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Properties
| Property Name | Value |
|---|
| TranscriptId | 573048 |
| Track | FilteredModels2 |
| ProteinId | 572962 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_1 | supercontig | scaffold_1:1139165..1142317 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_1641 ID=mRNA_1641|Name=jgi.p|Nanoce1779_2|572962|organism=Nannochloropsis oceanica|type=mRNA|length=3153bp
TTTTGCGCGAAGGATTTTACGAAGAAAAATGGGCGAAAGCTAACCTCCCT
TTTTCGTTGCCTAACTTAACTGACTTTGAATGCACTAAAACACCACAATA
TCACCTCAATTATCTTAGCAGATGAGTCATGGCAGGGGATCATAATTCCA
GCTAACTGGTGGCACTACCGGCGGTCCACCGCACGGCGCTAAAAAGTCGT
CGGGGGAAAGCCGCGAACGCATGATGCCTGCAACCCTCACAACACTGCCG
CTATTGCAGGCACAAGGAACAGGAGAAAAGCAAGCCCATGCAAATGAAGC
GAAGGCAGCAACCCGTCGTGCCCGGCTTCGCGCAACCAGATTGGCCGAAA
TCAAGGGTTTGCTTAGTAATTTCAGTAAGCGCATGCGCCGTGAACGTGAC
ATGGACGCCTTGCAGGCGGCCGTCCGCAGGCGGGACGTGGAGACGGTTGA
GATGTGGTTCGATAATGATTATGAGGTAACGAAGCATGGGTTGATTGTGG
GGGTGCTAACGGGGGATTTGAGGATGGTCAAATTAATGGTAGATAAGGGG
GGAGGAACGCAGTATGCGCTGGCGAGGCTGCCGAGGGATATGGGTGAGGA
TTTACCGAGGCGGGTTAGTGAGCAGCATAGAGGGTCGGGGTTGATGCATT
CGGCGGTATTGCAGAAGTCGCCGGAAATGATCAATTTGCTGCATTCATAC
ATGAAGGCGGAGTGTAGTAGGCAGTTTGGATAGAGGCATGTATGGCATGC
GGGGGCGATTAAGGACCATAAAGGGTTCACGCCATTGCACTTGGCTATGT
CGTTAAGTAAATTACAGTGTACCGAGAGTTTGATTAAGGCGGAGCATCGA
CTGGAAGATTTGGATCAAGGAGGGCATACACCGTTGGTGTAGTTGCAGAG
AGATGGCTTGGGGTGCTTGGAGATGGTGCTGAAGGCAGGGGCGGATTTGA
ATGCGGCGGATTGGAAGGGAAGAACGGTTTTGTTTTGGTTTCAGAATAGT
CACGCGAATGAAAAGGCATATGGGAGGTGTGAGTATAATAGGACGATGTG
CAAGCTGGAGAAGGGAGCGAATCATGGGCCGGCGATGAAGCAGGAGCTGA
AGATTGATTTGTCGATTGGCGTGGAGGGTGACTTACCTCAGAACAAAATT
CCAGTGATTATTTCAGATAGAGGGGGAAAGGAAAGGTGTGGGGCGGAGGA
GCTCAGTGATAAAGAGGGATCGGCTGCGAAGGAAAGTGGGAAGGACAAGA
GGAGGCGGCGGCGAGCCGTCACAGTGAAGAGGAAGAAATGGCGGAGGGAT
TACACTCTCTGGAAGTGGTGGACATTGTGCGACTCACCGACGGCCACCGC
CGCTCCTCAAGTCCTGCTACGACAGTGTCTGCGCCCTCCGCTGGTGCCCC
TTCTCTCCCTGGTGACGCTGCTAGTGCCGCTGCTACCGTGGACGAGGACG
CGTATGATAGCCCTCCAAAAGGGATTCCCTTCTATCCTGTCTTTGCCTAC
ATCAAGGAATGTGATGGTAATGTTCCCGTCACTGGCTGCAAGGGCTGCCA
