jgi.p|Nanoce1779_2|667540, mRNA_1646 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|667540
Unique Name	mRNA_1646
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1468
Alignment location	scaffold_1:1147359..1149337 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	667626
Track	FilteredModels2
ProteinId	667540

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_1	supercontig	scaffold_1:1147359..1149337 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|667540	gene_1646	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|667540	mRNA_1646-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_1646	CDS_1646	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_1:1147359..1149337+
coding sequence from alignment at scaffold_1:1147359..1149337+

mRNA sequence

>mRNA_1646 ID=mRNA_1646|Name=jgi.p|Nanoce1779_2|667540|organism=Nannochloropsis oceanica|type=mRNA|length=1468bp
ATGGACGCGCAATTGAAGCTTGGCAAAGACTTGTTGAAGCTGTTGCTATT
GGGCCTGGGGAAGGATGGTAACAAGCGCACGGACCCATCGGTGATTGAGG
ATGAGTTGCAGGAGGCCTACCGGGCCAGCACGGTAGAAGGCGTCCATCGA
GGGCTGCAGAGGGCAACCCAAAGCCTGCAAAGTCTTGGGATCTTCCACGG
CATCGACATTCAAATGCAAGAAGCCGCTAGCCAAAACCCGGGGGAAACCG
ACCTCCTTATCAAAGTAGCCGAAAAAGGCATCTTCACTGCCTACACAGGC
ACAAGCTTCACCCGCGACGACATCAATTTCGAAGCCTCCGGCTCCCTCCG
CAACCCCACCGGGTACGCCGAAAGCGTCGAAGGCACCTATTCCCGTTCTC
GCCTTGGCAATCGTTCTGTTCGTGTAAACCTTAGCAAGCCCCGCGTCCGT
GGCGCCAACGTCCGTCTCGACTGCGAACTTCACGAAGATACGCTCAACTA
CGAACGCACTTCCTCGCTGCGCGAGAAAGTTCAAGCCCTGGCATTTCATC
TCACTACACACAATCGTCGCCATCGCCTCACGTACGAAATGGCCTTGAGA
GACATCCTCCCGAGGAGGCACCTTTCTACCCCCTTTGCCTACGACGCTTC
TCTTTCCATAATGCGAGAAGCCACCCCCTCCCTCAAATCTGCGTTCAAAT
ACAAATTTATCGATGACCGGCGGAATGATGGTGTTTTACCCACAGGCGGG
ACCTTTTTTTCTGGGTTGTTGGAGCTAGCGGGACTGGGGGTGGGAGATGT
GGCGTATGTCAAAGCCGAAGTGGCGGGGGCCACTCATAAGCCTCTCGGAG
TCGGAGGGATCTGTGCGCATTTATCAGGCGTAGTGGGTGTGGTGCGGCCG
ACGAGTTGGAGGATGAGGGAGGGAGTGGGGGAGGAAGGGGTGCCAAGGAC
