jgi.p|Nanoce1779_2|13274, mRNA_1648 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|13274
Unique Name	mRNA_1648
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1799
Alignment location	scaffold_1:1150673..1152689 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	13360
Track	FilteredModels2
ProteinId	13274

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_1	supercontig	scaffold_1:1150673..1152689 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|13274	gene_1648	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|13274	mRNA_1648-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_1648	CDS_1648	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_1:1150673..1152689+
coding sequence from alignment at scaffold_1:1150673..1152689+

mRNA sequence

>mRNA_1648 ID=mRNA_1648|Name=jgi.p|Nanoce1779_2|13274|organism=Nannochloropsis oceanica|type=mRNA|length=1799bp
ATCTCCTTCCCGATAGGCAGCCTTAGGCGAGGAGACGTGGCACCTCGCGA
CACGATGCGCGCGTGCTGCGATTCCCATAATTCTTTTTCTACGTTCTCTT
CCACCCTTAAGAAACGTGGCCCACCCGCATCCTCCAAGGACCGCAGCCAG
TCTGTACCCGCTTCCCACGAATTCATCTCGTCGGGGGTGAGGGAAGACGC
GTTGACCCACCCCCGAACGTGCATCTTGTAGATGTCAGAGACCAACCATG
GCTCCTCGTAGGACAAGGTTATCGCACCCCTGCTCTGCAAACGCGAGGTC
TTGCATTTTGGGGAGTAGTTTGGCCGTAACCTTCATGATCCAAGACTCAC
AATCATGCAGAACGACACCCGCTTCTTCGATGAGGCTTCCTACCTTTCCC
AAATTCGAGAGGAGGCTTTGACGCAAGAATCGACAATCTTCCACACTGCA
CACTGCCCACAAAATCGCTTCCTTCTCGCTTCTTCCAATCAAGGCCGTCT
CGCTATTTGGGACTTGTCCTCCTACCTCTTCCCAAAAGGGCCCTCCTCCT
CCTTGTCCTCGCCCTCCTTCTACAGTTCTACTTCCTATCCGATTGCTTCC
TCCTCCTCTTATCCCTTAGTATTGCAAGGATTCCAGCGCCAGCTGCATCT
CAACCAAGCGCGCCTCTACTCTGCAGAATTACGTCGGAAAGGCTACCCCT
GTCTGAGCCTGCAAGTCTCACATCATGCCATCAATCATATCCTGTTTCTT
GGGCAAGACACTGCTCAGCCTTTGTTGGTCCTTGCGGGGGACGATGGCAT
TTACTCTTGGCCATGGAAAACAATTCTGAATCTCCTGCCCCGCACGTGTG
ATGAGGAGGACGGGGTCGAGGGGACAGACAATGAGCCATGCTCTTCGACA
ACCATAAACATCGGTCCTCCTTCCTCCATTCTCAAAGCCCTCCCCTCGCA
AAAAGCCTTCCCATTCCTCACGGAATCCAACCAAATCACTTCCTCCCTTC
CGCCCTCTTCCTCCTCTTCCTCAATCTTTAGTGCATGCGGTGACGCCCTT
GTTCGCAATTGGGATATCGAAACACAACAATGCACTTCTTTGCTGATAGG
ACATACAGGTTATGTTCACGCCGTCAAGAGCTTAGGCATTGAAACGACAG
CACCAGGGGTTGTAGTCTCGGGGGGGGAAGATGGGATGGTGGGGGTGTGG
GATGTGAGGACTGGTGGTGGAGGCAGGAAGGGTAAAGGAGGGAAAGGAGG
GGGTTCATTGGTCAGGATGATGGATGGCTGGGCATCGGCGGGGGTGATCA
GCAGTAGTAACAGAAGTAGTAGCAGCAGCGACAAGGAAGGACGGAGCCAG
GCTCCGTCTTGGGTGGCCTCCTTGGATGTGGATCGAGGAGGGAATTTTTT
GGTTGCAGGAGGAGGGGTGGAAGGAGGAGATGGAGGAGGAAGAGGGGGGG
GCAACGGGGGGGTACCGTTTGGGTACTTATCTGTTTTTCATTTGCCGAGT
TTTTCGTTGGTGAGTTGCGGAAGGAGCGATTGTGTGGTTCATGCGGTGGG
TTTCGGGCAGGAGAAGATTGTGAGTGTCGGAAATGAAAGACAGGCATTGC
ATTGGTCGAGGCCGGGGTTGGAAGGGGCGGCGAGGGTCATGACGGGTATC
CCCTCAGTGTTTTCGATGACGATGAGAGAAGGGCCTGCGGTGGGAGACGG
AGTGATGGTGTATGCGGGGAGGGCGGGCCACGTGAGTGTGTTCGTGAATC
CGGAGCATTGTGCGTTCAATCTGAAATTTCGGTAACGAAGCGTAGAGGG

