jgi.p|Nanoce1779_2|572966, mRNA_1645 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|572966
Unique NamemRNA_1645
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length2205
Alignment locationscaffold_1:1145015..1147219 -

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Properties
Property NameValue
TranscriptId573052
TrackFilteredModels2
ProteinId572966
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_1supercontigscaffold_1:1145015..1147219 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|572966gene_1645Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|572966mRNA_1645-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1645CDS_1645Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1645 ID=mRNA_1645|Name=jgi.p|Nanoce1779_2|572966|organism=Nannochloropsis oceanica|type=mRNA|length=2205bp
CAGCCGGACTCCGCATCAAGCCCACCATGTACCCCCAGCTTAGCCCACAT
GCCCAAGCTATCTACAAGAAGCTGACGGCCTTTGTGGACGAGGAATGCAT
GCCGGCCGAGAAAGTGTTTGAGGAGCAGCATGCAGCATTGTCTTCCCGGT
GGATGGTCCCCGCGGTCGTCGAGACCCTCAAGGCCAAAGCCAAGAGGTTA
GGCCTATGGAACCTCTTTATGATGGAAGAGCACGTGCATCACTCCGGGCT
GAAAATGACGGAGTACGCTGTTATGAGTGAGGTCATGGGTCGGTCCTTTC
TGGCGCCCGAGGCATGTAATTGCAATGCGCCAGACACGGGTAACATGGAA
GTGTTGGCAAAGTATGGCAACGCCGCGCAACAAGCACGGTGGCTCACTCC
CTTAATGGCAGGCACCATCCGCTCTACCTTTCTCATGACTGAACCCGCCG
TCGCCTCGTCGGATGCGACCAATATTTGCACGAACTTCTGTAGGGAAGGC
GATGAGTATGTGGTGAATGGCCGCAAGTGGTGGAGCTCCGGCGCCATGGA
CCCCCGTTGCCAAGTCGCGCTTGTGATGGGCAAGGTAGAAGGCGCCGCCA
CCAACGCTGCCCGTCGGCATCAGCAGCATTCCATCTTGATTGTACCCATG
GACACACCCGGGCTCAAGGTCTTGCGCCCTCTGACCGTTTTTGGGTTCGA
CGATGCCCCCCACGGTCACGCCGAGGTGGAACTTGTGAATGTGCGTGTGC
CCGTCAGCAACCTGGTCCTGGGAGAAGGGGACGGCTTCAAAATTGCACAA
GGCCGCTTAGGCCCGGGGCGGATCCACCATTGTATGCGAGCAATTGGGCT
GTCGGAGCGCGTGTTGGCGTTGGCGATTAAGCGAGCCATGACGCGCAAGG
CTTTTGGACAGGAGCTCGCGCGACAAGGCACCGTGCAACGGGACTTGGCG
CAGTGCCGGATGGAGTTAGACCAGGCACGATTGTTGGTGTTGCACGCTGC
CTGGCGGATGGATACGAATGGCGGGGCCAAAGGTGCACAACAGGAGATTG
CGATGATCAAGGTTGTAGCGCCGAATATGGGCCAACGGGTGGTGGACACT
GCCATTCAGATTCATGGTGGTATGGGCGTGTGTCAAGACACTATTCTGGC
