jgi.p|Nanoce1779_2|572978, mRNA_1647 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|572978
Unique NamemRNA_1647
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1306
Alignment locationscaffold_1:1149727..1151032 +

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Properties
Property NameValue
TranscriptId573064
TrackFilteredModels2
ProteinId572978
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_1supercontigscaffold_1:1149727..1151032 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|572978gene_1647Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|572978mRNA_1647-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1647CDS_1647Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1647 ID=mRNA_1647|Name=jgi.p|Nanoce1779_2|572978|organism=Nannochloropsis oceanica|type=mRNA|length=1306bp
TGGCAGCAGGGCAAATGTACTATTTCTTCCTTGGGGTAAAGAAATGACCG
CGCACCCACCTGTAATCATATTGTCATTTGTATTGAGAATGGCCTGTTGG
GAGGTGAAGGAGGAAAGCCAAGGAAGGAGACGAAAGGAGAAAGGGCATCA
GGAGAGATTGCCACCCTGCATCATGAATGCGAGCATAGTAGCGCCACCTT
TAGCTCCCTCTCCTCCCTCCCTCTCCCCCCCCCACTCCACCTGCCACCCA
TTCCCGTCCACAGCCACCCTACTTCCCGTCCACATCCACCCTATCACCCA
TCCGCCACCCTCTCATTCTGTCCAGACAGTGCGGACGGAGGCGCACAACA
AGGCCAGCAGCCTGGACACGTACCATGGAAGCGAGCATCATCTGATGCCG
CAGCTGCTGCTGCTGGCGGGAGACAGCACCCACATTGACGGCATAGGTGT
GGACACAAATAGCATCATGGTGTCCTCCAAAGATCACACGATACAATCCT
CAAAGATGAGGATAGACACCTCGATATGGATCGGCGAATCTTCCAGTTCC
AGCGTACATGTTACCATATCCAAGTTGGTGGTGGTTGCGTAGGAAGGGCT
GCAGGCGTGCAGAATCTCGTTTTTTTAGAACAAGAGAAGGACGGGACGGG
CTGCAAGGTGATGAGGTTGAGGTAAAAGGGGGGAGAAAGTCGCAGGCCAG
GCCAGTGACAGAGATAAACGTGAATAGAGGTGCGCTTCACGTTGTCGGCA
GTATAGGCGATTGGGGTACATAGCACGGCATCGGGCGAGTGGGCCCTTCA
TTTCCCGGACACTGGTCTTCCGTAAACACTGAGAAATTCGCTGTCAGAGG
CTATTGGGATGCAAGGCCAATTCCAGGTACTTCTCGCCGACCAGTTCCAC
GAGCTACGTTTCCGCGTGCGGCAGCAGAACCTCCACGCACACATCGATCT
CCTTCCCGATAGGCAGCCTTAGGCGAGGAGACGTGGCACCTCGCGACACG
ATGCGCGCGTGCTGCGATTCCCATAATTCTTTTTCTACGTTCTCTTCCAC
CCTTAAGAAACGTGGCCCACCCGCATCCTCCAAGGACCGCAGCCAGTCTG
TACCCGCTTCCCACGAATTCATCTCGTCGGGGGTGAGGGAAGACGCGTTG
ACCCACCCCCGAACGTGCATCTTGTAGATGTCAGAGACCAACCATGGCTC
CTCGTAGGACAAGGTTATCGCACCCCTGCTCTGCAAACGCGAGGTCTTGC
ATTTTGGGGAGTAGTTTGGCCGTAACCTTCATGATCCAAGGTAAGGCTGT
GTCTGT
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protein sequence of jgi.p|Nanoce1779_2|572978