GAGGTTTAGTGACCGGTATGTGTTGGGGGGACTACAGACAATGAGAGGTT
TTGGGTACTCTGGGCTGGGGCCACGGGCGGCGAGGAAGGAGGGCGGATGT
TTGAAGGGAGACTCTCTTGGCGGTGATTTGAAGTATGTGGCAACGGCAGC
ATTGACGATGCCGGTACCTCTGCCGCTTCTCGATAAGTTTGGGTTGAGGT
GGCAAGTGTTCGCGGATGCCGGTAATTTGTTGCCCTGGTCCGCGCCCTTG
GCCAGCATGCTGAGTGATATGCGATTGTCGTGTGGGACGGGCTTGGCGAT
GAGCTTGGGTGCTGCAAGGGTGGAATTGAACTATTCGTTACCGTTCAAGA
GGAAGGGAAGTGACCTCGAGCAACGGTGGCAGTTCGGCTTGGCGGCGCAT
ATCGGGTAGATAGCAGAGGAGAGATGGACGAGAGATAAATAGAAAAATTG
AGGTAGAAAAGCGCACGCGCACTCATCAGCGATGCCATAAAGTAAAAATA
TGGACGGACAAAGCAGGG

protein sequence of jgi.p|Nanoce1779_2|667540

>mRNA_1646-protein ID=mRNA_1646-protein|Name=jgi.p|Nanoce1779_2|667540|organism=Nannochloropsis oceanica|type=polypeptide|length=453bp
MDAQLKLGKDLLKLLLLGLGKDGNKRTDPSVIEDELQEAYRASTVEGVHR
GLQRATQSLQSLGIFHGIDIQMQEAASQNPGETDLLIKVAEKGIFTAYTG
TSFTRDDINFEASGSLRNPTGYAESVEGTYSRSRLGNRSVRVNLSKPRVR
GANVRLDCELHEDTLNYERTSSLREKVQALAFHLTTHNRRHRLTYEMALR
DILPRRHLSTPFAYDASLSIMREATPSLKSAFKYKFIDDRRNDGVLPTGG
TFFSGLLELAGLGVGDVAYVKAEVAGATHKPLGVGGICAHLSGVVGVVRP
TSWRMREGVGEEGVPRTRFSDRYVLGGLQTMRGFGYSGLGPRAARKEGGC
LKGDSLGGDLKYVATAALTMPVPLPLLDKFGLRWQVFADAGNLLPWSAPL
ASMLSDMRLSCGTGLAMSLGAARVELNYSLPFKRKGSDLEQRWQFGLAAH
IG*

mRNA from alignment at scaffold_1:1147359..1149337+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_1646 ID=mRNA_1646|Name=jgi.p|Nanoce1779_2|667540|organism=Nannochloropsis oceanica|type=mRNA|length=1979bp|location=Sequence derived from alignment at scaffold_1:1147359..1149337+ (Nannochloropsis oceanica)
ATGGACGCGCAATTGTAAGAACAGCGTGGACAGGAGTCTGTTTGTCTAGA
GGAACTTCATACGGGTCTCTAACGACGACTGTGCAACATGTTGATTTAGC
TGGCCACTTCTGACCACATTTGCACCATACTCTTACCGCTCTCACTGCCT
TTAGGAAGCTTGGCAAAGACTTGTTGAAGCTGTTGCTATTGGGCCTGGGG
AAGGATGGTGCGCGCAGACACGCCCTTGCGCATTAACCGCGTCGTTGTTG
AAGGTCAGTTGGATGGGAGGGCTTGGAGGGGGAGGCTATAACCGCTGTAG
ACACACTTCACACATTGGCGCAGTTCACTTCCGCACCACACCACAACTAC
AGGTAACAAGCGCACGGACCCATCGGTGATTGAGGATGAGTTGCAGGAGG