protein sequence of jgi.p|Nanoce1779_2|13274

>mRNA_1648-protein ID=mRNA_1648-protein|Name=jgi.p|Nanoce1779_2|13274|organism=Nannochloropsis oceanica|type=polypeptide|length=477bp
MQNDTRFFDEASYLSQIREEALTQESTIFHTAHCPQNRFLLASSNQGRLA
IWDLSSYLFPKGPSSSLSSPSFYSSTSYPIASSSSYPLVLQGFQRQLHLN
QARLYSAELRRKGYPCLSLQVSHHAINHILFLGQDTAQPLLVLAGDDGIY
SWPWKTILNLLPRTCDEEDGVEGTDNEPCSSTTINIGPPSSILKALPSQK
AFPFLTESNQITSSLPPSSSSSSIFSACGDALVRNWDIETQQCTSLLIGH
TGYVHAVKSLGIETTAPGVVVSGGEDGMVGVWDVRTGGGGRKGKGGKGGG
SLVRMMDGWASAGVISSSNRSSSSSDKEGRSQAPSWVASLDVDRGGNFLV
AGGGVEGGDGGGRGGGNGGVPFGYLSVFHLPSFSLVSCGRSDCVVHAVGF
GQEKIVSVGNERQALHWSRPGLEGAARVMTGIPSVFSMTMREGPAVGDGV
MVYAGRAGHVSVFVNPEHCAFNLKFR*

mRNA from alignment at scaffold_1:1150673..1152689+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_1648 ID=mRNA_1648|Name=jgi.p|Nanoce1779_2|13274|organism=Nannochloropsis oceanica|type=mRNA|length=2017bp|location=Sequence derived from alignment at scaffold_1:1150673..1152689+ (Nannochloropsis oceanica)
ATCTCCTTCCCGATAGGCAGCCTTAGGCGAGGAGACGTGGCACCTCGCGA
CACGATGCGCGCGTGCTGCGATTCCCATAATTCTTTTTCTACGTTCTCTT
CCACCCTTAAGAAACGTGGCCCACCCGCATCCTCCAAGGACCGCAGCCAG
TCTGTACCCGCTTCCCACGAATTCATCTCGTCGGGGGTGAGGGAAGACGC
GTTGACCCACCCCCGAACGTGCATCTTGTAGATGTCAGAGACCAACCATG
GCTCCTCGTAGGACAAGGTTATCGCACCCCTGCTCTGCAAACGCGAGGTC
TTGCATTTTGGGGAGTAGTTTGGCCGTAACCTTCATGATCCAAGGTAAGG
CTGTGTCTGTGGGGAAAAAATAAATAAAAAGTTACCAACCTCCTCCCAAC
CTTATTACGCTAGCACACAGCAATGTCCACACAGATAGACCTTCCTTTGC
TAGGCCATGCGAAGATGCGCGATGGCATTCGACAGACACAATCAAAGTGG
TTATCGTACCCTACCAGCCCCCAAGTCTCCTCACTCCTCCCAACCTCTCT
ATATCATCGCAGACTCACAATCATGCAGAACGACACCCGCTTCTTCGATG
AGGCTTCCTACCTTTCCCAAATTCGAGAGGAGGCTTTGACGCAAGAATCG
ACAATCTTCCACACTGCACACTGCCCACAAAATCGCTTCCTTCTCGCTTC
TTCCAATCAAGGCCGTCTCGCTATTTGGGACTTGTCCTCCTACCTCTTCC
CAAAAGGGCCCTCCTCCTCCTTGTCCTCGCCCTCCTTCTACAGTTCTACT
TCCTATCCGATTGCTTCCTCCTCCTCTTATCCCTTAGTATTGCAAGGATT
CCAGCGCCAGCTGCATCTCAACCAAGCGCGCCTCTACTCTGCAGAATTAC
GTCGGAAAGGCTACCCCTGTCTGAGCCTGCAAGTCTCACATCATGCCATC
AATCATATCCTGTTTCTTGGGCAAGACACTGCTCAGCCTTTGTTGGTCCT
TGCGGGGGACGATGGCATTTACTCTTGGCCATGGAAAACAATTCTGAATC
TCCTGCCCCGCACGTGTGATGAGGAGGACGGGGTCGAGGGGACAGACAAT
GAGCCATGCTCTTCGACAACCATAAACATCGGTCCTCCTTCCTCCATTCT
CAAAGCCCTCCCCTCGCAAAAAGCCTTCCCATTCCTCACGGAATCCAACC
AAATCACTTCCTCCCTTCCGCCCTCTTCCTCCTCTTCCTCAATCTTTAGT
GCATGCGGTGACGCCCTTGTTCGCAATTGGGATATCGAAACACAACAATG
CACTTCTTTGCTGATAGGACATACAGGTTATGTTCACGCCGTCAAGAGCT
TAGGCATTGAAACGACAGCACCAGGGGTTGTAGTCTCGGGGGGGGAAGAT
GGGATGGTGGGGGTGTGGGATGTGAGGACTGGTGGTGGAGGCAGGAAGGG
TAAAGGAGGGAAAGGAGGGGGTTCATTGGTCAGGATGATGGATGGCTGGG
CATCGGCGGGGGTGATCAGCAGTAGTAACAGAAGTAGTAGCAGCAGCGAC
AAGGAAGGACGGAGCCAGGCTCCGTCTTGGGTGGCCTCCTTGGATGTGGA
TCGAGGAGGGAATTTTTTGGTTGCAGGAGGAGGGGTGGAAGGAGGAGATG
GAGGAGGAAGAGGGGGGGGCAACGGGGGGGTACCGTTTGGGTACTTATCT
GTTTTTCATTTGCCGAGTTTTTCGTTGGTGAGTTGCGGAAGGAGCGATTG
TGTGGTTCATGCGGTGGGTTTCGGGCAGGAGAAGATTGTGAGTGTCGGAA
ATGAAAGACAGGCATTGCATTGGTCGAGGCCGGGGTTGGAAGGGGCGGCG
AGGGTCATGACGGGTATCCCCTCAGTGTTTTCGATGACGATGAGAGAAGG
GCCTGCGGTGGGAGACGGAGTGATGGTGTATGCGGGGAGGGCGGGCCACG
TGAGTGTGTTCGTGAATCCGGAGCATTGTGCGTTCAATCTGAAATTTCGG
TAACGAAGCGTAGAGGG