>mRNA_1647-protein ID=mRNA_1647-protein|Name=jgi.p|Nanoce1779_2|572978|organism=Nannochloropsis oceanica|type=polypeptide|length=183bp
MTAHPPVIILSFVLRMACWEVKEESQGRRRKEKGHQERLPPCIMNASIVA
PPLAPSPPSLSPPHSTCHPFPSTATLLPVHIHPITHPPPSHSVQTVRTEA
HNKASSLDTYHGSEHHLMPQLLLLAGDSTHIDGIGVDTNSIMVSSKDHTI
QSSKMRIDTSIWIGESSSSSVHVTISKLVVVA*
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mRNA from alignment at scaffold_1:1149727..1151032+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1647 ID=mRNA_1647|Name=jgi.p|Nanoce1779_2|572978|organism=Nannochloropsis oceanica|type=mRNA|length=1306bp|location=Sequence derived from alignment at scaffold_1:1149727..1151032+ (Nannochloropsis oceanica)
TGGCAGCAGGGCAAATGTACTATTTCTTCCTTGGGGTAAAGAAATGACCG
CGCACCCACCTGTAATCATATTGTCATTTGTATTGAGAATGGCCTGTTGG
GAGGTGAAGGAGGAAAGCCAAGGAAGGAGACGAAAGGAGAAAGGGCATCA
GGAGAGATTGCCACCCTGCATCATGAATGCGAGCATAGTAGCGCCACCTT
TAGCTCCCTCTCCTCCCTCCCTCTCCCCCCCCCACTCCACCTGCCACCCA
TTCCCGTCCACAGCCACCCTACTTCCCGTCCACATCCACCCTATCACCCA
TCCGCCACCCTCTCATTCTGTCCAGACAGTGCGGACGGAGGCGCACAACA
AGGCCAGCAGCCTGGACACGTACCATGGAAGCGAGCATCATCTGATGCCG
CAGCTGCTGCTGCTGGCGGGAGACAGCACCCACATTGACGGCATAGGTGT
GGACACAAATAGCATCATGGTGTCCTCCAAAGATCACACGATACAATCCT
CAAAGATGAGGATAGACACCTCGATATGGATCGGCGAATCTTCCAGTTCC
AGCGTACATGTTACCATATCCAAGTTGGTGGTGGTTGCGTAGGAAGGGCT
GCAGGCGTGCAGAATCTCGTTTTTTTAGAACAAGAGAAGGACGGGACGGG
CTGCAAGGTGATGAGGTTGAGGTAAAAGGGGGGAGAAAGTCGCAGGCCAG
GCCAGTGACAGAGATAAACGTGAATAGAGGTGCGCTTCACGTTGTCGGCA
GTATAGGCGATTGGGGTACATAGCACGGCATCGGGCGAGTGGGCCCTTCA
TTTCCCGGACACTGGTCTTCCGTAAACACTGAGAAATTCGCTGTCAGAGG
CTATTGGGATGCAAGGCCAATTCCAGGTACTTCTCGCCGACCAGTTCCAC
GAGCTACGTTTCCGCGTGCGGCAGCAGAACCTCCACGCACACATCGATCT
CCTTCCCGATAGGCAGCCTTAGGCGAGGAGACGTGGCACCTCGCGACACG
ATGCGCGCGTGCTGCGATTCCCATAATTCTTTTTCTACGTTCTCTTCCAC
CCTTAAGAAACGTGGCCCACCCGCATCCTCCAAGGACCGCAGCCAGTCTG
TACCCGCTTCCCACGAATTCATCTCGTCGGGGGTGAGGGAAGACGCGTTG
ACCCACCCCCGAACGTGCATCTTGTAGATGTCAGAGACCAACCATGGCTC
CTCGTAGGACAAGGTTATCGCACCCCTGCTCTGCAAACGCGAGGTCTTGC
ATTTTGGGGAGTAGTTTGGCCGTAACCTTCATGATCCAAGGTAAGGCTGT
GTCTGT
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Coding sequence (CDS) from alignment at scaffold_1:1149727..1151032+

>mRNA_1647 ID=mRNA_1647|Name=jgi.p|Nanoce1779_2|572978|organism=Nannochloropsis oceanica|type=CDS|length=549bp|location=Sequence derived from alignment at scaffold_1:1149727..1151032+ (Nannochloropsis oceanica)
ATGACCGCGCACCCACCTGTAATCATATTGTCATTTGTATTGAGAATGGC
CTGTTGGGAGGTGAAGGAGGAAAGCCAAGGAAGGAGACGAAAGGAGAAAG
GGCATCAGGAGAGATTGCCACCCTGCATCATGAATGCGAGCATAGTAGCG
CCACCTTTAGCTCCCTCTCCTCCCTCCCTCTCCCCCCCCCACTCCACCTG
CCACCCATTCCCGTCCACAGCCACCCTACTTCCCGTCCACATCCACCCTA
TCACCCATCCGCCACCCTCTCATTCTGTCCAGACAGTGCGGACGGAGGCG
CACAACAAGGCCAGCAGCCTGGACACGTACCATGGAAGCGAGCATCATCT
GATGCCGCAGCTGCTGCTGCTGGCGGGAGACAGCACCCACATTGACGGCA
TAGGTGTGGACACAAATAGCATCATGGTGTCCTCCAAAGATCACACGATA
CAATCCTCAAAGATGAGGATAGACACCTCGATATGGATCGGCGAATCTTC
CAGTTCCAGCGTACATGTTACCATATCCAAGTTGGTGGTGGTTGCGTAG
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Synonyms
Publications