jgi.p|Nanoce1779_2|576418, mRNA_165 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|576418
Unique NamemRNA_165
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length915
Alignment locationscaffold_3:421469..422669 +

Link to JBrowse

Properties
Property NameValue
TranscriptId576504
TrackFilteredModels2
ProteinId576418
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_3supercontigscaffold_3:421469..422669 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|576418gene_165Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|576418mRNA_165-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_165CDS_165Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_165 ID=mRNA_165|Name=jgi.p|Nanoce1779_2|576418|organism=Nannochloropsis oceanica|type=mRNA|length=915bp
ACGACAGCCAGCAAGGTACTAAGAGGCAAACCTCCTGCGACAACAATTAT
AGCACCTCGTCACACAAATAAGAACAAGCCATGGCGGCATCCTCGTGCCG
GGAAGTTGTCCTCAATATTTACGAATTGACGGATGAGAAAGGCAGCGGTT
CGTGGATGCGGCGGGTAGGCTTGGGGACATGGCATACAGGCGTTGAAGTA
GGTGGGGTGGAGTACACGTTTGCTCAAAACGGTATCTTCTTTCACGTGCC
GAGGATGCCGATTGTCGCGACAGGGCAGGTAATAACGCTGAAAGAGAGCA
TGCCTATGGGCGAGCACGTCGGGAGCGCCAATGAGGTGCACGGGATCATC
AATGAGCTTCGGGAGGAATTCGGGCCGAATGCGTACAATATCACCAACCG
CAACTGCAACCACTTCAGCGACGCCCTTTGCAAGACGCTGGTCGGCGCCT
CAATCCCTGCTTGGGTCAATCGCCCCGCCAAAATTGCATCTGTTTTTTCC
ATCGGTGTCTTTGGTGGTCGGAATAAGAAGGAGAAGGAGGGAGAGAAGGA
GGGAGGAGGGGTGACCAAAGCGGAGAAGGCGGCGGCGGGGAAGAGAAAAA
AGTTGACGGAGGAGCAGAAGGCACGGTTGAAAGCGATCAAAGGCAAGACG
ACGAGGGGTACGTAGCGAGAGAGGACGCTTGTGGATGTGCAATGGGGGTG
AGCTATTGTGGAACTGCCTGTCCGCGCGAAGGAAAGAGGGAGCGAGGGTA
AGGGGAGGGAAGGAGAGGGTTGAATGTGTCGATTAACTGTGGTTGTTTAA
AATGTATGATCAAGAGAAGCACTGGCAGAGATAGAGGACCAAGATGTGTC
AGTCGAAAAATCAGAAAGCTAAAGGAGGAAAAGAAGGAAAAATTGTTTCG
AATCAGAAGTAAATC
back to top

protein sequence of jgi.p|Nanoce1779_2|576418

>mRNA_165-protein ID=mRNA_165-protein|Name=jgi.p|Nanoce1779_2|576418|organism=Nannochloropsis oceanica|type=polypeptide|length=195bp
MAASSCREVVLNIYELTDEKGSGSWMRRVGLGTWHTGVEVGGVEYTFAQN
GIFFHVPRMPIVATGQVITLKESMPMGEHVGSANEVHGIINELREEFGPN
AYNITNRNCNHFSDALCKTLVGASIPAWVNRPAKIASVFSIGVFGGRNKK
EKEGEKEGGGVTKAEKAAAGKRKKLTEEQKARLKAIKGKTTRGT*
back to top

mRNA from alignment at scaffold_3:421469..422669+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_165 ID=mRNA_165|Name=jgi.p|Nanoce1779_2|576418|organism=Nannochloropsis oceanica|type=mRNA|length=1201bp|location=Sequence derived from alignment at scaffold_3:421469..422669+ (Nannochloropsis oceanica)
ACGACAGCCAGCAAGGTACTAAGAGGCAAACCTCCTGCGACAACAATTAT
AGCACCTCGTCACACAAATAAGAACAAGCCATGGCGGCATCCTCGTGCCG
GGAAGTTGTCCTCAATATTTACGAATTGACGGATGAGAAAGGCAGCGGTT
CGTGGATGCGGCGGGTAGGCTTGGGGACATGGCATACAGGCGTTGAAGTA
GGTGGGGTGGAGTACACGTTTGCTCAAAACGGTATCTTCTTTCACGTGCC
GAGGATGCCGATTGTCGCGACAGGGCAGGTAATAACGCTGAAAGAGAGCA
TGCCTATGGGCGAGCACGTCGGGAGCGCCAATGAGGTGCGTTACTTACTG
CTTCCTTTCTTTTTCTTGCACATGTTTCATTTTCCAGGGAGACAGCGCGA
TGAAAGAAAGGATAAGTCATCTGTATAATCTTGCACTCATTCACATATTC
TAGGTGCACGGGATCATCAATGAGCTTCGGGAGGAATTCGGGCCGAATGC
GTACAATGTGAGAAAAGGAGGGAAGGAGGCAGTGCTTAGGTGGCGGCAGA
GAGGAAGGGCATCGAAGAGCCCTCAAGAAAGCAGAACCCTCCGAATGCAT
GCTGTCACATGTCTTTCTCCAAGCACTCTCACACGAAATACTATTGTTTT
ATCTCTTGTTCTTCTCTCCTCGCAGATCACCAACCGCAACTGCAACCACT
TCAGCGACGCCCTTTGCAAGACGCTGGTCGGCGCCTCAATCCCTGCTTGG
GTCAATCGCCCCGCCAAAATTGCATCTGTTTTTTCCATCGGTGTCTTTGG
TGGTCGGAATAAGAAGGAGAAGGAGGGAGAGAAGGAGGGAGGAGGGGTGA
CCAAAGCGGAGAAGGCGGCGGCGGGGAAGAGAAAAAAGTTGACGGAGGAG
CAGAAGGCACGGTTGAAAGCGATCAAAGGCAAGACGACGAGGGGTACGTA
GCGAGAGAGGACGCTTGTGGATGTGCAATGGGGGTGAGCTATTGTGGAAC
TGCCTGTCCGCGCGAAGGAAAGAGGGAGCGAGGGTAAGGGGAGGGAAGGA
GAGGGTTGAATGTGTCGATTAACTGTGGTTGTTTAAAATGTATGATCAAG
AGAAGCACTGGCAGAGATAGAGGACCAAGATGTGTCAGTCGAAAAATCAG
AAAGCTAAAGGAGGAAAAGAAGGAAAAATTGTTTCGAATCAGAAGTAAAT
C
back to top