ATGCCGCGGTGCGTGTGTGATGAACCCGCATTGTGAATGTCAGATGCGAA
TCCCTTGTAATCTTCCATATTCTACGCCTGAGGGGCTTTTAACAAATATG
ACGGGCGTGAATTTTATGGAATTAGGACCGAACAGTGTAATGAGGGTTGT
GGGCTACGGGTCTTCCAGCTCTCGGTCGCTATTGATTGTGAAGTCCGATG
GACAGGAAAACGGCGGGGTTGGGGTGTTTTCACGATGGAGGCGTTGAAAA
AGGGTCAGTATGCAATGACGTACGTGGGAGAGATGACGAATGATGTGCAA
GCTAATGCCAGGTTTCAGCAGATGACTGATAAAGGTGGGAATCCTTCATA
TCAGACAGAGATGCAGCTTACAAATAATCCGATCGTTGTAATCGACGCGA
CCTATGGAGGCAATGTATCGCGGGTGGTAAATCATTCGTGTGATCCTTAT
TTGTTTCTGAGAAAGGTTTACAACCGCGGAACGCTCTACCCCAATGCCTG
ATTTTTCACCATACGCGGGATTCGAGTTGAATGTCAATTATAATCCGCAT
AAGAAGAAGAAAAAGGGGGGTTCGAGGTCGAGGGATCATTCGCTGGAGGA
AATGCGGTGCTATTGTGGGGCCAGAAAACGCCAGGACGTGATATAGCTTT
AGAGAGTCGACTGTGGTGGCTCTGACTTGGTTGGACGTATTGGTTGATAA
GTATAATAGTAGTGATGCGAGAGAGGAGAAAAGGAAAGAGGTCGGGAAAG
GTGGTATGCGCAGTCATGCGCGGTTTGCAGTCGAGAAAGTTGCAAGTCTC
ACGATGACTGAGGGATCGGCAAGGGAGAGAAGAAAATTATGAGACTGGTA
AGGATGACATTCCTGGGGACTGAAATGAGTGTAAATGATAGAGTGTATGT
GTACATATTATAAACCAAGAAGAGGAAGGGAAGAAAAAGAGAGTTGACAC
TGCATTGGCGCGAGGAACAGGTCAGAGAGAAATAGAAGTAGAGAAGTACG
ATTAATTGTATAGAGAGCACGGGAAGCTGTTTTACTAGATACGTTTCCTA
CGTTCAGGATGACGTGGTGACATTTGTCCTGGCTTCATAAAAGGAGAAAA
AAAGGATGTAAATGGGTTTGGTTTGATTTCTTTTGAGAGGTGGGAGGTGG
AGTTGGCCGAATGGGCTTTTTGAGGTCAGGGAATTCCAATCAAGAAGTAT
GTCATCGGGAAAATCTTCAGTAGCTGTAGGATGCACGGAAGGAAATTTGG
ATTTCCTGACGTGGGTGTGTGATATTTTGAGCCTCTTGTTGTGTGGGATT
CGAAAGTTGCCCTCGAAGTGGTGGAGGGCTTGCCTTGAACAGATGGTGGA
GACAAGAACTCGAGCGAGCCCCCGCACTTTGATTCTATCTTCACCTTTTA
CTCTTCCCCTTACTCTCCTTCGTTTACCACCCATGCACCAATCACCTACT
CCCCTTCAATAAAATTTGATAAAATAGAGTGTGTTCGCCATCAAACCCCT
CAAAAAGCTTTTTGAGGGGATTGCTTTTTGAGGGGTTTGTCGATGTGTGT
TCGATGCTTTTTGAGGGGTTTGAGATGGGACCCTTCAAAAAGAGCTACCA
ATG back to topprotein sequence of jgi.p|Nanoce1779_2|572962 >mRNA_1641-protein ID=mRNA_1641-protein|Name=jgi.p|Nanoce1779_2|572962|organism=Nannochloropsis oceanica|type=polypeptide|length=89bp
MEALKKGQYAMTYVGEMTNDVQANARFQQMTDKGGNPSYQTEMQLTNNPI
