jgi.p|Nanoce1779_2|626953, mRNA_1642 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|626953
Unique Name	mRNA_1642
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	3153
Alignment location	scaffold_1:1139165..1142317 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	627039
Track	FilteredModels2
ProteinId	626953

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_1	supercontig	scaffold_1:1139165..1142317 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|626953	gene_1642	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|626953	mRNA_1642-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_1642	CDS_1642	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_1:1139165..1142317-
coding sequence from alignment at scaffold_1:1139165..1142317-

mRNA sequence

>mRNA_1642 ID=mRNA_1642|Name=jgi.p|Nanoce1779_2|626953|organism=Nannochloropsis oceanica|type=mRNA|length=3153bp
TTTTGCGCGAAGGATTTTACGAAGAAAAATGGGCGAAAGCTAACCTCCCT
TTTTCGTTGCCTAACTTAACTGACTTTGAATGCACTAAAACACCACAATA
TCACCTCAATTATCTTAGCAGATGAGTCATGGCAGGGGATCATAATTCCA
GCTAACTGGTGGCACTACCGGCGGTCCACCGCACGGCGCTAAAAAGTCGT
CGGGGGAAAGCCGCGAACGCATGATGCCTGCAACCCTCACAACACTGCCG
CTATTGCAGGCACAAGGAACAGGAGAAAAGCAAGCCCATGCAAATGAAGC
GAAGGCAGCAACCCGTCGTGCCCGGCTTCGCGCAACCAGATTGGCCGAAA
TCAAGGGTTTGCTTAGTAATTTCAGTAAGCGCATGCGCCGTGAACGTGAC
ATGGACGCCTTGCAGGCGGCCGTCCGCAGGCGGGACGTGGAGACGGTTGA
GATGTGGTTCGATAATGATTATGAGGTAACGAAGCATGGGTTGATTGTGG
GGGTGCTAACGGGGGATTTGAGGATGGTCAAATTAATGGTAGATAAGGGG
GGAGGAACGCAGTATGCGCTGGCGAGGCTGCCGAGGGATATGGGTGAGGA
TTTACCGAGGCGGGTTAGTGAGCAGCATAGAGGGTCGGGGTTGATGCATT
CGGCGGTATTGCAGAAGTCGCCGGAAATGATCAATTTGCTGCATTCATAC
ATGAAGGCGGAGTGTAGTAGGCAGTTTGGATAGAGGCATGTATGGCATGC
GGGGGCGATTAAGGACCATAAAGGGTTCACGCCATTGCACTTGGCTATGT
CGTTAAGTAAATTACAGTGTACCGAGAGTTTGATTAAGGCGGAGCATCGA
CTGGAAGATTTGGATCAAGGAGGGCATACACCGTTGGTGTAGTTGCAGAG
AGATGGCTTGGGGTGCTTGGAGATGGTGCTGAAGGCAGGGGCGGATTTGA
ATGCGGCGGATTGGAAGGGAAGAACGGTTTTGTTTTGGTTTCAGAATAGT
CACGCGAATGAAAAGGCATATGGGAGGTGTGAGTATAATAGGACGATGTG
CAAGCTGGAGAAGGGAGCGAATCATGGGCCGGCGATGAAGCAGGAGCTGA
AGATTGATTTGTCGATTGGCGTGGAGGGTGACTTACCTCAGAACAAAATT
CCAGTGATTATTTCAGATAGAGGGGGAAAGGAAAGGTGTGGGGCGGAGGA
GCTCAGTGATAAAGAGGGATCGGCTGCGAAGGAAAGTGGGAAGGACAAGA
GGAGGCGGCGGCGAGCCGTCACAGTGAAGAGGAAGAAATGGCGGAGGGAT
TACACTCTCTGGAAGTGGTGGACATTGTGCGACTCACCGACGGCCACCGC
CGCTCCTCAAGTCCTGCTACGACAGTGTCTGCGCCCTCCGCTGGTGCCCC
TTCTCTCCCTGGTGACGCTGCTAGTGCCGCTGCTACCGTGGACGAGGACG
CGTATGATAGCCCTCCAAAAGGGATTCCCTTCTATCCTGTCTTTGCCTAC
ATCAAGGAATGTGATGGTAATGTTCCCGTCACTGGCTGCAAGGGCTGCCA
ATGCCGCGGTGCGTGTGTGATGAACCCGCATTGTGAATGTCAGATGCGAA
TCCCTTGTAATCTTCCATATTCTACGCCTGAGGGGCTTTTAACAAATATG
ACGGGCGTGAATTTTATGGAATTAGGACCGAACAGTGTAATGAGGGTTGT
GGGCTACGGGTCTTCCAGCTCTCGGTCGCTATTGATTGTGAAGTCCGATG
GACAGGAAAACGGCGGGGTTGGGGTGTTTTCACGATGGAGGCGTTGAAAA
AGGGTCAGTATGCAATGACGTACGTGGGAGAGATGACGAATGATGTGCAA
GCTAATGCCAGGTTTCAGCAGATGACTGATAAAGGTGGGAATCCTTCATA
TCAGACAGAGATGCAGCTTACAAATAATCCGATCGTTGTAATCGACGCGA
CCTATGGAGGCAATGTATCGCGGGTGGTAAATCATTCGTGTGATCCTTAT
TTGTTTCTGAGAAAGGTTTACAACCGCGGAACGCTCTACCCCAATGCCTG
ATTTTTCACCATACGCGGGATTCGAGTTGAATGTCAATTATAATCCGCAT
AAGAAGAAGAAAAAGGGGGGTTCGAGGTCGAGGGATCATTCGCTGGAGGA
AATGCGGTGCTATTGTGGGGCCAGAAAACGCCAGGACGTGATATAGCTTT
AGAGAGTCGACTGTGGTGGCTCTGACTTGGTTGGACGTATTGGTTGATAA
GTATAATAGTAGTGATGCGAGAGAGGAGAAAAGGAAAGAGGTCGGGAAAG
GTGGTATGCGCAGTCATGCGCGGTTTGCAGTCGAGAAAGTTGCAAGTCTC
ACGATGACTGAGGGATCGGCAAGGGAGAGAAGAAAATTATGAGACTGGTA
AGGATGACATTCCTGGGGACTGAAATGAGTGTAAATGATAGAGTGTATGT
GTACATATTATAAACCAAGAAGAGGAAGGGAAGAAAAAGAGAGTTGACAC
TGCATTGGCGCGAGGAACAGGTCAGAGAGAAATAGAAGTAGAGAAGTACG
ATTAATTGTATAGAGAGCACGGGAAGCTGTTTTACTAGATACGTTTCCTA
CGTTCAGGATGACGTGGTGACATTTGTCCTGGCTTCATAAAAGGAGAAAA
AAAGGATGTAAATGGGTTTGGTTTGATTTCTTTTGAGAGGTGGGAGGTGG
AGTTGGCCGAATGGGCTTTTTGAGGTCAGGGAATTCCAATCAAGAAGTAT
GTCATCGGGAAAATCTTCAGTAGCTGTAGGATGCACGGAAGGAAATTTGG
ATTTCCTGACGTGGGTGTGTGATATTTTGAGCCTCTTGTTGTGTGGGATT
CGAAAGTTGCCCTCGAAGTGGTGGAGGGCTTGCCTTGAACAGATGGTGGA
GACAAGAACTCGAGCGAGCCCCCGCACTTTGATTCTATCTTCACCTTTTA
CTCTTCCCCTTACTCTCCTTCGTTTACCACCCATGCACCAATCACCTACT
CCCCTTCAATAAAATTTGATAAAATAGAGTGTGTTCGCCATCAAACCCCT
CAAAAAGCTTTTTGAGGGGATTGCTTTTTGAGGGGTTTGTCGATGTGTGT
TCGATGCTTTTTGAGGGGTTTGAGATGGGACCCTTCAAAAAGAGCTACCA
ATG