Coding sequence (CDS) from alignment at scaffold_3:421469..422669+

>mRNA_165 ID=mRNA_165|Name=jgi.p|Nanoce1779_2|576418|organism=Nannochloropsis oceanica|type=CDS|length=1755bp|location=Sequence derived from alignment at scaffold_3:421469..422669+ (Nannochloropsis oceanica)
ATGGCGGCATCCTCGTGCCGGGAAGTTGTCCTCAATATTTACGAATTGAC
GGATGAGAAAGGCAGCGGTTCGTGGATGCGGCGGGTAGGCTTGGGGACAT
GGCATACAGGCGTTGAAGTAGGTGGGGTGGAGTACACGTTTGCTCAAAAC
GGTATCTTCTTTCACGTGCCGAGGATGCCGATTGTCGCGACAGGGCAGGT
AATAACGCTGAAAGAGAGCATGCCTATGGGCGAGCACGTCGGGAGCGCCA
ATGAGGTGCACGGGATCATCAATGAGCTTCGGGAGGAATTCGGGCCGAAT
GCGTACAATATCACCAACCGCAACTGCAACCACTTCAGCGACGCCCTTTG
CAAGACGCTGGTCGGCGCCTCAATCCCTGCTTGGGTCAATCGCCCCGCCA
AAATTGCATCTGTTTTTTCCATCGGTGTCTTTGGTGGTCGGAATAAGAAG
GAGAAGGAGGGAGAGAAGGAGGGAGGAGGGGTGACCAAAGCGGAGAAGGC
GGCGGCGGGGAAGAGAAAAAAGTTGACGGAGGAGCAGAAGGCACGGTTGA
AAGCGATCAAAGGCAAGACGACGAGGGGTACGTAGATGGCGGCATCCTCG
TGCCGGGAAGTTGTCCTCAATATTTACGAATTGACGGATGAGAAAGGCAG
CGGTTCGTGGATGCGGCGGGTAGGCTTGGGGACATGGCATACAGGCGTTG
AAGTAGGTGGGGTGGAGTACACGTTTGCTCAAAACGGTATCTTCTTTCAC
GTGCCGAGGATGCCGATTGTCGCGACAGGGCAGGTAATAACGCTGAAAGA
GAGCATGCCTATGGGCGAGCACGTCGGGAGCGCCAATGAGGTGCACGGGA
TCATCAATGAGCTTCGGGAGGAATTCGGGCCGAATGCGTACAATATCACC
AACCGCAACTGCAACCACTTCAGCGACGCCCTTTGCAAGACGCTGGTCGG
CGCCTCAATCCCTGCTTGGGTCAATCGCCCCGCCAAAATTGCATCTGTTT
TTTCCATCGGTGTCTTTGGTGGTCGGAATAAGAAGGAGAAGGAGGGAGAG
AAGGAGGGAGGAGGGGTGACCAAAGCGGAGAAGGCGGCGGCGGGGAAGAG
AAAAAAGTTGACGGAGGAGCAGAAGGCACGGTTGAAAGCGATCAAAGGCA
AGACGACGAGGGGTACGTAGATGGCGGCATCCTCGTGCCGGGAAGTTGTC
CTCAATATTTACGAATTGACGGATGAGAAAGGCAGCGGTTCGTGGATGCG
GCGGGTAGGCTTGGGGACATGGCATACAGGCGTTGAAGTAGGTGGGGTGG
AGTACACGTTTGCTCAAAACGGTATCTTCTTTCACGTGCCGAGGATGCCG
ATTGTCGCGACAGGGCAGGTAATAACGCTGAAAGAGAGCATGCCTATGGG
CGAGCACGTCGGGAGCGCCAATGAGGTGCACGGGATCATCAATGAGCTTC
GGGAGGAATTCGGGCCGAATGCGTACAATATCACCAACCGCAACTGCAAC
CACTTCAGCGACGCCCTTTGCAAGACGCTGGTCGGCGCCTCAATCCCTGC
TTGGGTCAATCGCCCCGCCAAAATTGCATCTGTTTTTTCCATCGGTGTCT
TTGGTGGTCGGAATAAGAAGGAGAAGGAGGGAGAGAAGGAGGGAGGAGGG
GTGACCAAAGCGGAGAAGGCGGCGGCGGGGAAGAGAAAAAAGTTGACGGA
GGAGCAGAAGGCACGGTTGAAAGCGATCAAAGGCAAGACGACGAGGGGTA
CGTAG
back to top
Synonyms
Publications