ACGGGCATTTGCGTACATGCGCTCACTGCGTATTGCAGACGGGCCCGATG
TGGTGCATTCACGAACGGTGGCGCGCCATGAGTTGAAGCGGATGATTGAT
GGCAAGACACAGCTATCTGCGGACGCGTGGTATAGGAGCACCCATGGCGT
CACAAGTGTGAACAGCAGGCTTTGATTAGGTTGAAACAAGAACACGAACA
AAATCACGTAAATTTTTGTTCAATTATTAAGGTAGCTTCTGTACATTCAA
AATTTTGATATATTTCTTATGCTTTGTACCCTATCCCTAATAATTCATAG
CTATTTTGACAACAATCTAGCCTTGACAATATGCTTCCAAACACGAAGTA
CACTGGGATGTGGTCGCCCAAAAGCCCATTCTGTCCTGCTCCGACAAGCT
AGCGGCAAACAAACATGCCAAACACTTTCTGAAATCAGAAGCTTTAAGCT
GGTCTTGTCCGTTCCTGACAATATCGTCGACGTCTGCAGCTTGCAGAGGG
TCTGCGGGGATGCCAAAGATCTGGTTTAGCCCTAAGGCACTCCGAAGTGC
CGTAAAACCACTCTTGCCACTGGAAACCACCCGGTTGGGTACATAAACAA
TGGCAGTAACGTTGGGCTCACGGCACCCGAAAAAACTGACTTGCGTTGTG
TGCCGTGGATTCGTAAACCCCGGTTTGGGGATATCCGCTGGCAAGGTATG
CTCCTCACTGAGCTCCGAGAGGCGGAACAAGTCGTTTAGCACTGGATCGG
CTGTAGGCCAGCACGCATTGTCCAGCAAAGGCTCACATGTTGAACAGCAT
TTGTTGTTCAGGCCGCCGTCAGCTTCGTAATATAAATTTGAGGCGCAAGA
GGCCGACGCGCCCGGCGCCGAATCGGTGGCGCACGAGGCCTCCGGTCCCG
TCGAAATGGGAGCATCGAAGGTCTTCCCACCTTTACTCCCACTCGAATCG
ATGACGATCACAACGTCCGCCTGTCGCGTAGGAGTTACAAAGGGCCAGAC
CGGGTTGTTGTACGTAGCGGCGCCGTCCAGGACCTTTGTTTCGGCACTTG
TAAAC
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protein sequence of jgi.p|Nanoce1779_2|572966

>mRNA_1645-protein ID=mRNA_1645-protein|Name=jgi.p|Nanoce1779_2|572966|organism=Nannochloropsis oceanica|type=polypeptide|length=433bp
MYPQLSPHAQAIYKKLTAFVDEECMPAEKVFEEQHAALSSRWMVPAVVET
LKAKAKRLGLWNLFMMEEHVHHSGLKMTEYAVMSEVMGRSFLAPEACNCN
APDTGNMEVLAKYGNAAQQARWLTPLMAGTIRSTFLMTEPAVASSDATNI
CTNFCREGDEYVVNGRKWWSSGAMDPRCQVALVMGKVEGAATNAARRHQQ
HSILIVPMDTPGLKVLRPLTVFGFDDAPHGHAEVELVNVRVPVSNLVLGE
GDGFKIAQGRLGPGRIHHCMRAIGLSERVLALAIKRAMTRKAFGQELARQ
GTVQRDLAQCRMELDQARLLVLHAAWRMDTNGGAKGAQQEIAMIKVVAPN
MGQRVVDTAIQIHGGMGVCQDTILARAFAYMRSLRIADGPDVVHSRTVAR
HELKRMIDGKTQLSADAWYRSTHGVTSVNSRL*
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mRNA from alignment at scaffold_1:1145015..1147219-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1645 ID=mRNA_1645|Name=jgi.p|Nanoce1779_2|572966|organism=Nannochloropsis oceanica|type=mRNA|length=2205bp|location=Sequence derived from alignment at scaffold_1:1145015..1147219- (Nannochloropsis oceanica)