CCTACCGGGCCAGCACGGTAGAAGGCGTCCATCGAGGGCTGCAGAGGTAC
GTGTTCAGATTATTTTTAAGGGTGGTTGGACGGACAGAGACGTCGCTTCG
GCTTGAGGCGCCTTCGTGCTCACTTCATCTTGCATGTAAGTCCAGAGCGA
GACACTCATCGCCTGGGCTTGAGTGTAAGCAAGAACGGATGGCAAGCAGC
CACTCTACGAGGTCATCATCTCTACCCTCCGTCATCCCCCAAACTTTCAA
ACCTCCTCACACCGCCCAACAGGGCAACCCAAAGCCTGCAAAGTCTTGGG
ATCTTCCACGGCATCGACATTCAAATGCAAGAAGCCGCTAGCCAAAACCC
GGGGGAAACCGACCTCCTTATCAAAGTAGCCGAAAAAGGCATCTTCACTG
CCTACACAGGCACAAGCTTCACCCGCGACGACATCAATTTCGAAGCCTCC
GGCTCCCTCCGCAACCCCACCGGGTACGCCGAAAGCGTCGAAGGCACCTA
TTCCCGTTCTCGCCTTGGCAATCGTTCTGTTCGTGTAAACCTTAGCAAGC
CCCGCGTCCGTGGCGCCAACGTCCGTCTCGACTGCGAACTTCACGAAGAT
ACGCTCAACTACGAACGCACTTCCTCGCTGCGCGAGAAAGTTCAAGCCCT
GGCATTTCATCTCACTACACACAATCGTCGCCATCGCCTCACGTACGAAA
TGGCCTTGAGAGACATCCTCCCGAGGAGGCACCTTTCTACCCCCTTTGCC
TACGACGCTTCTCTTTCCATAATGCGAGAAGCCACCCCCTCCCTCAAATC
TGCGTTCAAATACAAATTTATCGATGACCGGCGGAATGATGGTGTTTTAC
CCACAGGCGGGACCTTTTTTTCTGGGTTGTTGGAGCTAGCGGGACTGGGG
GTGGGAGATGTGGCGTATGTCAAAGCCGAAGTGGCGGGGGCCACTCATAA
GCCTCTCGGAGTCGGAGGGATCTGTGCGCATTTATCAGGCGTAGTGGGTG
TGGTGCGGCCGACGAGTTGGAGGATGAGGGAGGGAGTGGGGGAGGAAGGG
GTGCCAAGGACGAGGTTTAGTGACCGGTATGTGTTGGGGGGACTACAGAC
AATGAGAGGTTTTGGGTACTCTGGGCTGGGGCCACGGGCGGCGAGGAAGG
AGGGCGGATGTTTGAAGGGAGACTCTCTTGGCGGTGATTTGAAGTATGTG
GCAACGGCAGCATTGACGATGCCGGTACCTCTGCCGCTTCTCGATAAGTT
TGGGTTGAGGTGGCAAGTGTTCGCGGATGCCGGTAATTTGTTGCCCTGGT
CCGCGCCCTTGGCCAGCATGCTGAGTGATATGCGATTGTCGTGTGGGACG
GGCTTGGCGATGAGCTTGGGTGCTGCAAGGGTGGAATTGAACTATTCGTT
ACCGTTCAAGAGGAAGGGAAGTGACCTCGAGCAACGGTGGCAGTTCGGCT
TGGCGGCGCATATCGGGTAGATAGCAGAGGAGAGATGGACGAGAGATAAA
TAGAAAAATTGAGGTAGAAAAGCGCACGCGCACTCATCAGCGATGCCATA
AAGTAAAAATATGGACGGACAAAGCAGGG

Coding sequence (CDS) from alignment at scaffold_1:1147359..1149337+

>mRNA_1646 ID=mRNA_1646|Name=jgi.p|Nanoce1779_2|667540|organism=Nannochloropsis oceanica|type=CDS|length=5436bp|location=Sequence derived from alignment at scaffold_1:1147359..1149337+ (Nannochloropsis oceanica)