VVIDATYGGNVSRVVNHSCDPYLFLRKVYNRGTLYPNA* back to topmRNA from alignment at scaffold_1:1139165..1142317- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_1641 ID=mRNA_1641|Name=jgi.p|Nanoce1779_2|572962|organism=Nannochloropsis oceanica|type=mRNA|length=3153bp|location=Sequence derived from alignment at scaffold_1:1139165..1142317- (Nannochloropsis oceanica)
TTTTGCGCGAAGGATTTTACGAAGAAAAATGGGCGAAAGCTAACCTCCCT
TTTTCGTTGCCTAACTTAACTGACTTTGAATGCACTAAAACACCACAATA
TCACCTCAATTATCTTAGCAGATGAGTCATGGCAGGGGATCATAATTCCA
GCTAACTGGTGGCACTACCGGCGGTCCACCGCACGGCGCTAAAAAGTCGT
CGGGGGAAAGCCGCGAACGCATGATGCCTGCAACCCTCACAACACTGCCG
CTATTGCAGGCACAAGGAACAGGAGAAAAGCAAGCCCATGCAAATGAAGC
GAAGGCAGCAACCCGTCGTGCCCGGCTTCGCGCAACCAGATTGGCCGAAA
TCAAGGGTTTGCTTAGTAATTTCAGTAAGCGCATGCGCCGTGAACGTGAC
ATGGACGCCTTGCAGGCGGCCGTCCGCAGGCGGGACGTGGAGACGGTTGA
GATGTGGTTCGATAATGATTATGAGGTAACGAAGCATGGGTTGATTGTGG
GGGTGCTAACGGGGGATTTGAGGATGGTCAAATTAATGGTAGATAAGGGG
GGAGGAACGCAGTATGCGCTGGCGAGGCTGCCGAGGGATATGGGTGAGGA
TTTACCGAGGCGGGTTAGTGAGCAGCATAGAGGGTCGGGGTTGATGCATT
CGGCGGTATTGCAGAAGTCGCCGGAAATGATCAATTTGCTGCATTCATAC
ATGAAGGCGGAGTGTAGTAGGCAGTTTGGATAGAGGCATGTATGGCATGC
GGGGGCGATTAAGGACCATAAAGGGTTCACGCCATTGCACTTGGCTATGT
CGTTAAGTAAATTACAGTGTACCGAGAGTTTGATTAAGGCGGAGCATCGA
CTGGAAGATTTGGATCAAGGAGGGCATACACCGTTGGTGTAGTTGCAGAG
AGATGGCTTGGGGTGCTTGGAGATGGTGCTGAAGGCAGGGGCGGATTTGA
ATGCGGCGGATTGGAAGGGAAGAACGGTTTTGTTTTGGTTTCAGAATAGT
CACGCGAATGAAAAGGCATATGGGAGGTGTGAGTATAATAGGACGATGTG
CAAGCTGGAGAAGGGAGCGAATCATGGGCCGGCGATGAAGCAGGAGCTGA
AGATTGATTTGTCGATTGGCGTGGAGGGTGACTTACCTCAGAACAAAATT
CCAGTGATTATTTCAGATAGAGGGGGAAAGGAAAGGTGTGGGGCGGAGGA
GCTCAGTGATAAAGAGGGATCGGCTGCGAAGGAAAGTGGGAAGGACAAGA
GGAGGCGGCGGCGAGCCGTCACAGTGAAGAGGAAGAAATGGCGGAGGGAT
TACACTCTCTGGAAGTGGTGGACATTGTGCGACTCACCGACGGCCACCGC
CGCTCCTCAAGTCCTGCTACGACAGTGTCTGCGCCCTCCGCTGGTGCCCC
TTCTCTCCCTGGTGACGCTGCTAGTGCCGCTGCTACCGTGGACGAGGACG
CGTATGATAGCCCTCCAAAAGGGATTCCCTTCTATCCTGTCTTTGCCTAC
ATCAAGGAATGTGATGGTAATGTTCCCGTCACTGGCTGCAAGGGCTGCCA
ATGCCGCGGTGCGTGTGTGATGAACCCGCATTGTGAATGTCAGATGCGAA
TCCCTTGTAATCTTCCATATTCTACGCCTGAGGGGCTTTTAACAAATATG
ACGGGCGTGAATTTTATGGAATTAGGACCGAACAGTGTAATGAGGGTTGT
GGGCTACGGGTCTTCCAGCTCTCGGTCGCTATTGATTGTGAAGTCCGATG
GACAGGAAAACGGCGGGGTTGGGGTGTTTTCACGATGGAGGCGTTGAAAA