protein sequence of jgi.p|Nanoce1779_2|626953

>mRNA_1642-protein ID=mRNA_1642-protein|Name=jgi.p|Nanoce1779_2|626953|organism=Nannochloropsis oceanica|type=polypeptide|length=216bp
MVLKAGADLNAADWKGRTVLFWFQNSHANEKAYGRCEYNRTMCKLEKGAN
HGPAMKQELKIDLSIGVEGDLPQNKIPVIISDRGGKERCGAEELSDKEGS
AAKESGKDKRRRRRAVTVKRKKWRRDYTLWKWWTLCDSPTATAAPQVLLR
QCLRPPLVPLLSLVTLLVPLLPWTRTRMIALQKGFPSILSLPTSRNVMVM
FPSLAARAANAAVRV*

mRNA from alignment at scaffold_1:1139165..1142317-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_1642 ID=mRNA_1642|Name=jgi.p|Nanoce1779_2|626953|organism=Nannochloropsis oceanica|type=mRNA|length=3153bp|location=Sequence derived from alignment at scaffold_1:1139165..1142317- (Nannochloropsis oceanica)
TTTTGCGCGAAGGATTTTACGAAGAAAAATGGGCGAAAGCTAACCTCCCT
TTTTCGTTGCCTAACTTAACTGACTTTGAATGCACTAAAACACCACAATA
TCACCTCAATTATCTTAGCAGATGAGTCATGGCAGGGGATCATAATTCCA
GCTAACTGGTGGCACTACCGGCGGTCCACCGCACGGCGCTAAAAAGTCGT
CGGGGGAAAGCCGCGAACGCATGATGCCTGCAACCCTCACAACACTGCCG
CTATTGCAGGCACAAGGAACAGGAGAAAAGCAAGCCCATGCAAATGAAGC
GAAGGCAGCAACCCGTCGTGCCCGGCTTCGCGCAACCAGATTGGCCGAAA
TCAAGGGTTTGCTTAGTAATTTCAGTAAGCGCATGCGCCGTGAACGTGAC
ATGGACGCCTTGCAGGCGGCCGTCCGCAGGCGGGACGTGGAGACGGTTGA
GATGTGGTTCGATAATGATTATGAGGTAACGAAGCATGGGTTGATTGTGG
GGGTGCTAACGGGGGATTTGAGGATGGTCAAATTAATGGTAGATAAGGGG
GGAGGAACGCAGTATGCGCTGGCGAGGCTGCCGAGGGATATGGGTGAGGA
TTTACCGAGGCGGGTTAGTGAGCAGCATAGAGGGTCGGGGTTGATGCATT
CGGCGGTATTGCAGAAGTCGCCGGAAATGATCAATTTGCTGCATTCATAC
ATGAAGGCGGAGTGTAGTAGGCAGTTTGGATAGAGGCATGTATGGCATGC
GGGGGCGATTAAGGACCATAAAGGGTTCACGCCATTGCACTTGGCTATGT
CGTTAAGTAAATTACAGTGTACCGAGAGTTTGATTAAGGCGGAGCATCGA
CTGGAAGATTTGGATCAAGGAGGGCATACACCGTTGGTGTAGTTGCAGAG
AGATGGCTTGGGGTGCTTGGAGATGGTGCTGAAGGCAGGGGCGGATTTGA
ATGCGGCGGATTGGAAGGGAAGAACGGTTTTGTTTTGGTTTCAGAATAGT
CACGCGAATGAAAAGGCATATGGGAGGTGTGAGTATAATAGGACGATGTG
CAAGCTGGAGAAGGGAGCGAATCATGGGCCGGCGATGAAGCAGGAGCTGA
AGATTGATTTGTCGATTGGCGTGGAGGGTGACTTACCTCAGAACAAAATT
CCAGTGATTATTTCAGATAGAGGGGGAAAGGAAAGGTGTGGGGCGGAGGA
GCTCAGTGATAAAGAGGGATCGGCTGCGAAGGAAAGTGGGAAGGACAAGA