ATGGACGCGCAATTGAAGCTTGGCAAAGACTTGTTGAAGCTGTTGCTATT
GGGCCTGGGGAAGGATGGTAACAAGCGCACGGACCCATCGGTGATTGAGG
ATGAGTTGCAGGAGGCCTACCGGGCCAGCACGGTAGAAGGCGTCCATCGA
GGGCTGCAGAGGGCAACCCAAAGCCTGCAAAGTCTTGGGATCTTCCACGG
CATCGACATTCAAATGCAAGAAGCCGCTAGCCAAAACCCGGGGGAAACCG
ACCTCCTTATCAAAGTAGCCGAAAAAGGCATCTTCACTGCCTACACAGGC
ACAAGCTTCACCCGCGACGACATCAATTTCGAAGCCTCCGGCTCCCTCCG
CAACCCCACCGGGTACGCCGAAAGCGTCGAAGGCACCTATTCCCGTTCTC
GCCTTGGCAATCGTTCTGTTCGTGTAAACCTTAGCAAGCCCCGCGTCCGT
GGCGCCAACGTCCGTCTCGACTGCGAACTTCACGAAGATACGCTCAACTA
CGAACGCACTTCCTCGCTGCGCGAGAAAGTTCAAGCCCTGGCATTTCATC
TCACTACACACAATCGTCGCCATCGCCTCACGTACGAAATGGCCTTGAGA
GACATCCTCCCGAGGAGGCACCTTTCTACCCCCTTTGCCTACGACGCTTC
TCTTTCCATAATGCGAGAAGCCACCCCCTCCCTCAAATCTGCGTTCAAAT
ACAAATTTATCGATGACCGGCGGAATGATGGTGTTTTACCCACAGGCGGG
ACCTTTTTTTCTGGGTTGTTGGAGCTAGCGGGACTGGGGGTGGGAGATGT
GGCGTATGTCAAAGCCGAAGTGGCGGGGGCCACTCATAAGCCTCTCGGAG
TCGGAGGGATCTGTGCGCATTTATCAGGCGTAGTGGGTGTGGTGCGGCCG
ACGAGTTGGAGGATGAGGGAGGGAGTGGGGGAGGAAGGGGTGCCAAGGAC
GAGGTTTAGTGACCGGTATGTGTTGGGGGGACTACAGACAATGAGAGGTT
TTGGGTACTCTGGGCTGGGGCCACGGGCGGCGAGGAAGGAGGGCGGATGT
TTGAAGGGAGACTCTCTTGGCGGTGATTTGAAGTATGTGGCAACGGCAGC
ATTGACGATGCCGGTACCTCTGCCGCTTCTCGATAAGTTTGGGTTGAGGT
GGCAAGTGTTCGCGGATGCCGGTAATTTGTTGCCCTGGTCCGCGCCCTTG
GCCAGCATGCTGAGTGATATGCGATTGTCGTGTGGGACGGGCTTGGCGAT
GAGCTTGGGTGCTGCAAGGGTGGAATTGAACTATTCGTTACCGTTCAAGA
GGAAGGGAAGTGACCTCGAGCAACGGTGGCAGTTCGGCTTGGCGGCGCAT
ATCGGGTAGATGGACGCGCAATTGAAGCTTGGCAAAGACTTGTTGAAGCT
GTTGCTATTGGGCCTGGGGAAGGATGGTAACAAGCGCACGGACCCATCGG
TGATTGAGGATGAGTTGCAGGAGGCCTACCGGGCCAGCACGGTAGAAGGC
GTCCATCGAGGGCTGCAGAGGGCAACCCAAAGCCTGCAAAGTCTTGGGAT
CTTCCACGGCATCGACATTCAAATGCAAGAAGCCGCTAGCCAAAACCCGG
GGGAAACCGACCTCCTTATCAAAGTAGCCGAAAAAGGCATCTTCACTGCC
TACACAGGCACAAGCTTCACCCGCGACGACATCAATTTCGAAGCCTCCGG
CTCCCTCCGCAACCCCACCGGGTACGCCGAAAGCGTCGAAGGCACCTATT
CCCGTTCTCGCCTTGGCAATCGTTCTGTTCGTGTAAACCTTAGCAAGCCC
