGGAATGCCGCATTTGCTGGAGCTGGATTT
GAACGAGAGTGGGGTGGAGGGAGAGGTCACACTAGCCTTGGCTCGATCCT
TGACTCAAGGCGCCGGGCGGAAGATGAAGCGATTGTCGCTGGGTGGATGT
TCTCTGACGGATCAGGATACCCGGAAATTGTGGGAGGTCGTGAGGGGAGG
AGGAGTGCCGTGGCTACAGGACCTGAATTTGAGGCAAGCATGCTTAGAGA
GAGAGGCTTTCATGGGGTTGGCGGCTGGGCTGGAAAGAGGGCGCTTGAGG
TATCTGCGACGTTTGGACTTGTCGGAAAATCTGTTGACGTATGAAGGTAG
ATTGCATCCTCCCTCACTACCCCTCTATTCCTATTCCCCTAATTTTTTGC
TTTACTTTCCACACGCCCCGTTCTCGATAGGTGCCAGCTAAGCCATGCTT
GCTGACGTCCTCCTTCCCTTCCTCCCTTCCCCTCTCCCTCCCTTCCCCCC
TCACTCCTTTCCTCCCTCCCTCCTTCCCAGGCATGCAAGACATCGTGAAG
GCCCTCCAAAATGGAGCAGCGCCACAGCTCCGTTCACTCTGCTTGGGCAG
CACTGGGCATGAATTCGAAGAAGTGAATGAGATGGTGGGACTGTGGTGTG
CCAAGCTGAAGAATGACGGAAATTGTCCTCAGTTGGTGCTCCAAAGCAAG
GAGGAAGGGAAGGGGGGAGGAGAGGGGGGAGGGGTTGTCTCGATGGAGGT
GGAAGAAGACAAGGAAGAGGAGGAGGTAGAGCAGGAGGAGAAGGAGAACA
AAGGAAATAAGGCCGGTGGAGCGGCTAACGCTCGAAAGTGGGTGAAAGCG
TGTGTCAGTGCATGACATGACGCTGACGAGACACAGGAAACCCTGCGAGG
CACTCAAAGAACCAGAGAAGAGCAGACAATCTGTG
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protein sequence of jgi.p|Nanoce1779_2|572998

>mRNA_1651-protein ID=mRNA_1651-protein|Name=jgi.p|Nanoce1779_2|572998|organism=Nannochloropsis oceanica|type=polypeptide|length=237bp
MEGTAGGSSSSSGQWQQRRLKRLGLSTINMSEVGLMHLLKPLAKGKCPVL
LRMDLSGNSCGSSGGGGDGGGDMEGVGGVGEGTKRKYKEALWTAALCGMP
HLLELDLNESGVEGEVTLALARSLTQGAGRKMKRLSLGGCSLTDQDTRKL
WEVVRGGGVPWLQDLNLRQACLEREAFMGLAAGLERGRLRYLRRLDLSEN
LLTYEGRLHPPSLPLYSYSPNFLLYFPHAPFSIGAS*
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mRNA from alignment at scaffold_1:1161486..1163520-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1651 ID=mRNA_1651|Name=jgi.p|Nanoce1779_2|572998|organism=Nannochloropsis oceanica|type=mRNA|length=2035bp|location=Sequence derived from alignment at scaffold_1:1161486..1163520- (Nannochloropsis oceanica)
AGCCTACGTCCCCACTCCAATCACGCCACAACGACCAAACCAAAGCTCAA
GTCCCATGGTCTTCGCAAAACAGTACACGCGAAAAGATCTTGCCATCACG
GCGCCCACTGCAGGGCCTCGCGAAGTTGCTTCCCGCTCCTCTTCCCGAGT
GTTTGCCTCCCTCATGGGCATCGACGGCCTGTTTGACAACCACATTTCCC
CCGCCCTTGCCACCCGGGAGCTTCTCCGCCTGTCCGCGGCCTGCAAAGAG
CTGCAGAAGCCTGCCCGTGCCCTTGTTACAGAAGTGTGCATCCGTCGAGA
TATTGTACGTCGAAGCGCCGTCCCCCGCGCGGTGCGAATAGGCCTTCCCC
TCCTCCCTGGCCTTCGTGTCCTAGACCTGTCCTTCGTTTCCCTCGCTCCG
CGCGACTATACCGCCATGGCCAGTGCATTGCTCTCGCCTGGGACAAGAAC
AAATGCGCGGCTGAAGACTTTTCGCTTGAGGCAACGGGCGGGGTATTCAC
CTGGTCCAATTCCTCGGGTAAGGTTTGGGTAAAGTATGTTGGTCGACAGC
ACCTACAGCAGCAGCAGCAGTAGTAGCTTCACCGCCAATACCACTACTTT
CATATTATCACCTAACTGCGTATGTACACTTTCAAAAACAAACAAATAAA
GAAGAAAATGCTACCTTCCCTCCTCTTACCCCGACGATAAAAACAAAACA