GGAGGCGGCGGCGAGCCGTCACAGTGAAGAGGAAGAAATGGCGGAGGGAT
TACACTCTCTGGAAGTGGTGGACATTGTGCGACTCACCGACGGCCACCGC
CGCTCCTCAAGTCCTGCTACGACAGTGTCTGCGCCCTCCGCTGGTGCCCC
TTCTCTCCCTGGTGACGCTGCTAGTGCCGCTGCTACCGTGGACGAGGACG
CGTATGATAGCCCTCCAAAAGGGATTCCCTTCTATCCTGTCTTTGCCTAC
ATCAAGGAATGTGATGGTAATGTTCCCGTCACTGGCTGCAAGGGCTGCCA
ATGCCGCGGTGCGTGTGTGATGAACCCGCATTGTGAATGTCAGATGCGAA
TCCCTTGTAATCTTCCATATTCTACGCCTGAGGGGCTTTTAACAAATATG
ACGGGCGTGAATTTTATGGAATTAGGACCGAACAGTGTAATGAGGGTTGT
GGGCTACGGGTCTTCCAGCTCTCGGTCGCTATTGATTGTGAAGTCCGATG
GACAGGAAAACGGCGGGGTTGGGGTGTTTTCACGATGGAGGCGTTGAAAA
AGGGTCAGTATGCAATGACGTACGTGGGAGAGATGACGAATGATGTGCAA
GCTAATGCCAGGTTTCAGCAGATGACTGATAAAGGTGGGAATCCTTCATA
TCAGACAGAGATGCAGCTTACAAATAATCCGATCGTTGTAATCGACGCGA
CCTATGGAGGCAATGTATCGCGGGTGGTAAATCATTCGTGTGATCCTTAT
TTGTTTCTGAGAAAGGTTTACAACCGCGGAACGCTCTACCCCAATGCCTG
ATTTTTCACCATACGCGGGATTCGAGTTGAATGTCAATTATAATCCGCAT
AAGAAGAAGAAAAAGGGGGGTTCGAGGTCGAGGGATCATTCGCTGGAGGA
AATGCGGTGCTATTGTGGGGCCAGAAAACGCCAGGACGTGATATAGCTTT
AGAGAGTCGACTGTGGTGGCTCTGACTTGGTTGGACGTATTGGTTGATAA
GTATAATAGTAGTGATGCGAGAGAGGAGAAAAGGAAAGAGGTCGGGAAAG
GTGGTATGCGCAGTCATGCGCGGTTTGCAGTCGAGAAAGTTGCAAGTCTC
ACGATGACTGAGGGATCGGCAAGGGAGAGAAGAAAATTATGAGACTGGTA
AGGATGACATTCCTGGGGACTGAAATGAGTGTAAATGATAGAGTGTATGT
GTACATATTATAAACCAAGAAGAGGAAGGGAAGAAAAAGAGAGTTGACAC
TGCATTGGCGCGAGGAACAGGTCAGAGAGAAATAGAAGTAGAGAAGTACG
ATTAATTGTATAGAGAGCACGGGAAGCTGTTTTACTAGATACGTTTCCTA
CGTTCAGGATGACGTGGTGACATTTGTCCTGGCTTCATAAAAGGAGAAAA
AAAGGATGTAAATGGGTTTGGTTTGATTTCTTTTGAGAGGTGGGAGGTGG
AGTTGGCCGAATGGGCTTTTTGAGGTCAGGGAATTCCAATCAAGAAGTAT
GTCATCGGGAAAATCTTCAGTAGCTGTAGGATGCACGGAAGGAAATTTGG
ATTTCCTGACGTGGGTGTGTGATATTTTGAGCCTCTTGTTGTGTGGGATT
CGAAAGTTGCCCTCGAAGTGGTGGAGGGCTTGCCTTGAACAGATGGTGGA
GACAAGAACTCGAGCGAGCCCCCGCACTTTGATTCTATCTTCACCTTTTA
CTCTTCCCCTTACTCTCCTTCGTTTACCACCCATGCACCAATCACCTACT
CCCCTTCAATAAAATTTGATAAAATAGAGTGTGTTCGCCATCAAACCCCT
CAAAAAGCTTTTTGAGGGGATTGCTTTTTGAGGGGTTTGTCGATGTGTGT
TCGATGCTTTTTGAGGGGTTTGAGATGGGACCCTTCAAAAAGAGCTACCA
ATG