AGGGTCAGTATGCAATGACGTACGTGGGAGAGATGACGAATGATGTGCAA
GCTAATGCCAGGTTTCAGCAGATGACTGATAAAGGTGGGAATCCTTCATA
TCAGACAGAGATGCAGCTTACAAATAATCCGATCGTTGTAATCGACGCGA
CCTATGGAGGCAATGTATCGCGGGTGGTAAATCATTCGTGTGATCCTTAT
TTGTTTCTGAGAAAGGTTTACAACCGCGGAACGCTCTACCCCAATGCCTG
ATTTTTCACCATACGCGGGATTCGAGTTGAATGTCAATTATAATCCGCAT
AAGAAGAAGAAAAAGGGGGGTTCGAGGTCGAGGGATCATTCGCTGGAGGA
AATGCGGTGCTATTGTGGGGCCAGAAAACGCCAGGACGTGATATAGCTTT
AGAGAGTCGACTGTGGTGGCTCTGACTTGGTTGGACGTATTGGTTGATAA
GTATAATAGTAGTGATGCGAGAGAGGAGAAAAGGAAAGAGGTCGGGAAAG
GTGGTATGCGCAGTCATGCGCGGTTTGCAGTCGAGAAAGTTGCAAGTCTC
ACGATGACTGAGGGATCGGCAAGGGAGAGAAGAAAATTATGAGACTGGTA
AGGATGACATTCCTGGGGACTGAAATGAGTGTAAATGATAGAGTGTATGT
GTACATATTATAAACCAAGAAGAGGAAGGGAAGAAAAAGAGAGTTGACAC
TGCATTGGCGCGAGGAACAGGTCAGAGAGAAATAGAAGTAGAGAAGTACG
ATTAATTGTATAGAGAGCACGGGAAGCTGTTTTACTAGATACGTTTCCTA
CGTTCAGGATGACGTGGTGACATTTGTCCTGGCTTCATAAAAGGAGAAAA
AAAGGATGTAAATGGGTTTGGTTTGATTTCTTTTGAGAGGTGGGAGGTGG
AGTTGGCCGAATGGGCTTTTTGAGGTCAGGGAATTCCAATCAAGAAGTAT
GTCATCGGGAAAATCTTCAGTAGCTGTAGGATGCACGGAAGGAAATTTGG
ATTTCCTGACGTGGGTGTGTGATATTTTGAGCCTCTTGTTGTGTGGGATT
CGAAAGTTGCCCTCGAAGTGGTGGAGGGCTTGCCTTGAACAGATGGTGGA
GACAAGAACTCGAGCGAGCCCCCGCACTTTGATTCTATCTTCACCTTTTA
CTCTTCCCCTTACTCTCCTTCGTTTACCACCCATGCACCAATCACCTACT
CCCCTTCAATAAAATTTGATAAAATAGAGTGTGTTCGCCATCAAACCCCT
CAAAAAGCTTTTTGAGGGGATTGCTTTTTGAGGGGTTTGTCGATGTGTGT
TCGATGCTTTTTGAGGGGTTTGAGATGGGACCCTTCAAAAAGAGCTACCA
ATG back to topCoding sequence (CDS) from alignment at scaffold_1:1139165..1142317- >mRNA_1641 ID=mRNA_1641|Name=jgi.p|Nanoce1779_2|572962|organism=Nannochloropsis oceanica|type=CDS|length=267bp|location=Sequence derived from alignment at scaffold_1:1139165..1142317- (Nannochloropsis oceanica)
ATGGAGGCGTTGAAAAAGGGTCAGTATGCAATGACGTACGTGGGAGAGAT
GACGAATGATGTGCAAGCTAATGCCAGGTTTCAGCAGATGACTGATAAAG
GTGGGAATCCTTCATATCAGACAGAGATGCAGCTTACAAATAATCCGATC
GTTGTAATCGACGCGACCTATGGAGGCAATGTATCGCGGGTGGTAAATCA
TTCGTGTGATCCTTATTTGTTTCTGAGAAAGGTTTACAACCGCGGAACGC
TCTACCCCAATGCCTGA back to top
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