CGCGTCCGTGGCGCCAACGTCCGTCTCGACTGCGAACTTCACGAAGATAC
GCTCAACTACGAACGCACTTCCTCGCTGCGCGAGAAAGTTCAAGCCCTGG
CATTTCATCTCACTACACACAATCGTCGCCATCGCCTCACGTACGAAATG
GCCTTGAGAGACATCCTCCCGAGGAGGCACCTTTCTACCCCCTTTGCCTA
CGACGCTTCTCTTTCCATAATGCGAGAAGCCACCCCCTCCCTCAAATCTG
CGTTCAAATACAAATTTATCGATGACCGGCGGAATGATGGTGTTTTACCC
ACAGGCGGGACCTTTTTTTCTGGGTTGTTGGAGCTAGCGGGACTGGGGGT
GGGAGATGTGGCGTATGTCAAAGCCGAAGTGGCGGGGGCCACTCATAAGC
CTCTCGGAGTCGGAGGGATCTGTGCGCATTTATCAGGCGTAGTGGGTGTG
GTGCGGCCGACGAGTTGGAGGATGAGGGAGGGAGTGGGGGAGGAAGGGGT
GCCAAGGACGAGGTTTAGTGACCGGTATGTGTTGGGGGGACTACAGACAA
TGAGAGGTTTTGGGTACTCTGGGCTGGGGCCACGGGCGGCGAGGAAGGAG
GGCGGATGTTTGAAGGGAGACTCTCTTGGCGGTGATTTGAAGTATGTGGC
AACGGCAGCATTGACGATGCCGGTACCTCTGCCGCTTCTCGATAAGTTTG
GGTTGAGGTGGCAAGTGTTCGCGGATGCCGGTAATTTGTTGCCCTGGTCC
GCGCCCTTGGCCAGCATGCTGAGTGATATGCGATTGTCGTGTGGGACGGG
CTTGGCGATGAGCTTGGGTGCTGCAAGGGTGGAATTGAACTATTCGTTAC
CGTTCAAGAGGAAGGGAAGTGACCTCGAGCAACGGTGGCAGTTCGGCTTG
GCGGCGCATATCGGGTAGATGGACGCGCAATTGAAGCTTGGCAAAGACTT
GTTGAAGCTGTTGCTATTGGGCCTGGGGAAGGATGGTAACAAGCGCACGG
ACCCATCGGTGATTGAGGATGAGTTGCAGGAGGCCTACCGGGCCAGCACG
GTAGAAGGCGTCCATCGAGGGCTGCAGAGGGCAACCCAAAGCCTGCAAAG
TCTTGGGATCTTCCACGGCATCGACATTCAAATGCAAGAAGCCGCTAGCC
AAAACCCGGGGGAAACCGACCTCCTTATCAAAGTAGCCGAAAAAGGCATC
TTCACTGCCTACACAGGCACAAGCTTCACCCGCGACGACATCAATTTCGA
AGCCTCCGGCTCCCTCCGCAACCCCACCGGGTACGCCGAAAGCGTCGAAG
GCACCTATTCCCGTTCTCGCCTTGGCAATCGTTCTGTTCGTGTAAACCTT
AGCAAGCCCCGCGTCCGTGGCGCCAACGTCCGTCTCGACTGCGAACTTCA
CGAAGATACGCTCAACTACGAACGCACTTCCTCGCTGCGCGAGAAAGTTC
AAGCCCTGGCATTTCATCTCACTACACACAATCGTCGCCATCGCCTCACG
TACGAAATGGCCTTGAGAGACATCCTCCCGAGGAGGCACCTTTCTACCCC
CTTTGCCTACGACGCTTCTCTTTCCATAATGCGAGAAGCCACCCCCTCCC
TCAAATCTGCGTTCAAATACAAATTTATCGATGACCGGCGGAATGATGGT
GTTTTACCCACAGGCGGGACCTTTTTTTCTGGGTTGTTGGAGCTAGCGGG
ACTGGGGGTGGGAGATGTGGCGTATGTCAAAGCCGAAGTGGCGGGGGCCA
CTCATAAGCCTCTCGGAGTCGGAGGGATCTGTGCGCATTTATCAGGCGTA