Coding sequence (CDS) from alignment at scaffold_1:1139165..1142317-

>mRNA_1642 ID=mRNA_1642|Name=jgi.p|Nanoce1779_2|626953|organism=Nannochloropsis oceanica|type=CDS|length=648bp|location=Sequence derived from alignment at scaffold_1:1139165..1142317- (Nannochloropsis oceanica)
ATGGTGCTGAAGGCAGGGGCGGATTTGAATGCGGCGGATTGGAAGGGAAG
AACGGTTTTGTTTTGGTTTCAGAATAGTCACGCGAATGAAAAGGCATATG
GGAGGTGTGAGTATAATAGGACGATGTGCAAGCTGGAGAAGGGAGCGAAT
CATGGGCCGGCGATGAAGCAGGAGCTGAAGATTGATTTGTCGATTGGCGT
GGAGGGTGACTTACCTCAGAACAAAATTCCAGTGATTATTTCAGATAGAG
GGGGAAAGGAAAGGTGTGGGGCGGAGGAGCTCAGTGATAAAGAGGGATCG
GCTGCGAAGGAAAGTGGGAAGGACAAGAGGAGGCGGCGGCGAGCCGTCAC
AGTGAAGAGGAAGAAATGGCGGAGGGATTACACTCTCTGGAAGTGGTGGA
CATTGTGCGACTCACCGACGGCCACCGCCGCTCCTCAAGTCCTGCTACGA
CAGTGTCTGCGCCCTCCGCTGGTGCCCCTTCTCTCCCTGGTGACGCTGCT
AGTGCCGCTGCTACCGTGGACGAGGACGCGTATGATAGCCCTCCAAAAGG
GATTCCCTTCTATCCTGTCTTTGCCTACATCAAGGAATGTGATGGTAATG
TTCCCGTCACTGGCTGCAAGGGCTGCCAATGCCGCGGTGCGTGTGTGA

Synonyms

Publications