CAGCCGGACTCCGCATCAAGCCCACCATGTACCCCCAGCTTAGCCCACAT
GCCCAAGCTATCTACAAGAAGCTGACGGCCTTTGTGGACGAGGAATGCAT
GCCGGCCGAGAAAGTGTTTGAGGAGCAGCATGCAGCATTGTCTTCCCGGT
GGATGGTCCCCGCGGTCGTCGAGACCCTCAAGGCCAAAGCCAAGAGGTTA
GGCCTATGGAACCTCTTTATGATGGAAGAGCACGTGCATCACTCCGGGCT
GAAAATGACGGAGTACGCTGTTATGAGTGAGGTCATGGGTCGGTCCTTTC
TGGCGCCCGAGGCATGTAATTGCAATGCGCCAGACACGGGTAACATGGAA
GTGTTGGCAAAGTATGGCAACGCCGCGCAACAAGCACGGTGGCTCACTCC
CTTAATGGCAGGCACCATCCGCTCTACCTTTCTCATGACTGAACCCGCCG
TCGCCTCGTCGGATGCGACCAATATTTGCACGAACTTCTGTAGGGAAGGC
GATGAGTATGTGGTGAATGGCCGCAAGTGGTGGAGCTCCGGCGCCATGGA
CCCCCGTTGCCAAGTCGCGCTTGTGATGGGCAAGGTAGAAGGCGCCGCCA
CCAACGCTGCCCGTCGGCATCAGCAGCATTCCATCTTGATTGTACCCATG
GACACACCCGGGCTCAAGGTCTTGCGCCCTCTGACCGTTTTTGGGTTCGA
CGATGCCCCCCACGGTCACGCCGAGGTGGAACTTGTGAATGTGCGTGTGC
CCGTCAGCAACCTGGTCCTGGGAGAAGGGGACGGCTTCAAAATTGCACAA
GGCCGCTTAGGCCCGGGGCGGATCCACCATTGTATGCGAGCAATTGGGCT
GTCGGAGCGCGTGTTGGCGTTGGCGATTAAGCGAGCCATGACGCGCAAGG
CTTTTGGACAGGAGCTCGCGCGACAAGGCACCGTGCAACGGGACTTGGCG
CAGTGCCGGATGGAGTTAGACCAGGCACGATTGTTGGTGTTGCACGCTGC
CTGGCGGATGGATACGAATGGCGGGGCCAAAGGTGCACAACAGGAGATTG
CGATGATCAAGGTTGTAGCGCCGAATATGGGCCAACGGGTGGTGGACACT
GCCATTCAGATTCATGGTGGTATGGGCGTGTGTCAAGACACTATTCTGGC
ACGGGCATTTGCGTACATGCGCTCACTGCGTATTGCAGACGGGCCCGATG
TGGTGCATTCACGAACGGTGGCGCGCCATGAGTTGAAGCGGATGATTGAT
GGCAAGACACAGCTATCTGCGGACGCGTGGTATAGGAGCACCCATGGCGT
CACAAGTGTGAACAGCAGGCTTTGATTAGGTTGAAACAAGAACACGAACA
AAATCACGTAAATTTTTGTTCAATTATTAAGGTAGCTTCTGTACATTCAA
AATTTTGATATATTTCTTATGCTTTGTACCCTATCCCTAATAATTCATAG
CTATTTTGACAACAATCTAGCCTTGACAATATGCTTCCAAACACGAAGTA
CACTGGGATGTGGTCGCCCAAAAGCCCATTCTGTCCTGCTCCGACAAGCT
AGCGGCAAACAAACATGCCAAACACTTTCTGAAATCAGAAGCTTTAAGCT
GGTCTTGTCCGTTCCTGACAATATCGTCGACGTCTGCAGCTTGCAGAGGG
TCTGCGGGGATGCCAAAGATCTGGTTTAGCCCTAAGGCACTCCGAAGTGC
CGTAAAACCACTCTTGCCACTGGAAACCACCCGGTTGGGTACATAAACAA
TGGCAGTAACGTTGGGCTCACGGCACCCGAAAAAACTGACTTGCGTTGTG
TGCCGTGGATTCGTAAACCCCGGTTTGGGGATATCCGCTGGCAAGGTATG
CTCCTCACTGAGCTCCGAGAGGCGGAACAAGTCGTTTAGCACTGGATCGG