Coding sequence (CDS) from alignment at scaffold_1:1150673..1152689+

>mRNA_1648 ID=mRNA_1648|Name=jgi.p|Nanoce1779_2|13274|organism=Nannochloropsis oceanica|type=CDS|length=1431bp|location=Sequence derived from alignment at scaffold_1:1150673..1152689+ (Nannochloropsis oceanica)
ATGCAGAACGACACCCGCTTCTTCGATGAGGCTTCCTACCTTTCCCAAAT
TCGAGAGGAGGCTTTGACGCAAGAATCGACAATCTTCCACACTGCACACT
GCCCACAAAATCGCTTCCTTCTCGCTTCTTCCAATCAAGGCCGTCTCGCT
ATTTGGGACTTGTCCTCCTACCTCTTCCCAAAAGGGCCCTCCTCCTCCTT
GTCCTCGCCCTCCTTCTACAGTTCTACTTCCTATCCGATTGCTTCCTCCT
CCTCTTATCCCTTAGTATTGCAAGGATTCCAGCGCCAGCTGCATCTCAAC
CAAGCGCGCCTCTACTCTGCAGAATTACGTCGGAAAGGCTACCCCTGTCT
GAGCCTGCAAGTCTCACATCATGCCATCAATCATATCCTGTTTCTTGGGC
AAGACACTGCTCAGCCTTTGTTGGTCCTTGCGGGGGACGATGGCATTTAC
TCTTGGCCATGGAAAACAATTCTGAATCTCCTGCCCCGCACGTGTGATGA
GGAGGACGGGGTCGAGGGGACAGACAATGAGCCATGCTCTTCGACAACCA
TAAACATCGGTCCTCCTTCCTCCATTCTCAAAGCCCTCCCCTCGCAAAAA
GCCTTCCCATTCCTCACGGAATCCAACCAAATCACTTCCTCCCTTCCGCC
CTCTTCCTCCTCTTCCTCAATCTTTAGTGCATGCGGTGACGCCCTTGTTC
GCAATTGGGATATCGAAACACAACAATGCACTTCTTTGCTGATAGGACAT
ACAGGTTATGTTCACGCCGTCAAGAGCTTAGGCATTGAAACGACAGCACC
AGGGGTTGTAGTCTCGGGGGGGGAAGATGGGATGGTGGGGGTGTGGGATG
TGAGGACTGGTGGTGGAGGCAGGAAGGGTAAAGGAGGGAAAGGAGGGGGT
TCATTGGTCAGGATGATGGATGGCTGGGCATCGGCGGGGGTGATCAGCAG
TAGTAACAGAAGTAGTAGCAGCAGCGACAAGGAAGGACGGAGCCAGGCTC
CGTCTTGGGTGGCCTCCTTGGATGTGGATCGAGGAGGGAATTTTTTGGTT
GCAGGAGGAGGGGTGGAAGGAGGAGATGGAGGAGGAAGAGGGGGGGGCAA
CGGGGGGGTACCGTTTGGGTACTTATCTGTTTTTCATTTGCCGAGTTTTT
CGTTGGTGAGTTGCGGAAGGAGCGATTGTGTGGTTCATGCGGTGGGTTTC
GGGCAGGAGAAGATTGTGAGTGTCGGAAATGAAAGACAGGCATTGCATTG
GTCGAGGCCGGGGTTGGAAGGGGCGGCGAGGGTCATGACGGGTATCCCCT
CAGTGTTTTCGATGACGATGAGAGAAGGGCCTGCGGTGGGAGACGGAGTG
ATGGTGTATGCGGGGAGGGCGGGCCACGTGAGTGTGTTCGTGAATCCGGA
GCATTGTGCGTTCAATCTGAAATTTCGGTAA

Synonyms

Publications