GGAGTCAGATCTGTGCCTGCTTCGTTTTTTCCAAGCCGTTGTGGCCACGC
AGGCCTGGCCTCTACTAGAAGATTTAGACCTATCAGGGCACTGCATAGGC
GATGCTGCTGTCGAGCTTTTGGTGTCCTGGATGGAAGGTACTGCGGGGGG
CAGCAGCAGCAGCAGCGGTCAATGGCAGCAGCGTCGGTTGAAGCGCCTCG
GTCTGAGTACCATTAACATGTCGGAGGTAGGCTTGATGCATCTACTAAAG
CCATTGGCGAAGGGAAAATGTCCCGTTTTGTTGCGCATGGACCTCTCCGG
GAATTCTTGTGGAAGCAGTGGTGGTGGGGGTGATGGAGGAGGAGACATGG
AGGGAGTAGGAGGCGTAGGGGAAGGGACGAAGAGGAAGTACAAGGAGGCC
CTGTGGACGGCAGCGTTGTGCGGAATGCCGCATTTGCTGGAGCTGGATTT
GAACGAGAGTGGGGTGGAGGGAGAGGTCACACTAGCCTTGGCTCGATCCT
TGACTCAAGGCGCCGGGCGGAAGATGAAGCGATTGTCGCTGGGTGGATGT
TCTCTGACGGATCAGGATACCCGGAAATTGTGGGAGGTCGTGAGGGGAGG
AGGAGTGCCGTGGCTACAGGACCTGAATTTGAGGCAAGCATGCTTAGAGA
GAGAGGCTTTCATGGGGTTGGCGGCTGGGCTGGAAAGAGGGCGCTTGAGG
TATCTGCGACGTTTGGACTTGTCGGAAAATCTGTTGACGTATGAAGGTAG
ATTGCATCCTCCCTCACTACCCCTCTATTCCTATTCCCCTAATTTTTTGC
TTTACTTTCCACACGCCCCGTTCTCGATAGGTGCCAGCTAAGCCATGCTT
GCTGACGTCCTCCTTCCCTTCCTCCCTTCCCCTCTCCCTCCCTTCCCCCC
TCACTCCTTTCCTCCCTCCCTCCTTCCCAGGCATGCAAGACATCGTGAAG
GCCCTCCAAAATGGAGCAGCGCCACAGCTCCGTTCACTCTGCTTGGGCAG
CACTGGGCATGAATTCGAAGAAGTGAATGAGATGGTGGGACTGTGGTGTG
CCAAGCTGAAGAATGACGGAAATTGTCCTCAGTTGGTGCTCCAAAGCAAG
GAGGAAGGGAAGGGGGGAGGAGAGGGGGGAGGGGTTGTCTCGATGGAGGT
GGAAGAAGACAAGGAAGAGGAGGAGGTAGAGCAGGAGGAGAAGGAGAACA
AAGGAAATAAGGCCGGTGGAGCGGCTAACGCTCGAAAGTGGGTGAAAGCG
TGTGTCAGTGCATGACATGACGCTGACGAGACACAGGAAACCCTGCGAGG
CACTCAAAGAACCAGAGAAGAGCAGACAATCTGTG
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Coding sequence (CDS) from alignment at scaffold_1:1161486..1163520-

>mRNA_1651 ID=mRNA_1651|Name=jgi.p|Nanoce1779_2|572998|organism=Nannochloropsis oceanica|type=CDS|length=711bp|location=Sequence derived from alignment at scaffold_1:1161486..1163520- (Nannochloropsis oceanica)
ATGGAAGGTACTGCGGGGGGCAGCAGCAGCAGCAGCGGTCAATGGCAGCA
GCGTCGGTTGAAGCGCCTCGGTCTGAGTACCATTAACATGTCGGAGGTAG
GCTTGATGCATCTACTAAAGCCATTGGCGAAGGGAAAATGTCCCGTTTTG
TTGCGCATGGACCTCTCCGGGAATTCTTGTGGAAGCAGTGGTGGTGGGGG
TGATGGAGGAGGAGACATGGAGGGAGTAGGAGGCGTAGGGGAAGGGACGA
AGAGGAAGTACAAGGAGGCCCTGTGGACGGCAGCGTTGTGCGGAATGCCG
CATTTGCTGGAGCTGGATTTGAACGAGAGTGGGGTGGAGGGAGAGGTCAC
ACTAGCCTTGGCTCGATCCTTGACTCAAGGCGCCGGGCGGAAGATGAAGC
GATTGTCGCTGGGTGGATGTTCTCTGACGGATCAGGATACCCGGAAATTG
TGGGAGGTCGTGAGGGGAGGAGGAGTGCCGTGGCTACAGGACCTGAATTT
GAGGCAAGCATGCTTAGAGAGAGAGGCTTTCATGGGGTTGGCGGCTGGGC
TGGAAAGAGGGCGCTTGAGGTATCTGCGACGTTTGGACTTGTCGGAAAAT
CTGTTGACGTATGAAGGTAGATTGCATCCTCCCTCACTACCCCTCTATTC
CTATTCCCCTAATTTTTTGCTTTACTTTCCACACGCCCCGTTCTCGATAG
GTGCCAGCTAA
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Synonyms
Publications