GTGGGTGTGGTGCGGCCGACGAGTTGGAGGATGAGGGAGGGAGTGGGGGA
GGAAGGGGTGCCAAGGACGAGGTTTAGTGACCGGTATGTGTTGGGGGGAC
TACAGACAATGAGAGGTTTTGGGTACTCTGGGCTGGGGCCACGGGCGGCG
AGGAAGGAGGGCGGATGTTTGAAGGGAGACTCTCTTGGCGGTGATTTGAA
GTATGTGGCAACGGCAGCATTGACGATGCCGGTACCTCTGCCGCTTCTCG
ATAAGTTTGGGTTGAGGTGGCAAGTGTTCGCGGATGCCGGTAATTTGTTG
CCCTGGTCCGCGCCCTTGGCCAGCATGCTGAGTGATATGCGATTGTCGTG
TGGGACGGGCTTGGCGATGAGCTTGGGTGCTGCAAGGGTGGAATTGAACT
ATTCGTTACCGTTCAAGAGGAAGGGAAGTGACCTCGAGCAACGGTGGCAG
TTCGGCTTGGCGGCGCATATCGGGTAGATGGACGCGCAATTGAAGCTTGG
CAAAGACTTGTTGAAGCTGTTGCTATTGGGCCTGGGGAAGGATGGTAACA
AGCGCACGGACCCATCGGTGATTGAGGATGAGTTGCAGGAGGCCTACCGG
GCCAGCACGGTAGAAGGCGTCCATCGAGGGCTGCAGAGGGCAACCCAAAG
CCTGCAAAGTCTTGGGATCTTCCACGGCATCGACATTCAAATGCAAGAAG
CCGCTAGCCAAAACCCGGGGGAAACCGACCTCCTTATCAAAGTAGCCGAA
AAAGGCATCTTCACTGCCTACACAGGCACAAGCTTCACCCGCGACGACAT
CAATTTCGAAGCCTCCGGCTCCCTCCGCAACCCCACCGGGTACGCCGAAA
GCGTCGAAGGCACCTATTCCCGTTCTCGCCTTGGCAATCGTTCTGTTCGT
GTAAACCTTAGCAAGCCCCGCGTCCGTGGCGCCAACGTCCGTCTCGACTG
CGAACTTCACGAAGATACGCTCAACTACGAACGCACTTCCTCGCTGCGCG
AGAAAGTTCAAGCCCTGGCATTTCATCTCACTACACACAATCGTCGCCAT
CGCCTCACGTACGAAATGGCCTTGAGAGACATCCTCCCGAGGAGGCACCT
TTCTACCCCCTTTGCCTACGACGCTTCTCTTTCCATAATGCGAGAAGCCA
CCCCCTCCCTCAAATCTGCGTTCAAATACAAATTTATCGATGACCGGCGG
AATGATGGTGTTTTACCCACAGGCGGGACCTTTTTTTCTGGGTTGTTGGA
GCTAGCGGGACTGGGGGTGGGAGATGTGGCGTATGTCAAAGCCGAAGTGG
CGGGGGCCACTCATAAGCCTCTCGGAGTCGGAGGGATCTGTGCGCATTTA
TCAGGCGTAGTGGGTGTGGTGCGGCCGACGAGTTGGAGGATGAGGGAGGG
AGTGGGGGAGGAAGGGGTGCCAAGGACGAGGTTTAGTGACCGGTATGTGT
TGGGGGGACTACAGACAATGAGAGGTTTTGGGTACTCTGGGCTGGGGCCA
CGGGCGGCGAGGAAGGAGGGCGGATGTTTGAAGGGAGACTCTCTTGGCGG
TGATTTGAAGTATGTGGCAACGGCAGCATTGACGATGCCGGTACCTCTGC
CGCTTCTCGATAAGTTTGGGTTGAGGTGGCAAGTGTTCGCGGATGCCGGT
AATTTGTTGCCCTGGTCCGCGCCCTTGGCCAGCATGCTGAGTGATATGCG
ATTGTCGTGTGGGACGGGCTTGGCGATGAGCTTGGGTGCTGCAAGGGTGG
AATTGAACTATTCGTTACCGTTCAAGAGGAAGGGAAGTGACCTCGAGCAA
CGGTGGCAGTTCGGCTTGGCGGCGCATATCGGGTAG

Synonyms

Publications