CTGTAGGCCAGCACGCATTGTCCAGCAAAGGCTCACATGTTGAACAGCAT
TTGTTGTTCAGGCCGCCGTCAGCTTCGTAATATAAATTTGAGGCGCAAGA
GGCCGACGCGCCCGGCGCCGAATCGGTGGCGCACGAGGCCTCCGGTCCCG
TCGAAATGGGAGCATCGAAGGTCTTCCCACCTTTACTCCCACTCGAATCG
ATGACGATCACAACGTCCGCCTGTCGCGTAGGAGTTACAAAGGGCCAGAC
CGGGTTGTTGTACGTAGCGGCGCCGTCCAGGACCTTTGTTTCGGCACTTG
TAAAC
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Coding sequence (CDS) from alignment at scaffold_1:1145015..1147219-

>mRNA_1645 ID=mRNA_1645|Name=jgi.p|Nanoce1779_2|572966|organism=Nannochloropsis oceanica|type=CDS|length=1299bp|location=Sequence derived from alignment at scaffold_1:1145015..1147219- (Nannochloropsis oceanica)
ATGTACCCCCAGCTTAGCCCACATGCCCAAGCTATCTACAAGAAGCTGAC
GGCCTTTGTGGACGAGGAATGCATGCCGGCCGAGAAAGTGTTTGAGGAGC
AGCATGCAGCATTGTCTTCCCGGTGGATGGTCCCCGCGGTCGTCGAGACC
CTCAAGGCCAAAGCCAAGAGGTTAGGCCTATGGAACCTCTTTATGATGGA
AGAGCACGTGCATCACTCCGGGCTGAAAATGACGGAGTACGCTGTTATGA
GTGAGGTCATGGGTCGGTCCTTTCTGGCGCCCGAGGCATGTAATTGCAAT
GCGCCAGACACGGGTAACATGGAAGTGTTGGCAAAGTATGGCAACGCCGC
GCAACAAGCACGGTGGCTCACTCCCTTAATGGCAGGCACCATCCGCTCTA
CCTTTCTCATGACTGAACCCGCCGTCGCCTCGTCGGATGCGACCAATATT
TGCACGAACTTCTGTAGGGAAGGCGATGAGTATGTGGTGAATGGCCGCAA
GTGGTGGAGCTCCGGCGCCATGGACCCCCGTTGCCAAGTCGCGCTTGTGA
TGGGCAAGGTAGAAGGCGCCGCCACCAACGCTGCCCGTCGGCATCAGCAG
CATTCCATCTTGATTGTACCCATGGACACACCCGGGCTCAAGGTCTTGCG
CCCTCTGACCGTTTTTGGGTTCGACGATGCCCCCCACGGTCACGCCGAGG
TGGAACTTGTGAATGTGCGTGTGCCCGTCAGCAACCTGGTCCTGGGAGAA
GGGGACGGCTTCAAAATTGCACAAGGCCGCTTAGGCCCGGGGCGGATCCA
CCATTGTATGCGAGCAATTGGGCTGTCGGAGCGCGTGTTGGCGTTGGCGA
TTAAGCGAGCCATGACGCGCAAGGCTTTTGGACAGGAGCTCGCGCGACAA
GGCACCGTGCAACGGGACTTGGCGCAGTGCCGGATGGAGTTAGACCAGGC
ACGATTGTTGGTGTTGCACGCTGCCTGGCGGATGGATACGAATGGCGGGG
CCAAAGGTGCACAACAGGAGATTGCGATGATCAAGGTTGTAGCGCCGAAT
ATGGGCCAACGGGTGGTGGACACTGCCATTCAGATTCATGGTGGTATGGG
CGTGTGTCAAGACACTATTCTGGCACGGGCATTTGCGTACATGCGCTCAC
TGCGTATTGCAGACGGGCCCGATGTGGTGCATTCACGAACGGTGGCGCGC
CATGAGTTGAAGCGGATGATTGATGGCAAGACACAGCTATCTGCGGACGC
GTGGTATAGGAGCACCCATGGCGTCACAAGTGTGAACAGCAGGCTTTGA
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Synonyms
Publications